Wall clock time and date at job start Fri Apr 10 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47359 * 300.00143 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99824 * 3 2 1 7 7 C 1.40026 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00303 * 192.11280 * 7 2 1 9 9 C 1.41542 * 120.00313 * 12.11507 * 7 2 1 10 10 C 1.41159 * 121.00041 * 201.12553 * 9 7 2 11 11 C 1.36591 * 119.12746 * 180.02562 * 10 9 7 12 12 N 1.32071 * 121.25984 * 359.73688 * 11 10 9 13 13 C 1.32486 * 122.22906 * 0.53043 * 12 11 10 14 14 N 1.39459 * 119.65141 * 179.74498 * 13 12 11 15 15 C 1.34781 * 119.99402 * 6.02269 * 14 13 12 16 16 O 1.21575 * 120.00534 * 355.44942 * 15 14 13 17 17 N 1.34781 * 119.99319 * 175.45388 * 15 14 13 18 18 C 1.46501 * 119.99448 * 179.97438 * 17 15 14 19 19 H 1.09006 * 109.47501 * 34.99739 * 18 17 15 20 20 C 1.53000 * 109.47308 * 274.99879 * 18 17 15 21 21 O 1.42910 * 109.46823 * 295.00324 * 20 18 17 22 22 C 1.53000 * 109.47039 * 154.99856 * 18 17 15 23 23 C 1.52996 * 109.47159 * 294.99881 * 22 18 17 24 24 F 1.39906 * 109.47387 * 294.99812 * 23 22 18 25 25 F 1.39903 * 109.47516 * 175.00026 * 23 22 18 26 26 C 1.38645 * 120.70208 * 359.47401 * 13 12 11 27 27 H 0.96997 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.43636 * 0.03255 * 10 9 7 29 29 H 1.08006 * 119.37119 * 180.02562 * 11 10 9 30 30 H 0.96996 * 120.00510 * 186.01226 * 14 13 12 31 31 H 0.96996 * 120.00582 * 359.97438 * 17 15 14 32 32 H 1.08997 * 109.47151 * 54.99548 * 20 18 17 33 33 H 1.08995 * 109.47359 * 175.00452 * 20 18 17 34 34 H 0.96699 * 113.99202 * 179.97438 * 21 20 18 35 35 H 1.09003 * 109.47201 * 174.99616 * 22 18 17 36 36 H 1.08995 * 109.47015 * 55.00017 * 22 18 17 37 37 H 1.09001 * 109.47205 * 55.00150 * 23 22 18 38 38 H 1.08002 * 120.66365 * 180.27194 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0695 -1.2230 0.1968 9 6 1.3236 -2.4250 -0.2562 10 6 1.8596 -3.6637 0.1571 11 6 1.1675 -4.8103 -0.1111 12 7 0.0082 -4.7791 -0.7430 13 6 -0.5400 -3.6467 -1.1582 14 7 -1.7644 -3.6767 -1.8252 15 6 -2.4420 -4.8363 -1.9378 16 8 -1.9489 -5.8706 -1.5315 17 7 -3.6665 -4.8491 -2.5010 18 6 -4.4029 -6.1096 -2.6239 19 1 -4.1909 -6.7401 -1.7603 20 6 -3.9687 -6.8315 -3.9011 21 8 -4.3517 -6.0572 -5.0396 22 6 -5.9037 -5.8194 -2.6873 23 6 -6.3619 -5.2107 -1.3605 24 9 -6.2102 -6.1533 -0.3378 25 9 -7.7076 -4.8403 -1.4573 26 6 0.0880 -2.4315 -0.9318 27 1 -0.4850 0.8400 -0.0004 28 1 2.8045 -3.7043 0.6785 29 1 1.5738 -5.7602 0.2037 30 1 -2.1283 -2.8631 -2.2079 31 1 -4.0601 -4.0239 -2.8249 32 1 -2.8862 -6.9592 -3.8962 33 1 -4.4496 -7.8085 -3.9477 34 1 -4.1071 -6.4553 -5.8862 35 1 -6.4460 -6.7475 -2.8678 36 1 -6.1042 -5.1181 -3.4972 37 1 -5.7583 -4.3312 -1.1365 38 1 -0.3615 -1.5084 -1.2667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:29 Heat of formation + Delta-G solvation = -170.084426 kcal Electronic energy + Delta-G solvation = -26060.941683 eV Core-core repulsion = 21766.188154 eV Total energy + Delta-G solvation = -4294.753529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.95126 -47.96885 -41.48962 -39.99617 -38.34636 -36.24546 -35.85950 -35.47957 -32.80678 -32.30167 -30.24315 -28.94043 -27.91208 -24.65807 -23.93118 -23.67851 -22.09738 -21.58989 -19.82044 -19.44256 -18.47035 -18.39016 -18.21335 -17.84083 -17.25371 -16.98267 -16.60836 -16.15155 -16.01238 -15.87444 -15.38379 -15.00714 -14.89214 -14.72421 -14.55586 -14.35209 -14.31621 -14.11964 -13.96405 -13.41035 -13.13683 -12.84757 -12.80037 -12.68294 -12.37217 -12.04254 -11.87922 -11.85623 -11.52243 -11.29560 -11.18362 -10.92986 -10.14243 -9.90460 -9.61011 -8.81299 -8.57583 -6.56856 0.85938 1.02432 1.42582 1.56316 1.57720 1.59712 2.20988 2.26914 2.75969 2.85205 3.15190 3.28517 3.33628 3.45286 3.64040 3.80331 4.11781 4.17121 4.21453 4.36507 4.49032 4.67139 4.72605 4.76636 4.87732 4.93273 4.98132 5.12667 5.28866 5.46824 5.53090 5.67697 5.84726 6.01419 6.28382 6.59084 6.81458 6.85247 6.86255 6.98744 7.62206 7.92228 8.27558 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.003185 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.757339 B = 8788.345175 C = 9397.804380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.299 4.299 11 C 0.113 3.887 12 N -0.578 5.578 13 C 0.351 3.649 14 N -0.660 5.660 15 C 0.692 3.308 16 O -0.576 6.576 17 N -0.726 5.726 18 C 0.167 3.833 19 H 0.088 0.912 20 C 0.073 3.927 21 O -0.576 6.576 22 C -0.154 4.154 23 C 0.254 3.746 24 F -0.220 7.220 25 F -0.212 7.212 26 C -0.268 4.268 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.419 0.581 31 H 0.410 0.590 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.397 0.603 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -4.423 -9.245 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.323 4.323 11 C -0.040 4.040 12 N -0.298 5.298 13 C 0.123 3.877 14 N -0.309 5.309 15 C 0.391 3.609 16 O -0.450 6.450 17 N -0.384 5.384 18 C 0.061 3.939 19 H 0.106 0.894 20 C -0.007 4.007 21 O -0.384 6.384 22 C -0.193 4.193 23 C 0.201 3.799 24 F -0.202 7.202 25 F -0.194 7.194 26 C -0.294 4.294 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.257 0.743 31 H 0.247 0.753 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.993 -5.687 -8.560 16.566 hybrid contribution 0.746 1.648 -0.181 1.818 sum -12.247 -4.040 -8.741 15.579 Atomic orbital electron populations 1.69763 1.08928 1.30703 1.34380 1.26828 0.95666 1.04582 0.90851 0.85037 0.79271 0.75664 0.79032 1.18252 1.18562 1.19122 1.19939 0.96757 0.91171 1.43031 0.89913 1.18018 0.91334 0.93280 0.87146 1.21825 1.04366 0.93941 1.12174 1.21893 0.90049 0.97695 0.94393 1.67322 1.13988 1.28129 1.20375 1.18196 0.86166 0.90276 0.93017 1.42418 1.19434 1.11197 1.57829 1.16225 0.81628 0.83743 0.79267 1.90983 1.68704 1.31870 1.53452 1.45049 1.16171 1.11849 1.65359 1.20882 0.89851 0.85279 0.97868 0.89368 1.22443 0.98274 0.94339 0.85597 1.86367 1.83545 1.51398 1.17107 1.22762 0.94424 1.06244 0.95826 1.22202 0.79224 0.91223 0.87285 1.92973 1.95561 1.68446 1.63187 1.92972 1.37581 1.92212 1.96606 1.21780 1.01134 0.95895 1.10561 0.89711 0.86797 0.83639 0.74334 0.75345 0.95099 0.90096 0.75355 0.86276 0.85636 0.86534 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.05 10.50 21.84 0.23 -38.82 16 2 C 0.04 1.76 5.31 85.29 0.45 2.21 16 3 Si 0.99 35.46 29.58 68.60 2.03 37.49 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 5 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 6 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.48 -24.65 9.15 23.52 0.22 -24.43 16 8 H 0.08 4.09 7.88 -2.91 -0.02 4.07 16 9 C 0.11 5.91 5.65 -21.11 -0.12 5.79 16 10 C -0.30 -14.94 9.85 22.60 0.22 -14.72 16 11 C 0.11 5.51 11.10 84.27 0.94 6.45 16 12 N -0.58 -30.05 7.86 -194.26 -1.53 -31.57 16 13 C 0.35 17.22 7.42 132.76 0.98 18.20 16 14 N -0.66 -25.53 5.40 -322.37 -1.74 -27.27 16 15 C 0.69 25.55 8.49 179.05 1.52 27.07 16 16 O -0.58 -26.58 14.26 -3.95 -0.06 -26.64 16 17 N -0.73 -17.83 4.40 -457.81 -2.01 -19.84 16 18 C 0.17 3.51 2.33 44.99 0.10 3.61 16 19 H 0.09 2.32 7.25 -2.38 -0.02 2.30 16 20 C 0.07 1.35 6.85 71.98 0.49 1.84 16 21 O -0.58 -8.91 12.83 -148.98 -1.91 -10.82 16 22 C -0.15 -2.29 4.69 30.59 0.14 -2.15 16 23 C 0.25 4.82 5.24 71.98 0.38 5.19 16 24 F -0.22 -5.53 16.93 44.97 0.76 -4.77 16 25 F -0.21 -4.38 17.34 44.97 0.78 -3.60 16 26 C -0.27 -13.76 8.67 23.00 0.20 -13.56 16 27 H 0.29 12.44 8.29 -92.71 -0.77 11.67 16 28 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 29 H 0.15 6.16 8.06 -2.91 -0.02 6.13 16 30 H 0.42 13.04 8.72 -92.71 -0.81 12.23 16 31 H 0.41 7.53 8.62 -92.71 -0.80 6.73 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.40 3.14 9.12 -74.06 -0.68 2.47 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.53 7.73 -2.39 -0.02 1.51 16 37 H 0.12 2.03 7.62 -2.39 -0.02 2.01 16 38 H 0.14 6.93 5.81 -2.91 -0.02 6.91 16 Total: -1.00 -72.01 336.74 0.95 -71.05 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -1.13 Total: 39.29 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.53 Total: 15.50 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.05 Total: -117.50 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.97 Total: -37.46 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 1.54 Total: -8.37 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -72.01 0.95 -71.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.030 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds