Wall clock time and date at job start Fri Apr 10 2020 23:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48499 * 109.46974 * 269.99581 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.46992 * 149.99807 * 3 2 1 7 7 C 1.40029 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00656 * 170.09876 * 7 2 1 9 9 C 1.41548 * 119.99775 * 350.09991 * 7 2 1 10 10 C 1.41158 * 120.99949 * 153.78579 * 9 7 2 11 11 C 1.36594 * 119.13126 * 180.02562 * 10 9 7 12 12 N 1.32072 * 121.25289 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.23395 * 359.65743 * 12 11 10 14 14 N 1.39456 * 119.65042 * 180.32077 * 13 12 11 15 15 C 1.34772 * 120.00347 * 5.65437 * 14 13 12 16 16 O 1.21584 * 119.99613 * 5.02032 * 15 14 13 17 17 N 1.34776 * 120.00545 * 185.02844 * 15 14 13 18 18 C 1.46499 * 120.00249 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46976 * 89.99447 * 18 17 15 20 20 O 1.42903 * 109.47118 * 65.00323 * 19 18 17 21 21 C 1.46497 * 119.99730 * 359.97438 * 17 15 14 22 22 C 1.52994 * 109.47094 * 90.00465 * 21 17 15 23 23 F 1.39903 * 109.47257 * 299.99662 * 22 21 17 24 24 F 1.39900 * 109.47446 * 59.99933 * 22 21 17 25 25 C 1.38650 * 120.70121 * 0.63351 * 13 12 11 26 26 H 0.97003 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.43569 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.37366 * 180.02562 * 11 10 9 29 29 H 0.97001 * 120.00091 * 185.65305 * 14 13 12 30 30 H 1.08999 * 109.47284 * 209.99568 * 18 17 15 31 31 H 1.09003 * 109.47037 * 329.99643 * 18 17 15 32 32 H 1.09000 * 109.47389 * 184.99835 * 19 18 17 33 33 H 1.08998 * 109.47574 * 304.99771 * 19 18 17 34 34 H 0.96697 * 113.99961 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.46948 * 210.00552 * 21 17 15 36 36 H 1.09003 * 109.47239 * 330.00366 * 21 17 15 37 37 H 1.09007 * 109.47378 * 179.97438 * 22 21 17 38 38 H 1.08004 * 120.66181 * 179.68530 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.7001 7 6 2.0077 -1.2126 0.0005 8 1 3.0756 -1.2197 -0.1603 9 6 1.3158 -2.4293 0.2119 10 6 1.8140 -3.6471 -0.2992 11 6 1.1150 -4.7987 -0.0730 12 7 -0.0140 -4.7916 0.6121 13 6 -0.5253 -3.6799 1.1202 14 7 -1.7180 -3.7356 1.8407 15 6 -2.2847 -4.9272 2.1150 16 8 -1.7113 -5.9565 1.8148 17 7 -3.4871 -4.9780 2.7218 18 6 -4.1033 -6.2734 3.0194 19 6 -3.6673 -6.7379 4.4105 20 8 -4.1815 -5.8394 5.3956 21 6 -4.1778 -3.7379 3.0838 22 6 -5.0687 -3.2926 1.9224 23 9 -4.2805 -3.0732 0.7875 24 9 -6.0119 -4.2892 1.6495 25 6 0.1094 -2.4609 0.9376 26 1 -0.4850 0.8401 -0.0004 27 1 2.7357 -3.6682 -0.8616 28 1 1.4928 -5.7327 -0.4619 29 1 -2.1398 -2.9166 2.1445 30 1 -5.1884 -6.1742 2.9930 31 1 -3.7871 -7.0054 2.2762 32 1 -4.0531 -7.7403 4.5963 33 1 -2.5787 -6.7519 4.4643 34 1 -3.9439 -6.0732 6.3033 35 1 -4.7919 -3.9088 3.9680 36 1 -3.4429 -2.9614 3.2964 37 1 -5.5830 -2.3701 2.1919 38 1 -0.3106 -1.5543 1.3477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871731167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:31 Heat of formation + Delta-G solvation = -130.641792 kcal Electronic energy + Delta-G solvation = -27020.091221 eV Core-core repulsion = 22727.048053 eV Total energy + Delta-G solvation = -4293.043168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.85365 -46.86387 -40.06230 -38.25206 -36.97766 -35.18115 -34.34529 -33.72094 -30.70337 -30.45346 -28.97929 -27.66897 -25.95893 -23.41415 -23.23699 -21.88488 -21.11105 -19.36085 -18.41050 -17.79814 -17.61768 -17.23139 -16.99130 -16.39803 -15.98395 -15.47827 -15.13100 -14.60881 -14.46260 -14.15484 -13.96879 -13.77524 -13.59404 -13.30178 -13.21281 -12.85887 -12.64406 -12.60093 -12.46796 -12.37490 -12.08706 -11.44911 -11.41991 -11.23223 -11.15238 -10.87612 -10.27471 -10.17702 -10.09933 -9.72315 -9.54626 -9.35753 -8.57952 -7.93358 -7.69189 -6.98670 -6.70806 -4.59565 2.71279 2.77933 2.83350 3.02521 3.07204 3.26653 3.65847 3.87256 3.89343 4.11226 4.16031 4.27165 4.46149 4.73338 4.79187 5.09887 5.12730 5.24504 5.27889 5.41496 5.67916 5.73478 5.85215 5.96557 6.44866 6.62999 6.67417 6.83914 6.97229 7.16039 7.19057 7.44633 7.46489 7.52462 7.88947 8.09609 8.33430 8.49351 8.76052 8.79231 9.13527 9.75938 10.12905 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.004057 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.757022 B = 6900.197085 C = 7713.960252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.283 4.283 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.355 3.645 14 N -0.661 5.661 15 C 0.698 3.302 16 O -0.529 6.529 17 N -0.626 5.626 18 C 0.137 3.863 19 C 0.058 3.942 20 O -0.574 6.574 21 C 0.066 3.934 22 C 0.237 3.763 23 F -0.193 7.193 24 F -0.205 7.205 25 C -0.242 4.242 26 H 0.280 0.720 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.401 0.599 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.207 -3.179 9.682 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.129 3.871 14 N -0.310 5.310 15 C 0.399 3.601 16 O -0.400 6.400 17 N -0.365 5.365 18 C 0.013 3.987 19 C -0.021 4.021 20 O -0.380 6.380 21 C -0.060 4.060 22 C 0.181 3.819 23 F -0.175 7.175 24 F -0.187 7.187 25 C -0.268 4.268 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.238 0.762 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.702 -4.369 9.013 15.404 hybrid contribution 0.678 1.782 0.312 1.932 sum -11.024 -2.587 9.325 14.669 Atomic orbital electron populations 1.69759 1.07530 1.29086 1.35667 1.25940 0.94856 1.01371 0.92071 0.86228 0.80440 0.80270 0.79286 1.19420 1.20107 1.18463 1.19570 0.95817 0.90028 1.43206 0.90102 1.17568 0.90284 0.92263 0.86371 1.21678 1.04226 0.94521 1.10239 1.21460 0.90615 0.96549 0.94866 1.67159 1.14751 1.28250 1.17035 1.17964 0.85603 0.90896 0.92605 1.42650 1.24247 1.07319 1.56761 1.16017 0.80431 0.84865 0.78769 1.90995 1.61517 1.32049 1.55391 1.47032 1.19439 1.05752 1.64234 1.21398 0.97827 0.85016 0.94444 1.22724 0.98428 0.91932 0.88994 1.86416 1.78437 1.54409 1.18704 1.22661 0.97507 0.89122 0.96734 1.22670 0.84094 0.90502 0.84611 1.93091 1.75144 1.95108 1.54129 1.92954 1.66089 1.64842 1.94781 1.21606 1.01081 0.95323 1.08747 0.90873 0.88054 0.86065 0.76245 0.89735 0.88152 0.92876 0.92837 0.77703 0.86290 0.88231 0.86770 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.70 55.55 0.59 -19.11 16 2 C 0.08 1.83 5.31 -17.34 -0.09 1.74 16 3 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.79 9.14 -37.65 -0.34 -12.14 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.83 5.60 -106.55 -0.60 3.23 16 10 C -0.28 -7.07 9.85 -39.07 -0.38 -7.46 16 11 C 0.12 2.93 11.10 -18.04 -0.20 2.73 16 12 N -0.55 -14.58 7.89 -12.76 -0.10 -14.68 16 13 C 0.36 8.92 7.41 -154.68 -1.15 7.78 16 14 N -0.66 -13.75 4.66 -15.86 -0.07 -13.82 16 15 C 0.70 14.07 7.82 -86.92 -0.68 13.39 16 16 O -0.53 -12.69 14.22 5.29 0.08 -12.61 16 17 N -0.63 -9.37 2.35 -179.43 -0.42 -9.80 16 18 C 0.14 1.76 5.61 -4.04 -0.02 1.73 16 19 C 0.06 0.63 7.39 37.16 0.27 0.91 16 20 O -0.57 -5.55 12.48 -35.23 -0.44 -5.99 16 21 C 0.07 0.73 5.35 -4.05 -0.02 0.71 16 22 C 0.24 2.70 5.60 37.15 0.21 2.91 16 23 F -0.19 -3.14 15.85 2.25 0.04 -3.11 16 24 F -0.21 -2.64 16.25 2.25 0.04 -2.60 16 25 C -0.24 -6.26 8.62 -38.45 -0.33 -6.59 16 26 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 27 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 28 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.40 7.10 6.01 -40.82 -0.25 6.86 16 30 H 0.08 0.95 7.25 -51.93 -0.38 0.57 16 31 H 0.10 1.43 7.42 -51.93 -0.39 1.04 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.38 2.12 9.12 45.56 0.42 2.54 16 35 H 0.12 1.08 7.11 -51.93 -0.37 0.71 16 36 H 0.10 1.02 6.30 -51.93 -0.33 0.70 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.13 3.37 6.11 -52.48 -0.32 3.05 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -34.50 330.11 -6.95 -41.46 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -3.27 Total: 13.33 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -3.34 Total: 8.95 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.00 Total: -57.41 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.36 Total: -18.60 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.07 Total: -5.71 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.50 -6.95 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.184 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds