Wall clock time and date at job start Fri Apr 10 2020 23:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48499 * 109.46974 * 269.99581 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.46992 * 149.99807 * 3 2 1 7 7 C 1.40029 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00656 * 170.09876 * 7 2 1 9 9 C 1.41548 * 119.99775 * 350.09991 * 7 2 1 10 10 C 1.41158 * 120.99949 * 153.78579 * 9 7 2 11 11 C 1.36594 * 119.13126 * 180.02562 * 10 9 7 12 12 N 1.32072 * 121.25289 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.23395 * 359.65743 * 12 11 10 14 14 N 1.39456 * 119.65042 * 180.32077 * 13 12 11 15 15 C 1.34772 * 120.00347 * 5.65437 * 14 13 12 16 16 O 1.21584 * 119.99613 * 5.02032 * 15 14 13 17 17 N 1.34776 * 120.00545 * 185.02844 * 15 14 13 18 18 C 1.46499 * 120.00249 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46976 * 89.99447 * 18 17 15 20 20 O 1.42903 * 109.47118 * 65.00323 * 19 18 17 21 21 C 1.46497 * 119.99730 * 359.97438 * 17 15 14 22 22 C 1.52994 * 109.47094 * 90.00465 * 21 17 15 23 23 F 1.39903 * 109.47257 * 299.99662 * 22 21 17 24 24 F 1.39900 * 109.47446 * 59.99933 * 22 21 17 25 25 C 1.38650 * 120.70121 * 0.63351 * 13 12 11 26 26 H 0.97003 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.43569 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.37366 * 180.02562 * 11 10 9 29 29 H 0.97001 * 120.00091 * 185.65305 * 14 13 12 30 30 H 1.08999 * 109.47284 * 209.99568 * 18 17 15 31 31 H 1.09003 * 109.47037 * 329.99643 * 18 17 15 32 32 H 1.09000 * 109.47389 * 184.99835 * 19 18 17 33 33 H 1.08998 * 109.47574 * 304.99771 * 19 18 17 34 34 H 0.96697 * 113.99961 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.46948 * 210.00552 * 21 17 15 36 36 H 1.09003 * 109.47239 * 330.00366 * 21 17 15 37 37 H 1.09007 * 109.47378 * 179.97438 * 22 21 17 38 38 H 1.08004 * 120.66181 * 179.68530 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.7001 7 6 2.0077 -1.2126 0.0005 8 1 3.0756 -1.2197 -0.1603 9 6 1.3158 -2.4293 0.2119 10 6 1.8140 -3.6471 -0.2992 11 6 1.1150 -4.7987 -0.0730 12 7 -0.0140 -4.7916 0.6121 13 6 -0.5253 -3.6799 1.1202 14 7 -1.7180 -3.7356 1.8407 15 6 -2.2847 -4.9272 2.1150 16 8 -1.7113 -5.9565 1.8148 17 7 -3.4871 -4.9780 2.7218 18 6 -4.1033 -6.2734 3.0194 19 6 -3.6673 -6.7379 4.4105 20 8 -4.1815 -5.8394 5.3956 21 6 -4.1778 -3.7379 3.0838 22 6 -5.0687 -3.2926 1.9224 23 9 -4.2805 -3.0732 0.7875 24 9 -6.0119 -4.2892 1.6495 25 6 0.1094 -2.4609 0.9376 26 1 -0.4850 0.8401 -0.0004 27 1 2.7357 -3.6682 -0.8616 28 1 1.4928 -5.7327 -0.4619 29 1 -2.1398 -2.9166 2.1445 30 1 -5.1884 -6.1742 2.9930 31 1 -3.7871 -7.0054 2.2762 32 1 -4.0531 -7.7403 4.5963 33 1 -2.5787 -6.7519 4.4643 34 1 -3.9439 -6.0732 6.3033 35 1 -4.7919 -3.9088 3.9680 36 1 -3.4429 -2.9614 3.2964 37 1 -5.5830 -2.3701 2.1919 38 1 -0.3106 -1.5543 1.3477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871731167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:31 Heat of formation + Delta-G solvation = -154.829904 kcal Electronic energy + Delta-G solvation = -27021.140097 eV Core-core repulsion = 22727.048053 eV Total energy + Delta-G solvation = -4294.092043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.86921 -47.90972 -41.61230 -39.98886 -38.01249 -36.40511 -36.13433 -35.48485 -32.41698 -31.70174 -30.57753 -28.96307 -27.89192 -24.67859 -24.23884 -23.78816 -22.73082 -20.90819 -19.73355 -19.41223 -18.63900 -18.23713 -18.06549 -17.77501 -17.19556 -17.11793 -16.59858 -16.05192 -16.03130 -15.96826 -15.43614 -14.91124 -14.76108 -14.71378 -14.41001 -14.33791 -14.26922 -14.15301 -13.54938 -13.42087 -13.34915 -13.14154 -12.84122 -12.66511 -12.35672 -12.22658 -12.05338 -11.89042 -11.51079 -11.29723 -11.17273 -10.92206 -9.92340 -9.79131 -9.61754 -8.83750 -8.55597 -6.56320 0.83676 1.02550 1.42685 1.45113 1.54802 1.59356 2.17760 2.22613 2.72412 2.85627 2.96208 3.34190 3.43759 3.54428 3.76989 3.87457 4.06288 4.18150 4.19504 4.34344 4.45015 4.52016 4.69609 4.81160 4.84146 4.85884 4.93838 5.10523 5.25671 5.42969 5.51184 5.65747 5.72346 5.96684 6.23660 6.56324 6.75071 6.82675 6.86582 6.87999 7.52313 7.88293 8.31642 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.004057 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.757022 B = 6900.197085 C = 7713.960252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.296 4.296 11 C 0.113 3.887 12 N -0.580 5.580 13 C 0.352 3.648 14 N -0.655 5.655 15 C 0.694 3.306 16 O -0.574 6.574 17 N -0.618 5.618 18 C 0.130 3.870 19 C 0.070 3.930 20 O -0.579 6.579 21 C 0.062 3.938 22 C 0.228 3.772 23 F -0.225 7.225 24 F -0.214 7.214 25 C -0.259 4.259 26 H 0.291 0.709 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.413 0.587 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.396 0.604 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.168 0.832 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -1.734 10.902 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.320 4.320 11 C -0.041 4.041 12 N -0.300 5.300 13 C 0.125 3.875 14 N -0.305 5.305 15 C 0.395 3.605 16 O -0.449 6.449 17 N -0.355 5.355 18 C 0.007 3.993 19 C -0.009 4.009 20 O -0.387 6.387 21 C -0.062 4.062 22 C 0.174 3.826 23 F -0.207 7.207 24 F -0.195 7.195 25 C -0.285 4.285 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.165 0.835 29 H 0.252 0.748 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.127 0.873 37 H 0.185 0.815 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.891 -2.924 10.284 16.747 hybrid contribution 0.919 1.315 -0.017 1.604 sum -11.972 -1.609 10.267 15.853 Atomic orbital electron populations 1.69799 1.08928 1.30774 1.34760 1.26825 0.95679 1.04526 0.90886 0.85082 0.78991 0.75441 0.79446 1.18924 1.18715 1.18227 1.19876 0.96215 0.90914 1.44428 0.89805 1.18006 0.91058 0.93348 0.86936 1.21866 1.05010 0.94325 1.10788 1.21910 0.90247 0.97611 0.94295 1.67283 1.15645 1.28908 1.18120 1.18189 0.86589 0.90458 0.92312 1.42530 1.23244 1.08434 1.56280 1.16203 0.81620 0.83840 0.78807 1.90951 1.63275 1.33286 1.57386 1.47040 1.17748 1.08062 1.62673 1.21593 0.98713 0.83646 0.95300 1.22471 0.96759 0.93374 0.88279 1.86345 1.78202 1.54343 1.19856 1.23004 0.97857 0.87582 0.97794 1.23255 0.83983 0.92311 0.83069 1.93031 1.76249 1.95329 1.56081 1.92933 1.66250 1.65558 1.94790 1.21584 1.01615 0.95481 1.09777 0.89773 0.86556 0.83519 0.74777 0.87557 0.90212 0.90126 0.95600 0.75422 0.83303 0.87340 0.81514 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.34 10.70 21.84 0.23 -40.11 16 2 C 0.04 1.78 5.31 85.29 0.45 2.23 16 3 Si 0.99 36.05 29.57 68.60 2.03 38.08 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.48 -25.34 9.14 23.52 0.21 -25.13 16 8 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 9 C 0.11 6.28 5.60 -21.11 -0.12 6.16 16 10 C -0.30 -15.13 9.85 22.60 0.22 -14.90 16 11 C 0.11 5.67 11.10 84.27 0.94 6.60 16 12 N -0.58 -31.40 7.89 -194.27 -1.53 -32.94 16 13 C 0.35 18.14 7.41 132.77 0.98 19.13 16 14 N -0.66 -27.69 4.66 -322.37 -1.50 -29.19 16 15 C 0.69 28.41 7.82 179.06 1.40 29.81 16 16 O -0.57 -28.46 14.22 -3.98 -0.06 -28.52 16 17 N -0.62 -18.05 2.35 -839.85 -1.98 -20.02 16 18 C 0.13 3.22 5.61 86.38 0.48 3.71 16 19 C 0.07 1.42 7.39 71.98 0.53 1.95 16 20 O -0.58 -9.59 12.48 -148.98 -1.86 -11.45 16 21 C 0.06 1.24 5.35 86.38 0.46 1.70 16 22 C 0.23 4.68 5.60 71.98 0.40 5.09 16 23 F -0.23 -7.18 15.85 44.97 0.71 -6.47 16 24 F -0.21 -5.06 16.25 44.97 0.73 -4.33 16 25 C -0.26 -13.75 8.62 23.00 0.20 -13.56 16 26 H 0.29 12.81 8.29 -92.71 -0.77 12.04 16 27 H 0.12 5.40 8.06 -2.91 -0.02 5.37 16 28 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 29 H 0.41 14.69 6.01 -92.71 -0.56 14.14 16 30 H 0.11 2.17 7.25 -2.39 -0.02 2.15 16 31 H 0.08 2.31 7.42 -2.39 -0.02 2.30 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.40 3.33 9.12 -74.06 -0.68 2.66 16 35 H 0.15 2.15 7.11 -2.39 -0.02 2.13 16 36 H 0.11 2.00 6.30 -2.39 -0.02 1.99 16 37 H 0.17 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.13 6.74 6.11 -2.91 -0.02 6.72 16 Total: -1.00 -76.94 330.11 2.85 -74.08 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.09 Total: 38.08 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 6.17 Total: 22.79 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -4.78 Total: -122.26 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.92 Total: -39.97 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 1.44 Total: -10.80 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -76.94 2.85 -74.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.749 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds