Wall clock time and date at job start Fri Apr 10 2020 23:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46989 * 2 1 4 4 C 1.50703 * 109.47047 * 240.00202 * 2 1 3 5 5 O 1.21280 * 119.99978 * 244.43469 * 4 2 1 6 6 N 1.34777 * 119.99939 * 64.44033 * 4 2 1 7 7 C 1.46496 * 119.99674 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47188 * 179.97438 * 7 6 4 9 9 H 1.07997 * 119.99638 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00239 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99648 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00005 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47230 * 89.99600 * 12 10 8 14 14 H 1.48499 * 109.47260 * 209.99847 * 12 10 8 15 15 H 1.48503 * 109.47063 * 330.00086 * 12 10 8 16 16 C 1.50698 * 109.47289 * 119.99939 * 2 1 3 17 17 C 1.38238 * 119.99843 * 54.06540 * 16 2 1 18 18 C 1.38230 * 119.99823 * 179.72655 * 17 16 2 19 19 C 1.38238 * 120.00078 * 0.25200 * 18 17 16 20 20 C 1.50705 * 119.99959 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.46765 * 90.00251 * 20 19 18 22 22 F 1.39892 * 109.47022 * 210.00541 * 20 19 18 23 23 F 1.39896 * 109.47069 * 330.00660 * 20 19 18 24 24 C 1.38230 * 120.00079 * 0.02565 * 19 18 17 25 25 C 1.38231 * 119.99830 * 359.95464 * 24 19 18 26 26 H 1.08999 * 109.47111 * 299.99688 * 1 2 3 27 27 H 1.09002 * 109.47308 * 60.00397 * 1 2 3 28 28 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46888 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46772 * 299.99931 * 3 2 1 31 31 H 1.08999 * 109.46939 * 60.00207 * 3 2 1 32 32 H 0.96996 * 120.00344 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.47744 * 299.99767 * 7 6 4 34 34 H 1.09001 * 109.47481 * 60.00107 * 7 6 4 35 35 H 0.97005 * 119.99554 * 179.97438 * 11 10 8 36 36 H 1.07997 * 119.99977 * 0.02562 * 17 16 2 37 37 H 1.08003 * 120.00074 * 180.27819 * 18 17 16 38 38 H 1.07997 * 120.00016 * 179.97438 * 24 19 18 39 39 H 1.08004 * 120.00155 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6618 -1.7413 -1.1211 6 7 1.7821 -0.2000 -2.4526 7 6 2.2709 -0.8903 -3.6487 8 6 1.8598 -0.1197 -4.8767 9 1 1.2916 0.7932 -4.7762 10 6 2.2090 -0.5800 -6.1286 11 7 1.8498 0.0923 -7.2002 12 14 3.1912 -2.1594 -6.3025 13 1 2.2606 -3.3117 -6.4109 14 1 4.0334 -2.0868 -7.5234 15 1 4.0603 -2.3356 -5.1113 16 6 2.0323 -0.7104 1.2304 17 6 1.6003 -1.9928 1.5129 18 6 2.0655 -2.6465 2.6385 19 6 2.9587 -2.0159 3.4845 20 6 3.4653 -2.7285 4.7120 21 9 4.6287 -3.4371 4.3929 22 9 3.7492 -1.7915 5.7112 23 9 2.4885 -3.6184 5.1711 24 6 3.3862 -0.7315 3.2051 25 6 2.9214 -0.0779 2.0793 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.2785 0.6243 -2.5401 33 1 3.3580 -0.9593 -3.6097 34 1 1.8445 -1.8926 -3.6896 35 1 2.0958 -0.2314 -8.0810 36 1 0.9032 -2.4857 0.8516 37 1 1.7315 -3.6501 2.8569 38 1 4.0836 -0.2387 3.8662 39 1 3.2557 0.9256 1.8607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879800527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:33 Heat of formation + Delta-G solvation = -173.539574 kcal Electronic energy + Delta-G solvation = -26078.944666 eV Core-core repulsion = 21764.121349 eV Total energy + Delta-G solvation = -4314.823317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.32097 -47.85035 -47.77118 -40.57301 -38.67789 -35.41673 -34.42950 -32.43069 -31.39203 -30.96737 -27.94480 -27.56314 -26.08106 -23.80032 -22.70664 -22.39649 -21.07670 -19.35051 -18.68536 -18.61811 -18.50884 -17.35050 -16.41630 -15.88273 -15.38019 -15.08827 -14.90579 -14.68066 -14.57229 -14.43332 -14.27970 -14.25073 -14.03287 -13.94744 -13.63401 -13.41372 -13.29780 -12.99315 -12.75025 -12.44303 -12.23882 -12.14999 -12.02605 -11.82040 -11.72307 -11.19262 -11.00110 -10.90048 -10.79058 -10.01642 -9.55331 -9.35744 -9.12958 -9.02219 -8.82945 -8.23052 -6.26442 -4.29086 0.78501 1.17635 2.50722 3.09595 3.22877 3.28496 3.31523 3.38115 3.56394 3.86714 3.93693 4.27979 4.28988 4.33913 4.58578 4.69874 4.84262 4.95475 5.09131 5.15319 5.18379 5.28549 5.48036 5.51412 5.61988 5.65958 5.71143 5.78233 5.96329 5.99995 6.06750 6.15180 6.41007 6.62686 6.74828 7.00640 7.13334 7.32715 8.05947 8.43416 8.68578 8.83043 9.33499 10.85423 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002973 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.771114 B = 9415.129276 C =10050.828085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.146 4.146 4 C 0.510 3.490 5 O -0.548 6.548 6 N -0.700 5.700 7 C 0.221 3.779 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.891 5.891 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C -0.017 4.017 17 C -0.088 4.088 18 C -0.071 4.071 19 C -0.191 4.191 20 C 0.509 3.491 21 F -0.177 7.177 22 F -0.180 7.180 23 F -0.179 7.179 24 C -0.073 4.073 25 C -0.119 4.119 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 0.159 22.995 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C -0.203 4.203 4 C 0.294 3.706 5 O -0.427 6.427 6 N -0.348 5.348 7 C 0.099 3.901 8 C -0.582 4.582 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.528 5.528 12 Si 0.702 3.298 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.018 4.018 17 C -0.106 4.106 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.455 3.545 21 F -0.159 7.159 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.091 4.091 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.475 -0.600 22.847 22.860 hybrid contribution 0.403 -0.588 -0.185 0.736 sum -0.073 -1.188 22.662 22.693 Atomic orbital electron populations 1.21883 0.91310 1.03162 1.03192 1.19858 0.97696 0.96354 0.91597 1.21985 1.01996 0.93063 1.03247 1.20126 0.80589 0.85369 0.84507 1.90683 1.41010 1.24282 1.86714 1.46153 1.55222 1.27628 1.05798 1.19507 0.95051 0.93189 0.82391 1.21070 1.37308 1.10892 0.88969 0.90242 1.24789 0.95146 0.97141 0.95472 1.69877 1.45593 1.39185 0.98193 0.86830 0.80896 0.83678 0.78370 1.19827 1.20851 1.18529 1.19641 0.94472 0.94000 0.93684 1.20958 0.99877 0.94030 0.95746 1.20868 0.94834 0.99774 0.93470 1.19901 1.04974 0.97326 0.97000 1.18348 0.75424 0.76981 0.83718 1.93232 1.50260 1.79636 1.92748 1.93172 1.93751 1.65253 1.63938 1.93177 1.62743 1.69952 1.90180 1.20839 0.98313 0.92705 0.97281 1.21148 0.97447 1.00948 0.94085 0.91327 0.90975 0.91723 0.91513 0.90995 0.91162 0.76962 0.95683 0.96139 0.92212 0.84923 0.84875 0.84888 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.16 37.16 0.30 -1.13 16 2 C -0.05 -0.65 0.72 -156.81 -0.11 -0.76 16 3 C -0.15 -1.48 7.01 37.16 0.26 -1.22 16 4 C 0.51 9.04 6.40 -10.98 -0.07 8.97 16 5 O -0.55 -11.82 15.33 5.56 0.09 -11.73 16 6 N -0.70 -13.31 5.37 -61.48 -0.33 -13.64 16 7 C 0.22 5.24 4.50 -5.20 -0.02 5.22 16 8 C -0.54 -14.49 9.83 -34.44 -0.34 -14.83 16 9 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 12 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 16 C -0.02 -0.22 4.33 -104.62 -0.45 -0.67 16 17 C -0.09 -1.12 8.15 -39.58 -0.32 -1.44 16 18 C -0.07 -0.84 9.40 -39.58 -0.37 -1.21 16 19 C -0.19 -2.19 5.45 -104.62 -0.57 -2.76 16 20 C 0.51 5.64 3.36 36.01 0.12 5.77 16 21 F -0.18 -2.14 17.30 2.25 0.04 -2.10 16 22 F -0.18 -1.92 16.46 2.25 0.04 -1.88 16 23 F -0.18 -1.97 16.46 2.25 0.04 -1.94 16 24 C -0.07 -0.78 9.40 -39.59 -0.37 -1.16 16 25 C -0.12 -1.30 8.99 -39.58 -0.36 -1.66 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.72 7.88 -51.93 -0.41 0.32 16 28 H 0.06 0.69 7.08 -51.93 -0.37 0.32 16 29 H 0.07 0.71 7.24 -51.93 -0.38 0.33 16 30 H 0.07 0.71 7.33 -51.93 -0.38 0.33 16 31 H 0.07 0.54 7.78 -51.93 -0.40 0.14 16 32 H 0.40 6.59 7.21 -40.82 -0.29 6.30 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 1.66 7.23 -52.49 -0.38 1.28 16 37 H 0.13 1.33 7.61 -52.48 -0.40 0.93 16 38 H 0.13 1.14 7.60 -52.49 -0.40 0.74 16 39 H 0.14 1.23 5.91 -52.48 -0.31 0.92 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -31.35 336.20 -5.85 -37.20 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.49 Total: 2.63 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.40 Total: -4.81 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.44 Total: -38.85 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.35 -5.85 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879800527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.343 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds