Wall clock time and date at job start Fri Apr 10 2020 23:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46989 * 2 1 4 4 C 1.50703 * 109.47047 * 240.00202 * 2 1 3 5 5 O 1.21280 * 119.99978 * 244.43469 * 4 2 1 6 6 N 1.34777 * 119.99939 * 64.44033 * 4 2 1 7 7 C 1.46496 * 119.99674 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47188 * 179.97438 * 7 6 4 9 9 H 1.07997 * 119.99638 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00239 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99648 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00005 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47230 * 89.99600 * 12 10 8 14 14 H 1.48499 * 109.47260 * 209.99847 * 12 10 8 15 15 H 1.48503 * 109.47063 * 330.00086 * 12 10 8 16 16 C 1.50698 * 109.47289 * 119.99939 * 2 1 3 17 17 C 1.38238 * 119.99843 * 54.06540 * 16 2 1 18 18 C 1.38230 * 119.99823 * 179.72655 * 17 16 2 19 19 C 1.38238 * 120.00078 * 0.25200 * 18 17 16 20 20 C 1.50705 * 119.99959 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.46765 * 90.00251 * 20 19 18 22 22 F 1.39892 * 109.47022 * 210.00541 * 20 19 18 23 23 F 1.39896 * 109.47069 * 330.00660 * 20 19 18 24 24 C 1.38230 * 120.00079 * 0.02565 * 19 18 17 25 25 C 1.38231 * 119.99830 * 359.95464 * 24 19 18 26 26 H 1.08999 * 109.47111 * 299.99688 * 1 2 3 27 27 H 1.09002 * 109.47308 * 60.00397 * 1 2 3 28 28 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46888 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46772 * 299.99931 * 3 2 1 31 31 H 1.08999 * 109.46939 * 60.00207 * 3 2 1 32 32 H 0.96996 * 120.00344 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.47744 * 299.99767 * 7 6 4 34 34 H 1.09001 * 109.47481 * 60.00107 * 7 6 4 35 35 H 0.97005 * 119.99554 * 179.97438 * 11 10 8 36 36 H 1.07997 * 119.99977 * 0.02562 * 17 16 2 37 37 H 1.08003 * 120.00074 * 180.27819 * 18 17 16 38 38 H 1.07997 * 120.00016 * 179.97438 * 24 19 18 39 39 H 1.08004 * 120.00155 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6618 -1.7413 -1.1211 6 7 1.7821 -0.2000 -2.4526 7 6 2.2709 -0.8903 -3.6487 8 6 1.8598 -0.1197 -4.8767 9 1 1.2916 0.7932 -4.7762 10 6 2.2090 -0.5800 -6.1286 11 7 1.8498 0.0923 -7.2002 12 14 3.1912 -2.1594 -6.3025 13 1 2.2606 -3.3117 -6.4109 14 1 4.0334 -2.0868 -7.5234 15 1 4.0603 -2.3356 -5.1113 16 6 2.0323 -0.7104 1.2304 17 6 1.6003 -1.9928 1.5129 18 6 2.0655 -2.6465 2.6385 19 6 2.9587 -2.0159 3.4845 20 6 3.4653 -2.7285 4.7120 21 9 4.6287 -3.4371 4.3929 22 9 3.7492 -1.7915 5.7112 23 9 2.4885 -3.6184 5.1711 24 6 3.3862 -0.7315 3.2051 25 6 2.9214 -0.0779 2.0793 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.2785 0.6243 -2.5401 33 1 3.3580 -0.9593 -3.6097 34 1 1.8445 -1.8926 -3.6896 35 1 2.0958 -0.2314 -8.0810 36 1 0.9032 -2.4857 0.8516 37 1 1.7315 -3.6501 2.8569 38 1 4.0836 -0.2387 3.8662 39 1 3.2557 0.9256 1.8607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879800527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:33 Heat of formation + Delta-G solvation = -192.257310 kcal Electronic energy + Delta-G solvation = -26079.756328 eV Core-core repulsion = 21764.121349 eV Total energy + Delta-G solvation = -4315.634979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.19801 -48.70922 -48.67011 -41.68097 -39.86837 -36.49498 -36.18710 -34.38934 -32.25471 -31.95302 -29.80328 -28.36971 -26.95840 -25.16016 -23.82210 -23.57181 -22.42184 -20.74419 -19.55781 -19.49656 -19.37827 -18.96465 -17.94889 -17.21186 -16.49872 -16.41909 -16.01837 -15.93117 -15.77753 -15.46488 -15.38214 -15.12507 -14.94552 -14.92093 -14.82724 -14.54778 -14.43778 -14.26570 -14.16883 -13.79008 -13.33068 -13.22591 -13.07349 -12.99657 -12.72013 -12.68321 -12.57928 -12.01890 -11.92747 -11.75916 -11.64519 -10.92468 -10.68961 -10.03669 -10.01045 -9.92425 -8.40567 -6.47070 -0.11818 0.31135 1.31185 1.34347 1.45898 1.63169 1.70493 2.24996 2.27651 2.67406 2.69681 2.95159 3.00756 3.39899 3.40117 3.68914 3.88268 3.89871 4.03471 4.08247 4.33616 4.44200 4.63957 4.73736 4.74984 4.81143 4.85241 4.90852 4.94545 5.02327 5.14791 5.15373 5.25314 5.26360 5.29610 5.50968 5.52712 5.76652 6.07987 6.54150 6.82705 7.15317 7.38843 8.74061 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002973 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.771114 B = 9415.129276 C =10050.828085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 C -0.146 4.146 4 C 0.508 3.492 5 O -0.588 6.588 6 N -0.700 5.700 7 C 0.233 3.767 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.028 3.972 11 N -0.930 5.930 12 Si 0.934 3.066 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.262 1.262 16 C -0.034 4.034 17 C -0.104 4.104 18 C -0.079 4.079 19 C -0.198 4.198 20 C 0.514 3.486 21 F -0.184 7.184 22 F -0.176 7.176 23 F -0.179 7.179 24 C -0.073 4.073 25 C -0.117 4.117 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.408 0.592 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.272 0.728 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 0.707 24.743 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 C -0.203 4.203 4 C 0.295 3.705 5 O -0.469 6.469 6 N -0.349 5.349 7 C 0.109 3.891 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.172 4.172 11 N -0.569 5.569 12 Si 0.758 3.242 13 H -0.191 1.191 14 H -0.199 1.199 15 H -0.187 1.187 16 C -0.035 4.035 17 C -0.122 4.122 18 C -0.097 4.097 19 C -0.199 4.199 20 C 0.460 3.540 21 F -0.166 7.166 22 F -0.157 7.157 23 F -0.161 7.161 24 C -0.091 4.091 25 C -0.135 4.135 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.244 0.756 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.276 -0.029 24.618 24.620 hybrid contribution 0.315 -0.735 -0.665 1.040 sum 0.039 -0.765 23.953 23.965 Atomic orbital electron populations 1.21927 0.89619 1.03201 1.04704 1.19813 0.98928 0.97010 0.88531 1.22059 1.01817 0.91397 1.05054 1.21081 0.79262 0.84832 0.85300 1.90658 1.42693 1.26208 1.87364 1.45982 1.55659 1.28030 1.05224 1.19079 0.94049 0.92686 0.83308 1.21279 1.36417 1.10367 0.90141 0.92017 1.25556 0.96219 1.00096 0.95345 1.69975 1.47149 1.40950 0.98816 0.85911 0.79689 0.80211 0.78393 1.19061 1.19890 1.18662 1.19768 0.95408 0.94201 0.94084 1.21027 1.00409 0.94562 0.96175 1.21009 0.94995 1.00337 0.93333 1.20043 1.04965 0.97846 0.97049 1.18271 0.75140 0.76899 0.83711 1.93220 1.50683 1.79833 1.92827 1.93178 1.93711 1.65051 1.63749 1.93177 1.62719 1.70003 1.90176 1.21153 0.98176 0.92363 0.97426 1.21427 0.96474 1.01944 0.93614 0.88537 0.90704 0.92519 0.91916 0.90786 0.87835 0.75559 0.97165 0.97201 0.91867 0.85630 0.83898 0.82639 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.16 71.98 0.59 -1.98 16 2 C -0.04 -0.92 0.72 -53.67 -0.04 -0.96 16 3 C -0.15 -2.55 7.01 71.98 0.50 -2.04 16 4 C 0.51 17.74 6.40 87.66 0.56 18.30 16 5 O -0.59 -25.43 15.33 -3.03 -0.05 -25.48 16 6 N -0.70 -26.42 5.37 -466.80 -2.51 -28.93 16 7 C 0.23 11.10 4.50 85.63 0.38 11.48 16 8 C -0.54 -29.25 9.83 25.60 0.25 -29.00 16 9 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 10 C 0.03 1.57 5.47 84.66 0.46 2.04 16 11 N -0.93 -54.68 13.96 21.45 0.30 -54.38 16 12 Si 0.93 43.59 27.47 68.60 1.88 45.47 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 16 C -0.03 -0.80 4.33 -19.87 -0.09 -0.89 16 17 C -0.10 -2.56 8.15 22.27 0.18 -2.38 16 18 C -0.08 -1.77 9.40 22.27 0.21 -1.56 16 19 C -0.20 -4.22 5.45 -19.86 -0.11 -4.32 16 20 C 0.51 10.58 3.36 71.24 0.24 10.82 16 21 F -0.18 -4.22 17.30 44.97 0.78 -3.44 16 22 F -0.18 -3.39 16.46 44.97 0.74 -2.65 16 23 F -0.18 -3.72 16.46 44.97 0.74 -2.98 16 24 C -0.07 -1.38 9.40 22.27 0.21 -1.17 16 25 C -0.12 -2.26 8.99 22.27 0.20 -2.06 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.36 7.88 -2.39 -0.02 1.34 16 28 H 0.06 1.15 7.08 -2.39 -0.02 1.13 16 29 H 0.06 1.16 7.24 -2.39 -0.02 1.14 16 30 H 0.07 1.27 7.33 -2.39 -0.02 1.26 16 31 H 0.10 1.15 7.78 -2.39 -0.02 1.13 16 32 H 0.41 13.35 7.21 -92.71 -0.67 12.68 16 33 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 34 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 35 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 36 H 0.13 3.17 7.23 -2.91 -0.02 3.15 16 37 H 0.14 2.78 7.61 -2.91 -0.02 2.76 16 38 H 0.16 2.16 7.60 -2.91 -0.02 2.14 16 39 H 0.16 2.27 5.91 -2.91 -0.02 2.25 16 Total: -1.00 -67.53 336.20 5.83 -61.71 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.38 Total: 14.40 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.56 Total: -3.72 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.21 Total: -83.31 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.26 Total: -9.07 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -67.53 5.83 -61.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879800527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.552 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds