Wall clock time and date at job start Fri Apr 10 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48500 * 109.46990 * 90.00525 * 3 2 1 5 5 H 1.48503 * 109.47303 * 210.00339 * 3 2 1 6 6 H 1.48497 * 109.47372 * 330.00611 * 3 2 1 7 7 C 1.40030 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 15.95513 * 7 2 1 9 9 C 1.41337 * 119.99630 * 195.95740 * 7 2 1 10 10 C 1.40608 * 119.78463 * 188.65439 * 9 7 2 11 11 C 1.38314 * 119.13031 * 179.70233 * 10 9 7 12 12 C 1.38695 * 118.66655 * 0.56475 * 11 10 9 13 13 C 1.39641 * 119.49577 * 359.71933 * 12 11 10 14 14 N 1.39249 * 119.57287 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00231 * 18.78570 * 14 13 12 16 16 O 1.21581 * 119.99979 * 5.79082 * 15 14 13 17 17 N 1.34767 * 120.00441 * 185.78464 * 15 14 13 18 18 C 1.46504 * 120.00291 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47007 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.46820 * 305.00086 * 20 19 18 22 22 O 1.42904 * 109.47323 * 64.99372 * 20 19 18 23 23 C 1.52997 * 109.47293 * 185.00068 * 20 19 18 24 24 F 1.39895 * 109.47432 * 59.99866 * 23 20 19 25 25 F 1.39901 * 109.46907 * 179.97438 * 23 20 19 26 26 N 1.31928 * 120.85228 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99921 * 174.92941 * 1 2 3 28 28 H 1.07998 * 120.43541 * 0.02562 * 10 9 7 29 29 H 1.08000 * 120.66754 * 180.25973 * 11 10 9 30 30 H 1.07999 * 120.25122 * 179.74544 * 12 11 10 31 31 H 0.96999 * 120.00037 * 198.78123 * 14 13 12 32 32 H 0.97007 * 120.00028 * 0.02562 * 17 15 14 33 33 H 1.08991 * 109.47171 * 300.00475 * 18 17 15 34 34 H 1.09000 * 109.46633 * 60.00927 * 18 17 15 35 35 H 1.09005 * 109.47382 * 299.99869 * 19 18 17 36 36 H 1.08995 * 109.47549 * 60.00266 * 19 18 17 37 37 H 0.96704 * 113.99007 * 60.00306 * 22 20 19 38 38 H 1.09003 * 109.46925 * 299.99540 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4401 -0.7001 6 1 1.4390 2.6527 -0.6999 7 6 2.0075 -1.2127 -0.0005 8 1 1.4987 -2.1299 -0.2580 9 6 3.3801 -1.2365 0.3360 10 6 4.1222 -2.4176 0.1594 11 6 5.4659 -2.4239 0.4873 12 6 6.0331 -1.2632 0.9919 13 6 5.2416 -0.1236 1.1499 14 7 5.8092 1.0425 1.6569 15 6 7.1471 1.2042 1.6379 16 8 7.8510 0.3819 1.0845 17 7 7.7046 2.2776 2.2323 18 6 9.1590 2.4531 2.2122 19 6 9.5276 3.7406 2.9518 20 6 11.0464 3.9243 2.9303 21 1 11.5257 3.0352 3.3400 22 8 11.4831 4.1232 1.5842 23 6 11.4249 5.1428 3.7746 24 9 10.9974 4.9480 5.0923 25 9 12.8137 5.3103 3.7553 26 7 3.9630 -0.1375 0.8251 27 1 -0.4850 -0.8367 -0.0742 28 1 3.6505 -3.3067 -0.2321 29 1 6.0604 -3.3162 0.3576 30 1 7.0790 -1.2407 1.2602 31 1 5.2418 1.7384 2.0237 32 1 7.1430 2.9336 2.6742 33 1 9.6343 1.6038 2.7029 34 1 9.5031 2.5155 1.1798 35 1 9.0523 4.5902 2.4614 36 1 9.1835 3.6779 3.9842 37 1 11.0958 4.8987 1.1557 38 1 10.9456 6.0318 3.3648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:35 Heat of formation + Delta-G solvation = -157.940967 kcal Electronic energy + Delta-G solvation = -25345.200087 eV Core-core repulsion = 21050.973138 eV Total energy + Delta-G solvation = -4294.226949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.48004 -47.49093 -40.35998 -38.66917 -38.12032 -35.36001 -34.47868 -33.50922 -32.07674 -31.04891 -29.56525 -28.17474 -25.32897 -24.13900 -22.50750 -22.04780 -21.68592 -20.32992 -18.75819 -18.30510 -18.15989 -17.87967 -17.52845 -16.93001 -16.23539 -16.15189 -15.37789 -15.05390 -14.87762 -14.60758 -14.36363 -14.09957 -14.04718 -13.83637 -13.54995 -13.49305 -13.04805 -12.91563 -12.58870 -12.36028 -12.21887 -11.91031 -11.76654 -11.56103 -11.22115 -10.88788 -10.72095 -10.32757 -9.99181 -9.77859 -9.42884 -9.13921 -9.06443 -8.49807 -7.90153 -7.37321 -7.26317 -4.74319 2.38817 2.57449 2.69820 3.10734 3.38760 3.41676 3.45335 3.57735 3.62394 3.85659 3.89450 4.13874 4.32647 4.34891 4.40450 4.52942 4.61361 4.65913 5.03170 5.12561 5.54123 5.57517 5.65042 5.86155 6.10272 6.26415 6.43446 6.56719 6.67721 6.83993 6.87960 7.18784 7.34434 7.45339 7.64664 7.78331 7.90901 8.20127 8.34844 8.64382 8.73763 9.45851 9.98106 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.002589 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.299633 B =10812.118846 C =11565.910313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.049 3.951 3 Si 1.145 2.855 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.327 1.327 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.276 3.724 10 C -0.280 4.280 11 C -0.036 4.036 12 C -0.310 4.310 13 C 0.399 3.601 14 N -0.667 5.667 15 C 0.709 3.291 16 O -0.562 6.562 17 N -0.749 5.749 18 C 0.146 3.854 19 C -0.167 4.167 20 C 0.068 3.932 21 H 0.127 0.873 22 O -0.535 6.535 23 C 0.233 3.767 24 F -0.199 7.199 25 F -0.197 7.197 26 N -0.597 5.597 27 H 0.284 0.716 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.403 0.597 32 H 0.396 0.604 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.381 0.619 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.850 12.777 7.181 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.173 4.173 3 Si 0.978 3.022 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.152 3.848 10 C -0.302 4.302 11 C -0.060 4.060 12 C -0.335 4.335 13 C 0.168 3.832 14 N -0.314 5.314 15 C 0.409 3.591 16 O -0.437 6.437 17 N -0.406 5.406 18 C 0.022 3.978 19 C -0.205 4.205 20 C 0.007 3.993 21 H 0.144 0.856 22 O -0.341 6.341 23 C 0.179 3.821 24 F -0.180 7.180 25 F -0.179 7.179 26 N -0.322 5.322 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.238 0.762 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.230 0.770 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.105 13.734 7.009 23.781 hybrid contribution -0.374 -1.379 0.334 1.467 sum 17.731 12.355 7.343 22.825 Atomic orbital electron populations 1.70614 1.08257 1.33015 1.30834 1.27650 0.95232 1.05957 0.88472 0.82114 0.72752 0.70067 0.77253 1.21634 1.20741 1.26008 1.20645 0.93144 0.96987 1.40669 0.89838 1.18172 0.92918 0.85998 0.87758 1.21602 0.94673 0.99828 1.14125 1.20922 0.94313 0.96326 0.94480 1.21541 1.01961 0.92770 1.17204 1.17771 0.89527 0.83814 0.92120 1.42310 1.05509 1.20451 1.63100 1.15683 0.81725 0.82090 0.79629 1.90869 1.61263 1.43259 1.48329 1.45068 1.07900 1.26286 1.61313 1.21004 0.79214 0.96069 1.01545 1.22481 0.94896 0.99685 1.03477 1.22879 0.95203 0.97601 0.83617 0.85550 1.86769 1.71510 1.51627 1.24159 1.22750 0.77356 1.01458 0.80546 1.93008 1.89513 1.96577 1.38911 1.93026 1.31711 1.96700 1.96420 1.66124 1.10163 1.30344 1.25597 0.90467 0.87742 0.87681 0.84227 0.76244 0.77015 0.91164 0.90459 0.89907 0.88927 0.77042 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.74 13.65 55.55 0.76 -20.98 16 2 C 0.05 1.31 5.51 -17.34 -0.10 1.21 16 3 Si 1.14 27.34 25.93 -169.99 -4.41 22.93 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 6.55 56.52 0.37 -6.53 16 6 H -0.33 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.48 -13.14 9.51 -37.73 -0.36 -13.50 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.28 7.29 6.27 -85.00 -0.53 6.76 16 10 C -0.28 -6.76 9.83 -38.66 -0.38 -7.14 16 11 C -0.04 -0.81 10.15 -39.38 -0.40 -1.21 16 12 C -0.31 -7.11 8.83 -38.89 -0.34 -7.45 16 13 C 0.40 9.21 7.51 -154.99 -1.16 8.04 16 14 N -0.67 -12.19 5.42 -15.79 -0.09 -12.28 16 15 C 0.71 11.77 8.40 -86.93 -0.73 11.03 16 16 O -0.56 -11.35 13.14 5.29 0.07 -11.28 16 17 N -0.75 -8.07 5.56 -65.23 -0.36 -8.44 16 18 C 0.15 1.29 5.57 -4.04 -0.02 1.27 16 19 C -0.17 -0.79 4.95 -26.73 -0.13 -0.92 16 20 C 0.07 0.35 3.13 -26.73 -0.08 0.27 16 21 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 22 O -0.54 -3.19 12.82 -35.23 -0.45 -3.64 16 23 C 0.23 1.17 4.99 37.16 0.19 1.36 16 24 F -0.20 -1.40 16.73 2.25 0.04 -1.36 16 25 F -0.20 -1.58 17.28 2.25 0.04 -1.55 16 26 N -0.60 -15.13 5.07 -10.26 -0.05 -15.18 16 27 H 0.28 7.35 8.73 -40.82 -0.36 7.00 16 28 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.14 3.16 5.33 -52.51 -0.28 2.88 16 31 H 0.40 6.29 8.84 -40.82 -0.36 5.93 16 32 H 0.40 3.04 8.49 -40.82 -0.35 2.69 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.38 0.68 9.05 45.56 0.41 1.10 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -34.43 333.67 -7.01 -41.43 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.52 Total: 5.58 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -4.06 Total: -0.27 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.26 Total: -56.87 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.38 Total: -14.92 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 27.34 SS G_CDS: -4.41 Total: 22.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.43 -7.01 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.507 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds