Wall clock time and date at job start Fri Apr 10 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48500 * 109.46990 * 90.00525 * 3 2 1 5 5 H 1.48503 * 109.47303 * 210.00339 * 3 2 1 6 6 H 1.48497 * 109.47372 * 330.00611 * 3 2 1 7 7 C 1.40030 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 15.95513 * 7 2 1 9 9 C 1.41337 * 119.99630 * 195.95740 * 7 2 1 10 10 C 1.40608 * 119.78463 * 188.65439 * 9 7 2 11 11 C 1.38314 * 119.13031 * 179.70233 * 10 9 7 12 12 C 1.38695 * 118.66655 * 0.56475 * 11 10 9 13 13 C 1.39641 * 119.49577 * 359.71933 * 12 11 10 14 14 N 1.39249 * 119.57287 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00231 * 18.78570 * 14 13 12 16 16 O 1.21581 * 119.99979 * 5.79082 * 15 14 13 17 17 N 1.34767 * 120.00441 * 185.78464 * 15 14 13 18 18 C 1.46504 * 120.00291 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47007 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.46820 * 305.00086 * 20 19 18 22 22 O 1.42904 * 109.47323 * 64.99372 * 20 19 18 23 23 C 1.52997 * 109.47293 * 185.00068 * 20 19 18 24 24 F 1.39895 * 109.47432 * 59.99866 * 23 20 19 25 25 F 1.39901 * 109.46907 * 179.97438 * 23 20 19 26 26 N 1.31928 * 120.85228 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99921 * 174.92941 * 1 2 3 28 28 H 1.07998 * 120.43541 * 0.02562 * 10 9 7 29 29 H 1.08000 * 120.66754 * 180.25973 * 11 10 9 30 30 H 1.07999 * 120.25122 * 179.74544 * 12 11 10 31 31 H 0.96999 * 120.00037 * 198.78123 * 14 13 12 32 32 H 0.97007 * 120.00028 * 0.02562 * 17 15 14 33 33 H 1.08991 * 109.47171 * 300.00475 * 18 17 15 34 34 H 1.09000 * 109.46633 * 60.00927 * 18 17 15 35 35 H 1.09005 * 109.47382 * 299.99869 * 19 18 17 36 36 H 1.08995 * 109.47549 * 60.00266 * 19 18 17 37 37 H 0.96704 * 113.99007 * 60.00306 * 22 20 19 38 38 H 1.09003 * 109.46925 * 299.99540 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4401 -0.7001 6 1 1.4390 2.6527 -0.6999 7 6 2.0075 -1.2127 -0.0005 8 1 1.4987 -2.1299 -0.2580 9 6 3.3801 -1.2365 0.3360 10 6 4.1222 -2.4176 0.1594 11 6 5.4659 -2.4239 0.4873 12 6 6.0331 -1.2632 0.9919 13 6 5.2416 -0.1236 1.1499 14 7 5.8092 1.0425 1.6569 15 6 7.1471 1.2042 1.6379 16 8 7.8510 0.3819 1.0845 17 7 7.7046 2.2776 2.2323 18 6 9.1590 2.4531 2.2122 19 6 9.5276 3.7406 2.9518 20 6 11.0464 3.9243 2.9303 21 1 11.5257 3.0352 3.3400 22 8 11.4831 4.1232 1.5842 23 6 11.4249 5.1428 3.7746 24 9 10.9974 4.9480 5.0923 25 9 12.8137 5.3103 3.7553 26 7 3.9630 -0.1375 0.8251 27 1 -0.4850 -0.8367 -0.0742 28 1 3.6505 -3.3067 -0.2321 29 1 6.0604 -3.3162 0.3576 30 1 7.0790 -1.2407 1.2602 31 1 5.2418 1.7384 2.0237 32 1 7.1430 2.9336 2.6742 33 1 9.6343 1.6038 2.7029 34 1 9.5031 2.5155 1.1798 35 1 9.0523 4.5902 2.4614 36 1 9.1835 3.6779 3.9842 37 1 11.0958 4.8987 1.1557 38 1 10.9456 6.0318 3.3648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:35 Heat of formation + Delta-G solvation = -184.315156 kcal Electronic energy + Delta-G solvation = -25346.343757 eV Core-core repulsion = 21050.973138 eV Total energy + Delta-G solvation = -4295.370620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93869 -47.97312 -41.79064 -40.09643 -38.88656 -36.48932 -35.97522 -35.34402 -32.92570 -32.79708 -31.15562 -28.92618 -27.22087 -24.98910 -23.67499 -23.38015 -22.82002 -21.80720 -20.49016 -19.47974 -18.82671 -18.68332 -18.20687 -18.01668 -17.21615 -16.90464 -16.79584 -16.46050 -16.16594 -15.79428 -15.66251 -15.30014 -14.90592 -14.85204 -14.66368 -14.35068 -14.28278 -14.20903 -13.93982 -13.70578 -13.39738 -12.97537 -12.89677 -12.76902 -12.35148 -12.14069 -11.94931 -11.83587 -11.58184 -11.17401 -11.04086 -10.93886 -10.37322 -10.19661 -9.81701 -9.30183 -9.13472 -6.77364 0.61143 0.80232 1.37499 1.53527 1.67910 1.99595 2.03818 2.42606 2.62641 2.67235 2.99487 3.17900 3.30511 3.53910 3.60599 3.81349 3.97495 4.08019 4.11106 4.21970 4.42788 4.54374 4.62979 4.68491 4.72661 4.82215 5.00997 5.02945 5.35568 5.38803 5.40495 5.46942 5.71127 5.80438 5.94936 6.07461 6.43940 6.64578 6.67768 6.87667 7.40209 7.56776 7.94845 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.002589 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.299633 B =10812.118846 C =11565.910313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.020 3.980 3 Si 1.177 2.823 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.321 1.321 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.297 4.297 11 C -0.030 4.030 12 C -0.309 4.309 13 C 0.392 3.608 14 N -0.662 5.662 15 C 0.706 3.294 16 O -0.599 6.599 17 N -0.721 5.721 18 C 0.143 3.857 19 C -0.152 4.152 20 C 0.073 3.927 21 H 0.111 0.889 22 O -0.555 6.555 23 C 0.230 3.770 24 F -0.211 7.211 25 F -0.217 7.217 26 N -0.608 5.608 27 H 0.281 0.719 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.416 0.584 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 14.749 8.064 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.198 4.198 3 Si 1.007 2.993 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.254 1.254 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.319 4.319 11 C -0.054 4.054 12 C -0.334 4.334 13 C 0.159 3.841 14 N -0.311 5.311 15 C 0.406 3.594 16 O -0.478 6.478 17 N -0.378 5.378 18 C 0.020 3.980 19 C -0.190 4.190 20 C 0.012 3.988 21 H 0.129 0.871 22 O -0.364 6.364 23 C 0.177 3.823 24 F -0.192 7.192 25 F -0.198 7.198 26 N -0.333 5.333 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.253 0.747 32 H 0.253 0.747 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.250 0.750 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 19.805 15.775 7.940 26.536 hybrid contribution -0.669 -2.030 0.079 2.139 sum 19.136 13.746 8.019 24.888 Atomic orbital electron populations 1.70640 1.08518 1.32882 1.32813 1.28491 0.95489 1.07822 0.87950 0.81700 0.71340 0.68172 0.78068 1.19602 1.22062 1.25369 1.20641 0.94088 0.96769 1.43047 0.91415 1.18363 0.92985 0.87311 0.87944 1.21760 0.95572 0.99633 1.14961 1.21313 0.93789 0.97521 0.92809 1.21866 1.02318 0.92988 1.16212 1.18074 0.88941 0.85541 0.91496 1.42229 1.06427 1.19544 1.62892 1.15877 0.80841 0.82993 0.79658 1.90831 1.61772 1.45089 1.50096 1.44911 1.08945 1.24645 1.59336 1.21138 0.77487 0.97963 1.01450 1.22375 0.94662 0.98293 1.03666 1.22741 0.95203 0.97374 0.83482 0.87119 1.86741 1.72158 1.52963 1.24500 1.23123 0.76437 1.02928 0.79831 1.92983 1.89515 1.96745 1.39994 1.92986 1.33588 1.96813 1.96460 1.66126 1.11251 1.30119 1.25815 0.90789 0.86867 0.84136 0.83532 0.74669 0.74697 0.92452 0.91627 0.86940 0.87987 0.74957 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.33 13.65 21.84 0.30 -45.03 16 2 C 0.02 1.08 5.51 85.29 0.47 1.55 16 3 Si 1.18 54.84 25.93 68.60 1.78 56.62 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -14.11 6.55 99.48 0.65 -13.46 16 6 H -0.32 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.51 -28.61 9.51 23.47 0.22 -28.39 16 8 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 9 C 0.26 13.74 6.27 40.20 0.25 13.99 16 10 C -0.30 -14.21 9.83 22.87 0.22 -13.98 16 11 C -0.03 -1.29 10.15 22.40 0.23 -1.06 16 12 C -0.31 -13.65 8.83 22.72 0.20 -13.45 16 13 C 0.39 17.49 7.51 133.24 1.00 18.49 16 14 N -0.66 -22.76 5.42 -322.15 -1.75 -24.50 16 15 C 0.71 21.86 8.40 179.06 1.50 23.37 16 16 O -0.60 -23.28 13.14 -3.97 -0.05 -23.33 16 17 N -0.72 -13.37 5.56 -478.56 -2.66 -16.03 16 18 C 0.14 2.19 5.57 86.38 0.48 2.67 16 19 C -0.15 -0.90 4.95 30.59 0.15 -0.75 16 20 C 0.07 0.58 3.13 30.59 0.10 0.68 16 21 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 22 O -0.56 -5.37 12.82 -148.98 -1.91 -7.28 16 23 C 0.23 1.68 4.99 71.98 0.36 2.04 16 24 F -0.21 -2.47 16.73 44.97 0.75 -1.72 16 25 F -0.22 -3.14 17.28 44.97 0.78 -2.36 16 26 N -0.61 -30.27 5.07 -186.37 -0.95 -31.22 16 27 H 0.28 15.02 8.73 -92.71 -0.81 14.21 16 28 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 29 H 0.14 4.94 8.06 -2.91 -0.02 4.91 16 30 H 0.15 6.36 5.33 -3.20 -0.02 6.35 16 31 H 0.42 11.84 8.84 -92.71 -0.82 11.02 16 32 H 0.42 4.70 8.49 -92.70 -0.79 3.91 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.21 7.82 -2.39 -0.02 1.19 16 35 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.10 0.50 7.66 -2.39 -0.02 0.49 16 37 H 0.40 0.22 9.05 -74.05 -0.67 -0.45 16 38 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: -1.00 -75.44 333.67 0.26 -75.18 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -1.22 Total: 14.53 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.19 Total: 5.16 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.05 Total: -116.78 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.96 Total: -30.61 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 1.53 Total: -4.08 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 1.78 Total: 56.62 kcal Total: -75.44 0.26 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.135 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds