Wall clock time and date at job start Fri Apr 10 2020 23:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47407 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47326 * 120.00025 * 3 2 1 6 6 H 1.48503 * 109.47264 * 239.99770 * 3 2 1 7 7 C 1.40022 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00260 * 1.94994 * 7 2 1 9 9 C 1.41339 * 119.99781 * 181.94691 * 7 2 1 10 10 C 1.40612 * 119.78670 * 186.97566 * 9 7 2 11 11 C 1.38315 * 119.12802 * 179.70520 * 10 9 7 12 12 C 1.38687 * 118.66859 * 0.56810 * 11 10 9 13 13 C 1.39642 * 119.49830 * 359.71520 * 12 11 10 14 14 N 1.39248 * 119.57825 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99633 * 18.82254 * 14 13 12 16 16 O 1.21577 * 120.00399 * 5.80339 * 15 14 13 17 17 N 1.34772 * 119.99929 * 185.80152 * 15 14 13 18 18 C 1.46508 * 120.00349 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47517 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47393 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.46407 * 55.00117 * 20 19 18 22 22 O 1.42901 * 109.47177 * 295.00562 * 20 19 18 23 23 C 1.52997 * 109.47164 * 175.00058 * 20 19 18 24 24 F 1.39899 * 109.46784 * 185.00202 * 23 20 19 25 25 F 1.39899 * 109.47161 * 304.99909 * 23 20 19 26 26 N 1.31934 * 120.84855 * 359.97438 * 13 12 11 27 27 H 0.97005 * 120.00165 * 174.83290 * 1 2 3 28 28 H 1.07997 * 120.43352 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.66383 * 180.26242 * 11 10 9 30 30 H 1.08000 * 120.24872 * 179.74799 * 12 11 10 31 31 H 0.96998 * 120.00128 * 198.82585 * 14 13 12 32 32 H 0.96996 * 120.00398 * 359.97438 * 17 15 14 33 33 H 1.09003 * 109.46656 * 300.00095 * 18 17 15 34 34 H 1.09001 * 109.46939 * 59.99663 * 18 17 15 35 35 H 1.08998 * 109.47440 * 300.00552 * 19 18 17 36 36 H 1.09001 * 109.47165 * 59.99956 * 19 18 17 37 37 H 0.96699 * 113.99992 * 299.99604 * 22 20 19 38 38 H 1.08997 * 109.47254 * 65.00578 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4680 -2.1477 -0.0309 9 6 3.4203 -1.2130 0.0421 10 6 4.1232 -2.4219 -0.1055 11 6 5.5057 -2.4056 -0.0687 12 6 6.1519 -1.1939 0.1251 13 6 5.3975 -0.0279 0.2713 14 7 6.0446 1.1896 0.4655 15 6 7.3463 1.3201 0.1413 16 8 7.9279 0.4103 -0.4174 17 7 8.0033 2.4593 0.4363 18 6 9.4184 2.6010 0.0844 19 6 9.9184 3.9779 0.5260 20 6 11.3964 4.1256 0.1591 21 1 11.5267 3.9371 -0.9066 22 8 12.1693 3.1848 0.9072 23 6 11.8638 5.5451 0.4868 24 9 13.1810 5.7154 0.0472 25 9 11.0342 6.4695 -0.1568 26 7 4.0794 -0.0650 0.2269 27 1 -0.4850 -0.8367 -0.0757 28 1 3.5906 -3.3501 -0.2508 29 1 6.0705 -3.3189 -0.1837 30 1 7.2305 -1.1523 0.1621 31 1 5.5587 1.9438 0.8341 32 1 7.5393 3.1854 0.8816 33 1 9.9970 1.8256 0.5866 34 1 9.5363 2.5009 -0.9946 35 1 9.3397 4.7529 0.0236 36 1 9.8005 4.0784 1.6049 37 1 12.1010 3.2935 1.8656 38 1 11.8171 5.7033 1.5642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:37 Heat of formation + Delta-G solvation = -157.354194 kcal Electronic energy + Delta-G solvation = -25368.906373 eV Core-core repulsion = 21074.704868 eV Total energy + Delta-G solvation = -4294.201505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.48470 -47.49592 -40.38363 -38.69295 -38.15210 -35.37530 -34.50299 -33.51375 -32.07361 -31.10715 -29.58522 -28.19006 -25.34846 -24.16406 -22.50378 -22.07585 -21.72818 -20.34166 -18.76889 -18.32549 -18.16583 -17.88679 -17.52790 -16.96363 -16.26676 -16.11959 -15.45449 -15.04253 -14.85444 -14.69310 -14.37949 -14.10753 -14.00240 -13.83906 -13.65190 -13.38843 -13.05920 -12.90172 -12.70714 -12.37061 -12.21851 -11.90278 -11.77112 -11.57218 -11.22685 -10.81571 -10.73879 -10.38087 -10.02496 -9.69221 -9.46533 -9.17492 -9.12391 -8.54783 -7.81056 -7.36697 -7.24790 -4.77552 2.36677 2.55951 2.65241 3.10078 3.38573 3.41476 3.51858 3.56993 3.64765 3.85827 3.95399 4.13269 4.33716 4.37221 4.40568 4.52657 4.65282 4.66503 5.03254 5.12981 5.52781 5.56117 5.64516 5.83311 6.07914 6.25289 6.40557 6.53704 6.65156 6.82750 6.85847 7.15763 7.31464 7.44638 7.61688 7.74992 7.88995 8.17931 8.32338 8.62785 8.71664 9.40495 9.99934 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.002644 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.390481 B =10587.648324 C =11654.657965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.042 3.958 3 Si 1.159 2.841 4 H -0.334 1.334 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.279 4.279 11 C -0.034 4.034 12 C -0.310 4.310 13 C 0.404 3.596 14 N -0.667 5.667 15 C 0.709 3.291 16 O -0.561 6.561 17 N -0.748 5.748 18 C 0.146 3.854 19 C -0.167 4.167 20 C 0.068 3.932 21 H 0.127 0.873 22 O -0.536 6.536 23 C 0.234 3.766 24 F -0.198 7.198 25 F -0.198 7.198 26 N -0.601 5.601 27 H 0.283 0.717 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.404 0.596 32 H 0.396 0.604 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.381 0.619 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.972 12.087 4.496 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.179 4.179 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.151 3.849 10 C -0.301 4.301 11 C -0.058 4.058 12 C -0.335 4.335 13 C 0.173 3.827 14 N -0.315 5.315 15 C 0.409 3.591 16 O -0.437 6.437 17 N -0.405 5.405 18 C 0.022 3.978 19 C -0.206 4.206 20 C 0.007 3.993 21 H 0.145 0.855 22 O -0.341 6.341 23 C 0.179 3.821 24 F -0.179 7.179 25 F -0.180 7.180 26 N -0.327 5.327 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.239 0.761 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.946 13.323 3.525 24.244 hybrid contribution -0.157 -1.532 0.668 1.678 sum 19.789 11.791 4.193 23.414 Atomic orbital electron populations 1.70643 1.08149 1.32790 1.31374 1.27774 0.95351 1.06185 0.88555 0.81752 0.70470 0.69574 0.78632 1.26744 1.21399 1.22255 1.20713 0.90076 0.96282 1.43823 0.89851 1.18262 0.93435 0.85882 0.87354 1.21595 0.93892 0.98462 1.16175 1.20933 0.94063 0.96420 0.94407 1.21539 1.01122 0.91092 1.19765 1.17779 0.88470 0.83262 0.93211 1.42336 1.09459 1.13903 1.65756 1.15685 0.81078 0.82904 0.79446 1.90869 1.67407 1.39150 1.46271 1.45067 1.11880 1.17475 1.66111 1.21011 0.79987 0.95694 1.01148 1.22478 0.95400 0.99360 1.03326 1.22883 0.90567 0.86021 0.99831 0.85508 1.86767 1.69967 1.54727 1.22651 1.22748 0.73507 0.89198 0.96608 1.93026 1.37067 1.96106 1.91692 1.93010 1.71910 1.68513 1.84542 1.65862 1.06665 1.29668 1.30512 0.90590 0.87672 0.87589 0.84131 0.76148 0.76994 0.90442 0.91175 0.88840 0.89927 0.77066 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.98 13.65 55.55 0.76 -21.22 16 2 C 0.04 1.15 5.52 -17.35 -0.10 1.05 16 3 Si 1.16 27.92 25.53 -169.99 -4.34 23.58 16 4 H -0.33 -7.93 7.11 56.52 0.40 -7.53 16 5 H -0.29 -6.55 6.70 56.52 0.38 -6.17 16 6 H -0.29 -7.24 7.10 56.52 0.40 -6.83 16 7 C -0.48 -13.03 9.58 -37.73 -0.36 -13.39 16 8 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 9 C 0.27 7.26 6.39 -85.00 -0.54 6.71 16 10 C -0.28 -6.70 9.83 -38.66 -0.38 -7.08 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.31 -7.06 8.83 -38.89 -0.34 -7.40 16 13 C 0.40 9.30 7.51 -154.98 -1.16 8.13 16 14 N -0.67 -12.24 5.42 -15.79 -0.09 -12.32 16 15 C 0.71 11.75 8.40 -86.92 -0.73 11.02 16 16 O -0.56 -11.29 13.14 5.30 0.07 -11.22 16 17 N -0.75 -8.07 5.56 -65.22 -0.36 -8.44 16 18 C 0.15 1.29 5.57 -4.04 -0.02 1.27 16 19 C -0.17 -0.80 4.91 -26.73 -0.13 -0.93 16 20 C 0.07 0.35 3.15 -26.73 -0.08 0.27 16 21 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 22 O -0.54 -3.07 12.87 -35.23 -0.45 -3.52 16 23 C 0.23 1.17 5.02 37.16 0.19 1.35 16 24 F -0.20 -1.58 17.33 2.25 0.04 -1.54 16 25 F -0.20 -1.40 16.53 2.25 0.04 -1.36 16 26 N -0.60 -15.24 4.58 -10.26 -0.05 -15.29 16 27 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16 28 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.14 3.15 5.33 -52.50 -0.28 2.87 16 31 H 0.40 6.36 8.84 -40.82 -0.36 6.00 16 32 H 0.40 3.05 8.49 -40.82 -0.35 2.70 16 33 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.44 7.53 -51.93 -0.39 0.05 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.38 0.56 9.05 45.56 0.41 0.97 16 38 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -34.55 332.92 -6.94 -41.49 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.51 Total: 4.97 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.07 Total: -0.14 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.26 Total: -57.27 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.38 Total: -14.74 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 27.92 SS G_CDS: -4.34 Total: 23.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.55 -6.94 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.863 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds