Wall clock time and date at job start Fri Apr 10 2020 23:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47407 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47326 * 120.00025 * 3 2 1 6 6 H 1.48503 * 109.47264 * 239.99770 * 3 2 1 7 7 C 1.40022 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00260 * 1.94994 * 7 2 1 9 9 C 1.41339 * 119.99781 * 181.94691 * 7 2 1 10 10 C 1.40612 * 119.78670 * 186.97566 * 9 7 2 11 11 C 1.38315 * 119.12802 * 179.70520 * 10 9 7 12 12 C 1.38687 * 118.66859 * 0.56810 * 11 10 9 13 13 C 1.39642 * 119.49830 * 359.71520 * 12 11 10 14 14 N 1.39248 * 119.57825 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99633 * 18.82254 * 14 13 12 16 16 O 1.21577 * 120.00399 * 5.80339 * 15 14 13 17 17 N 1.34772 * 119.99929 * 185.80152 * 15 14 13 18 18 C 1.46508 * 120.00349 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47517 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47393 * 179.97438 * 19 18 17 21 21 O 1.42891 * 109.47183 * 180.02562 * 20 19 18 22 22 C 1.42901 * 114.00060 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.47060 * 300.00255 * 22 21 20 24 24 F 1.39904 * 109.47285 * 60.00070 * 22 21 20 25 25 N 1.31934 * 120.84855 * 359.97438 * 13 12 11 26 26 H 0.97005 * 120.00165 * 174.83290 * 1 2 3 27 27 H 1.07997 * 120.43352 * 0.02562 * 10 9 7 28 28 H 1.07997 * 120.66383 * 180.26242 * 11 10 9 29 29 H 1.08000 * 120.24872 * 179.74799 * 12 11 10 30 30 H 0.96998 * 120.00128 * 198.82585 * 14 13 12 31 31 H 0.96996 * 120.00398 * 359.97438 * 17 15 14 32 32 H 1.09003 * 109.46656 * 300.00095 * 18 17 15 33 33 H 1.09001 * 109.46939 * 59.99663 * 18 17 15 34 34 H 1.08998 * 109.47440 * 300.00552 * 19 18 17 35 35 H 1.09001 * 109.47165 * 59.99956 * 19 18 17 36 36 H 1.09003 * 109.46830 * 300.00280 * 20 19 18 37 37 H 1.09001 * 109.46888 * 59.99924 * 20 19 18 38 38 H 1.08997 * 109.47809 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4680 -2.1477 -0.0309 9 6 3.4203 -1.2130 0.0421 10 6 4.1232 -2.4219 -0.1055 11 6 5.5057 -2.4056 -0.0687 12 6 6.1519 -1.1939 0.1251 13 6 5.3975 -0.0279 0.2713 14 7 6.0446 1.1896 0.4655 15 6 7.3463 1.3201 0.1413 16 8 7.9279 0.4103 -0.4174 17 7 8.0033 2.4593 0.4363 18 6 9.4184 2.6010 0.0844 19 6 9.9184 3.9779 0.5260 20 6 11.3964 4.1256 0.1591 21 8 11.8635 5.4113 0.5720 22 6 13.2400 5.6529 0.2740 23 9 14.0318 4.6984 0.9215 24 9 13.4404 5.5652 -1.1078 25 7 4.0794 -0.0650 0.2269 26 1 -0.4850 -0.8367 -0.0757 27 1 3.5906 -3.3501 -0.2508 28 1 6.0705 -3.3189 -0.1837 29 1 7.2305 -1.1523 0.1621 30 1 5.5587 1.9438 0.8341 31 1 7.5393 3.1854 0.8816 32 1 9.9970 1.8256 0.5866 33 1 9.5363 2.5009 -0.9946 34 1 9.3397 4.7529 0.0236 35 1 9.8005 4.0784 1.6049 36 1 11.9748 3.3505 0.6619 37 1 11.5147 4.0249 -0.9198 38 1 13.5172 6.6489 0.6191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:39 Heat of formation + Delta-G solvation = -186.396178 kcal Electronic energy + Delta-G solvation = -24989.673118 eV Core-core repulsion = 20694.212258 eV Total energy + Delta-G solvation = -4295.460860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01807 -48.14832 -41.82159 -40.12319 -38.98593 -36.81293 -36.10033 -35.37110 -33.08698 -32.97594 -31.09207 -27.71701 -27.15860 -25.54350 -23.92712 -23.54133 -22.79872 -21.80784 -20.49239 -19.47744 -19.37617 -18.74226 -18.64547 -18.48028 -17.28939 -16.96909 -16.74124 -16.42546 -16.24099 -15.78382 -15.51664 -15.22565 -15.02795 -14.89700 -14.66055 -14.52371 -14.36405 -14.31399 -14.18944 -13.70279 -13.27123 -12.98626 -12.76206 -12.70002 -12.53005 -12.42373 -12.23368 -11.76606 -11.61800 -11.38427 -11.16174 -10.98607 -10.40933 -10.21722 -9.73738 -9.26056 -9.15164 -6.80838 0.59604 0.75639 1.31135 1.57537 1.70628 1.99305 2.04710 2.09470 2.45688 2.70176 2.76957 3.07662 3.57510 3.72420 3.77213 3.90553 3.96552 4.05009 4.08307 4.38427 4.40511 4.41124 4.59729 4.66136 4.70954 4.80053 4.97991 5.03870 5.33291 5.37431 5.38003 5.44853 5.51172 5.68402 5.78314 5.91929 6.05249 6.41907 6.62155 6.84236 7.36913 7.52020 7.96045 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.002314 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.681233 B =12095.614403 C =12939.111186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.012 3.988 3 Si 1.191 2.809 4 H -0.330 1.330 5 H -0.270 1.270 6 H -0.302 1.302 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.295 4.295 11 C -0.027 4.027 12 C -0.307 4.307 13 C 0.395 3.605 14 N -0.664 5.664 15 C 0.708 3.292 16 O -0.597 6.597 17 N -0.722 5.722 18 C 0.141 3.859 19 C -0.114 4.114 20 C 0.048 3.952 21 O -0.393 6.393 22 C 0.401 3.599 23 F -0.222 7.222 24 F -0.222 7.222 25 N -0.613 5.613 26 H 0.280 0.720 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.416 0.584 31 H 0.416 0.584 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.616 14.537 3.062 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.204 4.204 3 Si 1.024 2.976 4 H -0.264 1.264 5 H -0.197 1.197 6 H -0.231 1.231 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.317 4.317 11 C -0.051 4.051 12 C -0.331 4.331 13 C 0.163 3.837 14 N -0.312 5.312 15 C 0.408 3.592 16 O -0.476 6.476 17 N -0.379 5.379 18 C 0.017 3.983 19 C -0.152 4.152 20 C -0.028 4.028 21 O -0.315 6.315 22 C 0.310 3.690 23 F -0.204 7.204 24 F -0.204 7.204 25 N -0.339 5.339 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.253 0.747 31 H 0.253 0.747 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 24.351 16.118 2.814 29.337 hybrid contribution -0.262 -2.677 -0.168 2.695 sum 24.088 13.441 2.646 27.712 Atomic orbital electron populations 1.70667 1.08434 1.32658 1.33577 1.28598 0.95641 1.08064 0.88102 0.81355 0.69828 0.67629 0.78747 1.26359 1.19725 1.23123 1.20702 0.90962 0.95929 1.46459 0.91375 1.18443 0.93408 0.87271 0.87509 1.21758 0.94926 0.98164 1.16837 1.21337 0.93454 0.97818 0.92472 1.21875 1.01665 0.91330 1.18253 1.18095 0.87976 0.85199 0.92429 1.42267 1.10152 1.12977 1.65845 1.15820 0.80412 0.83819 0.79105 1.90823 1.67869 1.40888 1.47984 1.44871 1.12295 1.16195 1.64509 1.21106 0.78878 0.97465 1.00809 1.21513 0.93648 0.95964 1.04073 1.22554 0.95912 0.83953 1.00401 1.88366 1.24994 1.36861 1.81264 1.23903 0.77743 0.93979 0.73356 1.93049 1.75621 1.70080 1.81621 1.93051 1.94793 1.97354 1.35206 1.65862 1.07817 1.29467 1.30769 0.90897 0.86734 0.83869 0.83266 0.74656 0.74695 0.91298 0.91653 0.89001 0.88838 0.91212 0.91352 0.77109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.34 13.65 21.84 0.30 -46.04 16 2 C 0.01 0.67 5.52 85.29 0.47 1.14 16 3 Si 1.19 56.63 25.53 68.60 1.75 58.38 16 4 H -0.33 -15.30 7.11 99.48 0.71 -14.59 16 5 H -0.27 -11.96 6.70 99.48 0.67 -11.30 16 6 H -0.30 -14.64 7.10 99.48 0.71 -13.93 16 7 C -0.51 -28.51 9.58 23.47 0.22 -28.29 16 8 H 0.07 3.89 8.05 -2.91 -0.02 3.86 16 9 C 0.26 13.72 6.39 40.21 0.26 13.98 16 10 C -0.29 -13.96 9.83 22.87 0.22 -13.73 16 11 C -0.03 -1.12 10.15 22.40 0.23 -0.89 16 12 C -0.31 -13.33 8.83 22.72 0.20 -13.13 16 13 C 0.40 17.60 7.51 133.24 1.00 18.60 16 14 N -0.66 -23.12 5.42 -322.14 -1.75 -24.86 16 15 C 0.71 22.09 8.40 179.06 1.50 23.59 16 16 O -0.60 -22.84 13.14 -3.96 -0.05 -22.89 16 17 N -0.72 -14.20 5.56 -478.54 -2.66 -16.86 16 18 C 0.14 2.26 5.67 86.38 0.49 2.75 16 19 C -0.11 -1.17 5.70 30.59 0.17 -1.00 16 20 C 0.05 0.56 5.66 71.98 0.41 0.96 16 21 O -0.39 -4.61 10.64 -148.98 -1.58 -6.19 16 22 C 0.40 3.46 6.30 113.37 0.71 4.18 16 23 F -0.22 -2.88 16.88 44.97 0.76 -2.12 16 24 F -0.22 -2.92 16.88 44.97 0.76 -2.16 16 25 N -0.61 -30.63 4.58 -186.37 -0.85 -31.48 16 26 H 0.28 15.18 8.72 -92.70 -0.81 14.37 16 27 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 28 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.15 6.33 5.33 -3.15 -0.02 6.32 16 30 H 0.42 12.23 8.84 -92.71 -0.82 11.41 16 31 H 0.42 5.47 8.49 -92.71 -0.79 4.68 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.81 7.73 -2.39 -0.02 0.79 16 37 H 0.07 0.81 7.73 -2.39 -0.02 0.79 16 38 H 0.21 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -71.98 334.46 2.01 -69.97 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.56 Total: 16.09 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.90 Total: 8.17 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.96 Total: -119.25 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.64 Total: -29.08 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 1.52 Total: -4.28 kcal Atomic # 14 Polarization: 56.63 SS G_CDS: 1.75 Total: 58.38 kcal Total: -71.98 2.01 -69.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.422 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds