Wall clock time and date at job start Fri Apr 10 2020 23:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31372 * 1 3 3 Si 1.86804 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47166 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47414 * 120.00022 * 3 2 1 6 6 H 1.48503 * 109.46763 * 240.00155 * 3 2 1 7 7 C 1.39034 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00513 * 200.04953 * 7 2 1 9 9 N 1.36884 * 119.99560 * 20.04703 * 7 2 1 10 10 C 1.34773 * 120.00118 * 43.56825 * 9 7 2 11 11 O 1.21614 * 120.00199 * 355.35958 * 10 9 7 12 12 C 1.47555 * 120.00147 * 175.35459 * 10 9 7 13 13 C 1.39778 * 120.07267 * 329.46658 * 12 10 9 14 14 C 1.37714 * 119.95954 * 179.74408 * 13 12 10 15 15 C 1.39033 * 120.11108 * 0.55776 * 14 13 12 16 16 N 1.39894 * 119.92525 * 179.72157 * 15 14 13 17 17 C 1.35819 * 126.10256 * 359.97438 * 16 15 14 18 18 C 1.35295 * 107.61986 * 179.97438 * 17 16 15 19 19 C 1.39935 * 107.96921 * 359.97438 * 18 17 16 20 20 N 1.30845 * 108.36378 * 359.76516 * 19 18 17 21 21 C 1.39248 * 120.15049 * 359.69353 * 15 14 13 22 22 F 1.35100 * 119.98484 * 180.02562 * 21 15 14 23 23 C 1.37933 * 120.03682 * 0.02779 * 21 15 14 24 24 C 1.46495 * 120.00141 * 223.56470 * 9 7 2 25 25 C 1.53000 * 117.49732 * 5.65287 * 24 9 7 26 26 C 1.53002 * 60.00117 * 252.50722 * 25 24 9 27 27 H 0.97004 * 119.99547 * 354.95284 * 1 2 3 28 28 H 1.08003 * 120.02285 * 0.02562 * 13 12 10 29 29 H 1.07994 * 119.94389 * 180.29974 * 14 13 12 30 30 H 1.08006 * 126.18784 * 359.92541 * 17 16 15 31 31 H 1.08005 * 126.01551 * 180.02562 * 18 17 16 32 32 H 1.08005 * 125.82199 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.05270 * 180.02562 * 23 21 15 34 34 H 1.09000 * 115.55201 * 151.35896 * 24 9 7 35 35 H 1.09004 * 117.50243 * 359.97438 * 25 24 9 36 36 H 1.09003 * 117.50140 * 145.02048 * 25 24 9 37 37 H 1.09000 * 117.49564 * 252.50887 * 26 25 24 38 38 H 1.08998 * 117.51270 * 107.47864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 1.2827 2.7465 -0.0006 5 1 3.1015 1.6965 1.2124 6 1 3.1014 1.6964 -1.2126 7 6 2.0089 -1.2041 0.0005 8 1 3.0398 -1.2323 0.3212 9 7 1.3866 -2.3537 -0.4053 10 6 0.6089 -2.3466 -1.5060 11 8 0.3917 -1.3023 -2.0903 12 6 0.0211 -3.6057 -2.0023 13 6 0.6925 -4.8163 -1.8085 14 6 0.1392 -5.9907 -2.2680 15 6 -1.0808 -5.9731 -2.9346 16 7 -1.6364 -7.1677 -3.4049 17 6 -1.0940 -8.4066 -3.2795 18 6 -1.9402 -9.2853 -3.8645 19 6 -3.0327 -8.5665 -4.3623 20 7 -2.8549 -7.3005 -4.0833 21 6 -1.7511 -4.7691 -3.1348 22 9 -2.9366 -4.7559 -3.7826 23 6 -1.2053 -3.5898 -2.6721 24 6 1.5661 -3.5920 0.3567 25 6 2.3509 -3.5075 1.6673 26 6 2.9797 -4.1714 0.4406 27 1 -0.4850 0.8369 0.0739 28 1 1.6424 -4.8312 -1.2948 29 1 0.6558 -6.9265 -2.1139 30 1 -0.1562 -8.6466 -2.8004 31 1 -1.7979 -10.3537 -3.9342 32 1 -3.8805 -8.9857 -4.8838 33 1 -1.7251 -2.6559 -2.8269 34 1 0.7354 -4.2963 0.3116 35 1 2.7342 -2.5306 1.9624 36 1 2.0366 -4.1562 2.4849 37 1 3.0789 -5.2568 0.4512 38 1 3.7761 -3.6314 -0.0715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318331663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:03 Heat of formation + Delta-G solvation = 92.609647 kcal Electronic energy + Delta-G solvation = -25758.433985 eV Core-core repulsion = 21905.840951 eV Total energy + Delta-G solvation = -3852.593034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.55781 -41.46498 -39.60329 -37.79055 -36.22904 -33.57304 -32.84448 -31.22499 -30.71594 -30.12091 -28.98571 -25.47508 -23.80326 -23.10680 -21.89801 -21.71028 -20.79517 -20.58093 -19.77959 -18.30244 -17.61429 -16.33750 -16.05643 -15.77735 -15.61792 -15.17986 -14.76433 -14.72384 -14.54263 -14.01254 -13.79788 -13.76339 -13.63252 -13.09557 -12.93666 -12.79973 -12.26497 -12.10717 -11.80394 -11.36796 -11.16717 -11.03010 -10.95012 -10.86689 -10.76346 -10.34923 -10.17685 -10.05595 -9.83632 -9.21992 -8.88638 -8.76104 -8.26255 -7.88853 -7.20496 -6.25051 -3.99986 0.65775 1.29308 2.04641 2.27728 2.66822 3.23581 3.31963 3.34550 3.49329 4.02053 4.17012 4.21717 4.44329 4.59614 4.66160 4.73361 4.90385 5.03699 5.09428 5.30817 5.33271 5.41702 5.47182 5.54286 5.59526 5.68871 5.77506 5.82069 6.00360 6.05823 6.13307 6.18896 6.37211 6.48275 6.58774 6.60103 6.73312 6.81427 7.12311 7.47423 7.52526 8.10621 8.85959 8.97029 9.46345 10.08250 10.82211 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003787 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.406181 B = 7392.079092 C = 8383.137060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.352 4.352 8 H 0.084 0.916 9 N -0.407 5.407 10 C 0.503 3.497 11 O -0.521 6.521 12 C -0.069 4.069 13 C -0.096 4.096 14 C -0.122 4.122 15 C 0.114 3.886 16 N -0.317 5.317 17 C 0.051 3.949 18 C -0.264 4.264 19 C 0.045 3.955 20 N -0.275 5.275 21 C 0.095 3.905 22 F -0.120 7.120 23 C -0.091 4.091 24 C 0.065 3.935 25 C -0.171 4.171 26 C -0.211 4.211 27 H 0.268 0.732 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.179 0.821 31 H 0.153 0.847 32 H 0.188 0.812 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -16.760 -2.108 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.478 4.478 8 H 0.102 0.898 9 N -0.126 5.126 10 C 0.291 3.709 11 O -0.399 6.399 12 C -0.074 4.074 13 C -0.115 4.115 14 C -0.142 4.142 15 C 0.020 3.980 16 N -0.093 5.093 17 C -0.091 4.091 18 C -0.293 4.293 19 C -0.143 4.143 20 N -0.094 5.094 21 C 0.073 3.927 22 F -0.098 7.098 23 C -0.111 4.111 24 C -0.041 4.041 25 C -0.209 4.209 26 C -0.250 4.250 27 H 0.078 0.922 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.196 0.804 31 H 0.171 0.829 32 H 0.204 0.796 33 H 0.169 0.831 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.391 -14.819 -2.566 15.044 hybrid contribution 0.391 -0.255 0.076 0.473 sum 0.000 -15.074 -2.490 15.278 Atomic orbital electron populations 1.69821 1.06765 1.28028 1.40317 1.25290 0.94818 0.99611 0.94165 0.86215 0.79342 0.81563 0.78612 1.21037 1.20231 1.19761 1.18903 0.95505 0.83928 1.49452 0.89793 1.42651 1.43558 1.06504 1.19868 1.17535 0.84279 0.86745 0.82295 1.90665 1.60037 1.31610 1.57624 1.20544 0.93863 0.95504 0.97482 1.21815 1.01220 0.90285 0.98168 1.20581 0.93349 0.99915 1.00377 1.17641 0.95279 0.82448 1.02625 1.45900 1.16011 1.04509 1.42906 1.22765 1.00557 0.83980 1.01825 1.21555 0.97129 1.00780 1.09794 1.24108 0.99672 0.90701 0.99796 1.77731 0.97947 1.19490 1.14216 1.17112 0.84000 0.92298 0.99259 1.91559 1.42681 1.97063 1.78513 1.21234 0.95736 0.97038 0.97102 1.22026 0.93227 0.91469 0.97415 1.23146 1.03983 1.02744 0.91027 1.23424 0.98539 0.99135 1.03935 0.92163 0.82557 0.84470 0.80436 0.82945 0.79563 0.83080 0.87156 0.87308 0.89566 0.89411 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.43 11.65 55.50 0.65 -22.78 16 2 C 0.07 1.99 4.32 -17.45 -0.08 1.92 16 3 Si 0.92 21.08 29.60 -169.99 -5.03 16.05 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.35 -9.07 7.89 -15.00 -0.12 -9.19 16 8 H 0.08 2.06 7.34 -52.49 -0.39 1.67 16 9 N -0.41 -9.63 2.84 -108.90 -0.31 -9.94 16 10 C 0.50 12.44 6.82 -12.46 -0.08 12.36 16 11 O -0.52 -15.07 14.21 5.26 0.07 -15.00 16 12 C -0.07 -1.37 5.43 -104.96 -0.57 -1.94 16 13 C -0.10 -1.49 7.57 -39.20 -0.30 -1.78 16 14 C -0.12 -1.61 9.44 -39.48 -0.37 -1.99 16 15 C 0.11 1.79 6.70 -83.51 -0.56 1.23 16 16 N -0.32 -4.68 3.81 -10.49 -0.04 -4.72 16 17 C 0.05 0.56 10.82 -16.84 -0.18 0.37 16 18 C -0.26 -2.61 10.80 -40.00 -0.43 -3.04 16 19 C 0.04 0.51 12.02 -17.34 -0.21 0.30 16 20 N -0.28 -4.28 10.77 30.64 0.33 -3.95 16 21 C 0.09 1.70 7.28 -39.32 -0.29 1.41 16 22 F -0.12 -2.25 15.51 2.25 0.03 -2.22 16 23 C -0.09 -1.75 9.57 -39.13 -0.37 -2.13 16 24 C 0.06 1.18 4.25 -67.93 -0.29 0.89 16 25 C -0.17 -2.81 9.80 -26.73 -0.26 -3.07 16 26 C -0.21 -3.13 9.04 -26.73 -0.24 -3.38 16 27 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 28 H 0.16 2.24 4.53 -52.48 -0.24 2.00 16 29 H 0.14 1.27 6.72 -52.49 -0.35 0.92 16 30 H 0.18 1.26 7.04 -52.48 -0.37 0.89 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.19 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.15 3.06 7.92 -52.49 -0.42 2.65 16 34 H 0.11 1.87 6.10 -51.93 -0.32 1.55 16 35 H 0.11 2.00 6.78 -51.93 -0.35 1.65 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -33.57 326.75 -7.40 -40.97 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.68 Total: 4.69 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.35 Total: -8.04 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.63 Total: -41.38 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.07 Total: -15.00 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.03 Total: -2.22 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.57 -7.40 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318331663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.578 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds