Wall clock time and date at job start Fri Apr 10 2020 23:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 H 1.09006 * 109.46867 * 306.02395 * 3 2 1 5 5 C 1.53003 * 109.47217 * 66.02063 * 3 2 1 6 6 C 1.52999 * 109.47346 * 186.07222 * 5 3 2 7 7 F 1.39906 * 109.47233 * 61.94185 * 6 5 3 8 8 F 1.39894 * 109.47524 * 181.94474 * 6 5 3 9 9 F 1.39904 * 109.46789 * 301.94857 * 6 5 3 10 10 C 1.50699 * 109.47513 * 186.02262 * 3 2 1 11 11 O 1.21284 * 119.99755 * 275.78207 * 10 3 2 12 12 N 1.34774 * 119.99838 * 95.77822 * 10 3 2 13 13 C 1.39120 * 119.99747 * 184.98967 * 12 10 3 14 14 C 1.38644 * 120.28840 * 330.51116 * 13 12 10 15 15 C 1.38219 * 120.03960 * 179.97438 * 14 13 12 16 16 C 1.38871 * 120.61311 * 359.97438 * 15 14 13 17 17 C 1.36463 * 120.57813 * 359.97438 * 16 15 14 18 18 C 1.40741 * 119.94120 * 359.74888 * 17 16 15 19 19 C 1.41068 * 120.30030 * 180.27455 * 18 17 16 20 20 H 1.07999 * 120.00192 * 146.83950 * 19 18 17 21 21 C 1.39961 * 120.00100 * 326.84708 * 19 18 17 22 22 N 1.30851 * 119.99543 * 343.37608 * 21 19 18 23 23 Si 1.86791 * 120.00140 * 163.38121 * 21 19 18 24 24 H 1.48505 * 109.47194 * 59.99577 * 23 21 19 25 25 H 1.48497 * 109.47359 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47289 * 299.99627 * 23 21 19 27 27 H 1.08995 * 109.47480 * 182.10810 * 1 2 3 28 28 H 1.09000 * 109.46944 * 302.11065 * 1 2 3 29 29 H 1.08995 * 109.46708 * 62.10741 * 1 2 3 30 30 H 1.08995 * 109.47135 * 239.99351 * 2 1 3 31 31 H 1.09005 * 109.46966 * 119.99536 * 2 1 3 32 32 H 1.09000 * 109.47150 * 306.06895 * 5 3 2 33 33 H 1.08998 * 109.47374 * 66.06679 * 5 3 2 34 34 H 0.97001 * 120.00086 * 5.27043 * 12 10 3 35 35 H 1.08007 * 119.97999 * 359.97438 * 14 13 12 36 36 H 1.07998 * 119.69526 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.70665 * 179.97438 * 16 15 14 38 38 H 1.07995 * 120.03224 * 180.02562 * 17 16 15 39 39 H 0.96998 * 119.99808 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 1.6575 2.1187 1.3180 6 6 2.0325 3.6009 1.2585 7 9 1.3137 4.2230 0.2320 8 9 1.7234 4.2096 2.4795 9 9 3.4036 3.7252 1.0093 10 6 3.5397 1.4450 -0.1491 11 8 4.2463 1.3038 0.8265 12 7 4.0956 1.6043 -1.3665 13 6 5.4746 1.5032 -1.5201 14 6 6.3213 1.8447 -0.4767 15 6 7.6906 1.7418 -0.6347 16 6 8.2327 1.2970 -1.8334 17 6 7.4226 0.9532 -2.8764 18 6 6.0248 1.0433 -2.7396 19 6 5.1802 0.6843 -3.8109 20 1 4.2159 0.2400 -3.6129 21 6 5.5918 0.9039 -5.1305 22 7 6.5849 1.7189 -5.3789 23 14 4.7234 0.0337 -6.5368 24 1 3.2872 0.4115 -6.5413 25 1 5.3441 0.4337 -7.8251 26 1 4.8480 -1.4357 -6.3620 27 1 -0.3634 -1.0269 0.0378 28 1 -0.3633 0.5463 0.8705 29 1 -0.3632 0.4807 -0.9083 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.5836 2.0219 1.4777 33 1 2.1914 1.6415 2.1397 34 1 3.5346 1.7934 -2.1348 35 1 5.9107 2.1915 0.4602 36 1 8.3450 2.0097 0.1816 37 1 9.3047 1.2226 -1.9410 38 1 7.8536 0.6080 -3.8045 39 1 6.8699 1.8713 -6.2935 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410827232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:34 Heat of formation + Delta-G solvation = -187.336710 kcal Electronic energy + Delta-G solvation = -27217.670712 eV Core-core repulsion = 22902.249106 eV Total energy + Delta-G solvation = -4315.421606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.99616 -47.54531 -47.39505 -39.87652 -37.50590 -35.58227 -33.77700 -33.62004 -31.01051 -29.65889 -28.76135 -26.69201 -25.13995 -23.25846 -22.37844 -21.24127 -20.33491 -19.39648 -18.43408 -18.25294 -17.56159 -17.34307 -16.77852 -16.17660 -15.19977 -14.78949 -14.54487 -14.34003 -14.31590 -14.17154 -13.98739 -13.91393 -13.58445 -13.51481 -13.37554 -13.05237 -12.88064 -12.60293 -12.41687 -11.97148 -11.95015 -11.74847 -11.60459 -11.36749 -11.20925 -11.05768 -10.93059 -10.84735 -10.53281 -10.15192 -9.74342 -9.28967 -9.18907 -8.71843 -7.36698 -6.98623 -6.69945 -4.41050 2.59107 2.83161 2.85932 3.03266 3.04869 3.19454 3.36502 3.72692 3.84806 3.88922 3.99760 4.17847 4.61095 4.71090 4.87331 4.88124 5.07899 5.21346 5.26597 5.45297 5.57508 5.60480 5.66956 5.88485 5.96522 6.13330 6.33438 6.52106 6.60157 6.92773 7.06726 7.13042 7.28423 7.65892 7.67290 7.92945 8.07898 8.12337 8.41222 8.53684 8.79016 8.83372 9.01302 10.17923 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004777 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.668491 B = 5860.471646 C = 6878.140722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.110 4.110 4 H 0.099 0.901 5 C -0.153 4.153 6 C 0.446 3.554 7 F -0.187 7.187 8 F -0.188 7.188 9 F -0.167 7.167 10 C 0.499 3.501 11 O -0.533 6.533 12 N -0.629 5.629 13 C 0.020 3.980 14 C -0.093 4.093 15 C -0.221 4.221 16 C -0.115 4.115 17 C -0.145 4.145 18 C 0.106 3.894 19 C -0.479 4.479 20 H 0.075 0.925 21 C 0.081 3.919 22 N -0.796 5.796 23 Si 0.905 3.095 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.265 1.265 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.404 0.596 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 -0.356 7.059 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.132 4.132 4 H 0.117 0.883 5 C -0.191 4.191 6 C 0.392 3.608 7 F -0.169 7.169 8 F -0.170 7.170 9 F -0.149 7.149 10 C 0.285 3.715 11 O -0.411 6.411 12 N -0.270 5.270 13 C -0.074 4.074 14 C -0.113 4.113 15 C -0.241 4.241 16 C -0.133 4.133 17 C -0.165 4.165 18 C 0.103 3.897 19 C -0.509 4.509 20 H 0.093 0.907 21 C -0.137 4.137 22 N -0.421 5.421 23 Si 0.729 3.271 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.239 0.761 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.481 -0.318 7.536 13.738 hybrid contribution -0.490 0.088 -1.248 1.343 sum -11.971 -0.230 6.289 13.524 Atomic orbital electron populations 1.21864 0.94970 1.02206 1.02092 1.21392 0.96134 0.93049 1.04063 1.21345 0.94652 0.99561 0.97614 0.88318 1.22877 1.05576 0.88755 1.01881 1.20657 0.75499 0.91353 0.73281 1.93171 1.78187 1.85337 1.60183 1.93161 1.92932 1.85854 1.45042 1.93299 1.31164 1.96601 1.93791 1.20230 0.89387 0.77951 0.83942 1.90615 1.62672 1.49794 1.38026 1.42859 1.07365 1.67388 1.09403 1.17800 0.80940 1.10449 0.98201 1.20905 0.92769 0.99436 0.98166 1.20356 0.94209 1.11922 0.97631 1.20463 0.97649 1.01074 0.94161 1.20712 0.93043 1.04954 0.97768 1.17370 0.92586 0.89170 0.90591 1.19199 1.03611 1.38099 0.90016 0.90667 1.25806 0.94570 0.93115 1.00194 1.69809 1.23626 1.26186 1.22497 0.86433 0.80167 0.80846 0.79630 1.19114 1.20406 1.18929 0.92089 0.92508 0.92208 0.90294 0.90651 0.86692 0.85965 0.76073 0.86168 0.89170 0.89394 0.87243 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.74 37.16 0.36 -0.86 16 2 C -0.11 -1.16 5.37 -26.73 -0.14 -1.31 16 3 C -0.11 -1.38 2.14 -91.77 -0.20 -1.58 16 4 H 0.10 1.12 7.63 -51.93 -0.40 0.72 16 5 C -0.15 -1.69 4.54 -26.73 -0.12 -1.81 16 6 C 0.45 6.04 3.16 37.16 0.12 6.15 16 7 F -0.19 -2.50 16.77 2.25 0.04 -2.47 16 8 F -0.19 -2.49 17.32 2.25 0.04 -2.45 16 9 F -0.17 -2.90 14.34 2.25 0.03 -2.87 16 10 C 0.50 8.96 4.92 -10.99 -0.05 8.90 16 11 O -0.53 -11.10 12.28 5.55 0.07 -11.03 16 12 N -0.63 -12.66 5.02 -9.48 -0.05 -12.71 16 13 C 0.02 0.48 6.43 -83.17 -0.53 -0.06 16 14 C -0.09 -2.25 8.74 -39.44 -0.34 -2.60 16 15 C -0.22 -5.21 10.04 -39.35 -0.39 -5.60 16 16 C -0.11 -2.72 9.97 -39.99 -0.40 -3.12 16 17 C -0.14 -3.70 8.60 -39.28 -0.34 -4.04 16 18 C 0.11 2.73 5.47 -106.65 -0.58 2.15 16 19 C -0.48 -11.81 8.19 -37.86 -0.31 -12.12 16 20 H 0.08 1.74 7.55 -52.49 -0.40 1.34 16 21 C 0.08 1.94 5.10 -17.32 -0.09 1.85 16 22 N -0.80 -19.98 11.50 55.55 0.64 -19.34 16 23 Si 0.90 17.84 29.59 -169.99 -5.03 12.81 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 6.39 -51.93 -0.33 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.89 6.30 -51.93 -0.33 0.56 16 33 H 0.12 1.40 7.64 -51.93 -0.40 1.00 16 34 H 0.40 7.44 7.85 -40.82 -0.32 7.12 16 35 H 0.12 2.92 5.78 -52.48 -0.30 2.61 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.11 2.85 6.78 -52.49 -0.36 2.49 16 39 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.98 333.46 -6.76 -35.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.50 Total: 11.34 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.03 Total: -14.05 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.59 Total: -32.05 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.79 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.98 -6.76 -35.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410827232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.591 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds