Wall clock time and date at job start Fri Apr 10 2020 23:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 H 1.09006 * 109.46867 * 306.02395 * 3 2 1 5 5 C 1.53003 * 109.47217 * 66.02063 * 3 2 1 6 6 C 1.52999 * 109.47346 * 186.07222 * 5 3 2 7 7 F 1.39906 * 109.47233 * 61.94185 * 6 5 3 8 8 F 1.39894 * 109.47524 * 181.94474 * 6 5 3 9 9 F 1.39904 * 109.46789 * 301.94857 * 6 5 3 10 10 C 1.50699 * 109.47513 * 186.02262 * 3 2 1 11 11 O 1.21284 * 119.99755 * 275.78207 * 10 3 2 12 12 N 1.34774 * 119.99838 * 95.77822 * 10 3 2 13 13 C 1.39120 * 119.99747 * 184.98967 * 12 10 3 14 14 C 1.38644 * 120.28840 * 330.51116 * 13 12 10 15 15 C 1.38219 * 120.03960 * 179.97438 * 14 13 12 16 16 C 1.38871 * 120.61311 * 359.97438 * 15 14 13 17 17 C 1.36463 * 120.57813 * 359.97438 * 16 15 14 18 18 C 1.40741 * 119.94120 * 359.74888 * 17 16 15 19 19 C 1.41068 * 120.30030 * 180.27455 * 18 17 16 20 20 H 1.07999 * 120.00192 * 146.83950 * 19 18 17 21 21 C 1.39961 * 120.00100 * 326.84708 * 19 18 17 22 22 N 1.30851 * 119.99543 * 343.37608 * 21 19 18 23 23 Si 1.86791 * 120.00140 * 163.38121 * 21 19 18 24 24 H 1.48505 * 109.47194 * 59.99577 * 23 21 19 25 25 H 1.48497 * 109.47359 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47289 * 299.99627 * 23 21 19 27 27 H 1.08995 * 109.47480 * 182.10810 * 1 2 3 28 28 H 1.09000 * 109.46944 * 302.11065 * 1 2 3 29 29 H 1.08995 * 109.46708 * 62.10741 * 1 2 3 30 30 H 1.08995 * 109.47135 * 239.99351 * 2 1 3 31 31 H 1.09005 * 109.46966 * 119.99536 * 2 1 3 32 32 H 1.09000 * 109.47150 * 306.06895 * 5 3 2 33 33 H 1.08998 * 109.47374 * 66.06679 * 5 3 2 34 34 H 0.97001 * 120.00086 * 5.27043 * 12 10 3 35 35 H 1.08007 * 119.97999 * 359.97438 * 14 13 12 36 36 H 1.07998 * 119.69526 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.70665 * 179.97438 * 16 15 14 38 38 H 1.07995 * 120.03224 * 180.02562 * 17 16 15 39 39 H 0.96998 * 119.99808 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 1.6575 2.1187 1.3180 6 6 2.0325 3.6009 1.2585 7 9 1.3137 4.2230 0.2320 8 9 1.7234 4.2096 2.4795 9 9 3.4036 3.7252 1.0093 10 6 3.5397 1.4450 -0.1491 11 8 4.2463 1.3038 0.8265 12 7 4.0956 1.6043 -1.3665 13 6 5.4746 1.5032 -1.5201 14 6 6.3213 1.8447 -0.4767 15 6 7.6906 1.7418 -0.6347 16 6 8.2327 1.2970 -1.8334 17 6 7.4226 0.9532 -2.8764 18 6 6.0248 1.0433 -2.7396 19 6 5.1802 0.6843 -3.8109 20 1 4.2159 0.2400 -3.6129 21 6 5.5918 0.9039 -5.1305 22 7 6.5849 1.7189 -5.3789 23 14 4.7234 0.0337 -6.5368 24 1 3.2872 0.4115 -6.5413 25 1 5.3441 0.4337 -7.8251 26 1 4.8480 -1.4357 -6.3620 27 1 -0.3634 -1.0269 0.0378 28 1 -0.3633 0.5463 0.8705 29 1 -0.3632 0.4807 -0.9083 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.5836 2.0219 1.4777 33 1 2.1914 1.6415 2.1397 34 1 3.5346 1.7934 -2.1348 35 1 5.9107 2.1915 0.4602 36 1 8.3450 2.0097 0.1816 37 1 9.3047 1.2226 -1.9410 38 1 7.8536 0.6080 -3.8045 39 1 6.8699 1.8713 -6.2935 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410827232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:33 Heat of formation + Delta-G solvation = -202.524045 kcal Electronic energy + Delta-G solvation = -27218.329284 eV Core-core repulsion = 22902.249106 eV Total energy + Delta-G solvation = -4316.080178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.09762 -48.60497 -48.57339 -41.37736 -39.19434 -36.71393 -35.45880 -35.43088 -31.86321 -31.53375 -30.46491 -27.88528 -26.90770 -24.33352 -23.69909 -22.91416 -21.83220 -20.83918 -19.57859 -19.35958 -19.16692 -18.66971 -18.16680 -17.82071 -16.91537 -16.17167 -16.01902 -15.60321 -15.45426 -15.31372 -15.22149 -15.00649 -14.85057 -14.73582 -14.63116 -14.52715 -14.26443 -14.11975 -13.72700 -13.50503 -13.20221 -12.93314 -12.86984 -12.81050 -12.70296 -12.53377 -12.16806 -11.93121 -11.90022 -11.67392 -11.54390 -11.04902 -10.91329 -10.34473 -9.29091 -8.81008 -8.50635 -6.30283 0.85425 1.06075 1.42489 1.52052 1.55424 1.80502 1.82897 2.23261 2.37341 2.78704 2.82672 2.95982 3.11559 3.62856 3.72244 3.78321 3.97348 4.18462 4.31113 4.49003 4.51307 4.55439 4.64523 4.71460 4.77908 4.91530 5.10110 5.19115 5.22723 5.23387 5.29505 5.46079 5.47183 5.80047 5.83668 6.11976 6.17310 6.27608 6.64566 6.76214 6.95460 7.03591 7.41397 8.39589 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004777 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.668491 B = 5860.471646 C = 6878.140722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.101 4.101 4 H 0.116 0.884 5 C -0.144 4.144 6 C 0.441 3.559 7 F -0.186 7.186 8 F -0.187 7.187 9 F -0.195 7.195 10 C 0.497 3.503 11 O -0.562 6.562 12 N -0.635 5.635 13 C 0.018 3.982 14 C -0.110 4.110 15 C -0.226 4.226 16 C -0.120 4.120 17 C -0.168 4.168 18 C 0.078 3.922 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.041 3.959 22 N -0.831 5.831 23 Si 0.977 3.023 24 H -0.253 1.253 25 H -0.275 1.275 26 H -0.264 1.264 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.410 0.590 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.595 -0.923 7.035 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.122 4.122 4 H 0.134 0.866 5 C -0.182 4.182 6 C 0.387 3.613 7 F -0.167 7.167 8 F -0.168 7.168 9 F -0.177 7.177 10 C 0.285 3.715 11 O -0.442 6.442 12 N -0.277 5.277 13 C -0.077 4.077 14 C -0.130 4.130 15 C -0.246 4.246 16 C -0.139 4.139 17 C -0.188 4.188 18 C 0.074 3.926 19 C -0.527 4.527 20 H 0.102 0.898 21 C -0.174 4.174 22 N -0.457 5.457 23 Si 0.799 3.201 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.189 1.189 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.138 0.862 34 H 0.247 0.753 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.006 -0.878 7.531 15.926 hybrid contribution 0.309 0.316 -1.148 1.230 sum -13.697 -0.563 6.383 15.122 Atomic orbital electron populations 1.21851 0.92176 1.03308 1.03271 1.21401 0.98395 0.91171 1.03324 1.21397 0.90098 1.01490 0.99264 0.86612 1.22971 1.08166 0.86369 1.00679 1.21075 0.74245 0.92730 0.73265 1.93172 1.77881 1.85523 1.60171 1.93162 1.92751 1.86008 1.44886 1.93248 1.33622 1.96809 1.94009 1.21216 0.91755 0.75998 0.82508 1.90588 1.64200 1.50667 1.38759 1.42947 1.05985 1.68046 1.10694 1.17962 0.82995 1.09184 0.97577 1.21064 0.93403 1.00250 0.98280 1.20657 0.94423 1.11314 0.98208 1.20691 0.98810 1.00611 0.93752 1.20752 0.93676 1.06436 0.97895 1.17724 0.93058 0.90097 0.91737 1.19445 1.04071 1.38649 0.90556 0.89787 1.26656 0.95111 0.93167 1.02458 1.69882 1.25088 1.27300 1.23405 0.85315 0.79497 0.79223 0.76089 1.17677 1.20025 1.18897 0.91176 0.90696 0.91583 0.91577 0.91029 0.82342 0.86210 0.75339 0.86436 0.86932 0.87057 0.88601 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.74 71.98 0.70 -1.10 16 2 C -0.10 -2.00 5.37 30.60 0.16 -1.84 16 3 C -0.10 -2.34 2.14 -11.54 -0.02 -2.36 16 4 H 0.12 2.32 7.63 -2.38 -0.02 2.30 16 5 C -0.14 -2.81 4.54 30.59 0.14 -2.67 16 6 C 0.44 11.24 3.16 71.98 0.23 11.46 16 7 F -0.19 -4.61 16.77 44.97 0.75 -3.86 16 8 F -0.19 -4.63 17.32 44.97 0.78 -3.85 16 9 F -0.20 -6.77 14.34 44.97 0.64 -6.12 16 10 C 0.50 17.68 4.92 87.66 0.43 18.11 16 11 O -0.56 -23.60 12.28 -3.04 -0.04 -23.63 16 12 N -0.64 -25.75 5.02 -302.28 -1.52 -27.27 16 13 C 0.02 0.87 6.43 38.88 0.25 1.12 16 14 C -0.11 -5.44 8.74 22.36 0.20 -5.24 16 15 C -0.23 -10.74 10.04 22.42 0.22 -10.51 16 16 C -0.12 -5.77 9.97 22.01 0.22 -5.55 16 17 C -0.17 -8.82 8.60 22.47 0.19 -8.63 16 18 C 0.08 4.08 5.47 -21.18 -0.12 3.96 16 19 C -0.50 -24.82 8.19 23.38 0.19 -24.63 16 20 H 0.08 3.89 7.55 -2.91 -0.02 3.87 16 21 C 0.04 1.96 5.10 85.26 0.43 2.40 16 22 N -0.83 -42.37 11.50 21.83 0.25 -42.12 16 23 Si 0.98 36.12 29.59 68.60 2.03 38.15 16 24 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 25 H -0.28 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.65 6.39 -2.39 -0.02 0.63 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.16 1.72 6.30 -2.39 -0.02 1.71 16 33 H 0.12 2.49 7.64 -2.39 -0.02 2.47 16 34 H 0.41 15.14 7.85 -92.71 -0.73 14.42 16 35 H 0.12 5.84 5.78 -2.91 -0.02 5.82 16 36 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.10 5.19 6.78 -2.91 -0.02 5.17 16 39 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 Total: -1.00 -64.29 333.46 6.51 -57.78 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.37 Total: 36.41 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.23 Total: -25.48 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.27 Total: -69.39 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.04 Total: -23.63 kcal Atomic # 9 Polarization: -16.01 SS G_CDS: 2.18 Total: -13.83 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -64.29 6.51 -57.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410827232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.744 kcal (2) G-P(sol) polarization free energy of solvation -64.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds