Wall clock time and date at job start Fri Apr 10 2020 23:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 C 1.50701 * 109.46939 * 239.99797 * 2 1 3 5 5 H 1.07998 * 119.99698 * 239.99826 * 4 2 1 6 6 C 1.37867 * 120.00307 * 60.00299 * 4 2 1 7 7 N 1.31516 * 120.00097 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47490 * 90.00003 * 8 6 4 10 10 H 1.48502 * 109.47322 * 209.99880 * 8 6 4 11 11 H 1.48498 * 109.47228 * 329.99879 * 8 6 4 12 12 C 1.52999 * 109.46952 * 119.99820 * 2 1 3 13 13 N 1.46900 * 109.47245 * 300.00280 * 12 2 1 14 14 C 1.46897 * 111.00456 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46936 * 304.99684 * 15 14 13 17 17 O 1.42899 * 109.47784 * 64.99691 * 15 14 13 18 18 C 1.50701 * 109.47171 * 184.99910 * 15 14 13 19 19 C 1.38245 * 119.98014 * 264.99589 * 18 15 14 20 20 C 1.38182 * 120.03905 * 180.02562 * 19 18 15 21 21 C 1.38485 * 120.00179 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.02277 * 180.02562 * 21 20 19 23 23 C 1.38415 * 119.96215 * 0.02562 * 21 20 19 24 24 C 1.38336 * 119.98373 * 85.04026 * 18 15 14 25 25 Cl 1.73607 * 119.99998 * 0.02562 * 24 18 15 26 26 H 1.08994 * 109.47158 * 300.00340 * 1 2 3 27 27 H 1.09006 * 109.46836 * 60.00181 * 1 2 3 28 28 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47145 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47138 * 299.99634 * 3 2 1 31 31 H 1.09004 * 109.47521 * 59.99646 * 3 2 1 32 32 H 0.96998 * 120.00210 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47207 * 180.02562 * 12 2 1 34 34 H 1.09006 * 109.47076 * 59.99864 * 12 2 1 35 35 H 1.00908 * 111.00199 * 56.04187 * 13 12 2 36 36 H 1.09000 * 109.47013 * 59.99598 * 14 13 12 37 37 H 1.09004 * 109.46620 * 299.99956 * 14 13 12 38 38 H 0.96703 * 113.99608 * 59.99376 * 17 15 14 39 39 H 1.08002 * 119.97874 * 0.02562 * 19 18 15 40 40 H 1.08003 * 120.00241 * 180.02562 * 20 19 18 41 41 H 1.08006 * 120.02162 * 179.72706 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1618 -4.4123 10 1 2.4874 -0.1405 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0217 -0.6944 3.6704 15 6 1.4931 0.0542 4.8955 16 1 1.7823 1.1033 4.8330 17 8 0.0682 -0.0454 4.9366 18 6 2.0753 -0.5538 6.1455 19 6 1.3675 -1.5174 6.8394 20 6 1.9000 -2.0753 7.9860 21 6 3.1432 -1.6687 8.4410 22 9 3.6644 -2.2142 9.5617 23 6 3.8515 -0.7031 7.7468 24 6 3.3174 -0.1466 6.5984 25 17 4.2047 1.0649 5.7273 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 0.7083 1.1607 -3.4845 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.5437 0.0414 2.4401 36 1 3.1116 -0.6938 3.6870 37 1 1.6586 -1.7220 3.6873 38 1 -0.2612 -0.9529 4.9925 39 1 0.3977 -1.8344 6.4851 40 1 1.3466 -2.8283 8.5274 41 1 4.8192 -0.3822 8.1032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819363256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:01 Heat of formation + Delta-G solvation = -83.118380 kcal Electronic energy + Delta-G solvation = -23872.774161 eV Core-core repulsion = 20113.668481 eV Total energy + Delta-G solvation = -3759.105680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.32525 -40.11756 -37.64111 -36.77038 -36.36496 -33.66578 -31.77653 -31.38719 -30.69249 -27.45586 -25.53966 -25.19552 -24.19435 -23.51400 -22.54345 -21.42060 -18.51993 -18.38324 -17.26452 -17.23613 -16.12143 -15.99589 -15.63892 -15.49051 -15.12337 -14.65392 -14.37408 -14.11395 -13.97545 -13.62800 -13.47848 -13.17015 -12.62610 -12.43896 -12.09741 -11.87550 -11.82260 -11.62960 -11.53778 -11.12895 -11.06312 -10.88554 -10.64233 -10.61116 -10.35016 -10.16351 -10.04061 -9.41834 -9.37019 -9.13024 -8.87827 -8.60999 -8.27996 -7.73816 -5.90141 -4.00733 0.54307 0.62989 1.72546 2.96394 3.31438 3.38685 3.41572 3.77589 4.12320 4.15198 4.27660 4.45641 4.45927 4.78737 4.92523 5.01410 5.13285 5.27983 5.35240 5.41718 5.46992 5.62246 5.68694 5.83472 6.07039 6.26174 6.32759 6.39483 6.73233 6.90404 7.09839 7.18682 7.39856 7.42464 7.47898 7.70944 7.77687 7.83991 7.99062 8.23217 8.36353 8.56981 9.00786 9.64281 11.10318 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002767 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.067174 B =10115.320336 C =10293.736106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.076 3.924 13 N -0.680 5.680 14 C 0.035 3.965 15 C 0.145 3.855 16 H 0.126 0.874 17 O -0.547 6.547 18 C -0.111 4.111 19 C -0.072 4.072 20 C -0.145 4.145 21 C 0.107 3.893 22 F -0.134 7.134 23 C -0.145 4.145 24 C -0.003 4.003 25 Cl -0.040 7.040 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.258 0.742 33 H 0.055 0.945 34 H 0.012 0.988 35 H 0.344 0.656 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.369 0.631 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -3.907 21.882 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.052 4.052 13 N -0.313 5.313 14 C -0.095 4.095 15 C 0.086 3.914 16 H 0.144 0.856 17 O -0.352 6.352 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.164 4.164 21 C 0.088 3.912 22 F -0.112 7.112 23 C -0.164 4.164 24 C -0.030 4.030 25 Cl -0.010 7.010 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.164 0.836 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.217 0.783 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.426 -2.585 21.647 21.936 hybrid contribution 0.115 -2.028 -0.610 2.120 sum 2.541 -4.613 21.037 21.687 Atomic orbital electron populations 1.21839 0.98475 0.98324 1.00427 1.18079 0.92129 0.93055 0.89814 1.21642 0.97741 0.98190 1.00153 1.21112 1.31176 1.11805 0.90531 0.93052 1.24879 0.95077 0.94929 0.98669 1.69835 1.36826 1.22724 1.22901 0.86666 0.79192 0.79425 0.83088 1.20887 1.21293 1.20082 1.22167 0.98917 0.94321 0.89819 1.60521 1.17079 1.53202 1.00507 1.22531 1.01300 0.94807 0.90853 1.21056 0.80130 1.01583 0.88629 0.85606 1.86713 1.19783 1.32205 1.96460 1.20635 0.93721 0.97827 0.99141 1.20735 0.99902 0.94547 0.93885 1.21212 0.94780 1.02226 0.98187 1.17460 0.93301 0.95536 0.84925 1.91531 1.86567 1.84245 1.48900 1.20983 1.01911 0.98095 0.95421 1.20469 0.93391 0.94813 0.94320 1.98432 1.74359 1.53184 1.75049 0.96850 0.89827 0.96301 0.96352 0.90751 0.96009 0.93187 0.92611 0.96968 0.83553 0.90331 0.95654 0.78326 0.83961 0.83935 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.12 -2.93 8.09 37.15 0.30 -2.63 16 4 C -0.51 -13.65 8.01 -34.44 -0.28 -13.93 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 8 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 13 N -0.68 -11.83 5.71 -113.78 -0.65 -12.48 16 14 C 0.04 0.49 5.34 -3.83 -0.02 0.47 16 15 C 0.15 1.73 2.96 -27.89 -0.08 1.65 16 16 H 0.13 1.69 7.12 -51.93 -0.37 1.32 16 17 O -0.55 -6.27 12.51 -35.23 -0.44 -6.71 16 18 C -0.11 -1.14 5.07 -104.58 -0.53 -1.67 16 19 C -0.07 -0.59 9.30 -39.60 -0.37 -0.96 16 20 C -0.15 -1.14 10.03 -39.51 -0.40 -1.53 16 21 C 0.11 0.97 7.30 -39.43 -0.29 0.69 16 22 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 23 C -0.14 -1.34 9.81 -39.48 -0.39 -1.73 16 24 C 0.00 -0.03 6.31 -39.51 -0.25 -0.28 16 25 Cl -0.04 -0.44 27.20 -51.86 -1.41 -1.85 16 26 H 0.01 0.27 6.57 -51.93 -0.34 -0.07 16 27 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 31 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.34 6.04 6.33 -39.29 -0.25 5.79 16 36 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.37 2.86 7.32 45.56 0.33 3.19 16 39 H 0.14 0.81 6.40 -52.49 -0.34 0.47 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -28.68 347.67 -8.83 -37.51 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.90 Total: 5.38 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.20 Total: -17.93 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.13 Total: -36.47 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.44 Total: -6.71 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.41 Total: -1.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.68 -8.83 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819363256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.611 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds