Wall clock time and date at job start Fri Apr 10 2020 23:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 C 1.50701 * 109.46939 * 239.99797 * 2 1 3 5 5 H 1.07998 * 119.99698 * 239.99826 * 4 2 1 6 6 C 1.37867 * 120.00307 * 60.00299 * 4 2 1 7 7 N 1.31516 * 120.00097 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47490 * 90.00003 * 8 6 4 10 10 H 1.48502 * 109.47322 * 209.99880 * 8 6 4 11 11 H 1.48498 * 109.47228 * 329.99879 * 8 6 4 12 12 C 1.52999 * 109.46952 * 119.99820 * 2 1 3 13 13 N 1.46900 * 109.47245 * 300.00280 * 12 2 1 14 14 C 1.46897 * 111.00456 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46936 * 304.99684 * 15 14 13 17 17 O 1.42899 * 109.47784 * 64.99691 * 15 14 13 18 18 C 1.50701 * 109.47171 * 184.99910 * 15 14 13 19 19 C 1.38245 * 119.98014 * 264.99589 * 18 15 14 20 20 C 1.38182 * 120.03905 * 180.02562 * 19 18 15 21 21 C 1.38485 * 120.00179 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.02277 * 180.02562 * 21 20 19 23 23 C 1.38415 * 119.96215 * 0.02562 * 21 20 19 24 24 C 1.38336 * 119.98373 * 85.04026 * 18 15 14 25 25 Cl 1.73607 * 119.99998 * 0.02562 * 24 18 15 26 26 H 1.08994 * 109.47158 * 300.00340 * 1 2 3 27 27 H 1.09006 * 109.46836 * 60.00181 * 1 2 3 28 28 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47145 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47138 * 299.99634 * 3 2 1 31 31 H 1.09004 * 109.47521 * 59.99646 * 3 2 1 32 32 H 0.96998 * 120.00210 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47207 * 180.02562 * 12 2 1 34 34 H 1.09006 * 109.47076 * 59.99864 * 12 2 1 35 35 H 1.00908 * 111.00199 * 56.04187 * 13 12 2 36 36 H 1.09000 * 109.47013 * 59.99598 * 14 13 12 37 37 H 1.09004 * 109.46620 * 299.99956 * 14 13 12 38 38 H 0.96703 * 113.99608 * 59.99376 * 17 15 14 39 39 H 1.08002 * 119.97874 * 0.02562 * 19 18 15 40 40 H 1.08003 * 120.00241 * 180.02562 * 20 19 18 41 41 H 1.08006 * 120.02162 * 179.72706 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1618 -4.4123 10 1 2.4874 -0.1405 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0217 -0.6944 3.6704 15 6 1.4931 0.0542 4.8955 16 1 1.7823 1.1033 4.8330 17 8 0.0682 -0.0454 4.9366 18 6 2.0753 -0.5538 6.1455 19 6 1.3675 -1.5174 6.8394 20 6 1.9000 -2.0753 7.9860 21 6 3.1432 -1.6687 8.4410 22 9 3.6644 -2.2142 9.5617 23 6 3.8515 -0.7031 7.7468 24 6 3.3174 -0.1466 6.5984 25 17 4.2047 1.0649 5.7273 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 0.7083 1.1607 -3.4845 33 1 3.1300 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.5437 0.0414 2.4401 36 1 3.1116 -0.6938 3.6870 37 1 1.6586 -1.7220 3.6873 38 1 -0.2612 -0.9529 4.9925 39 1 0.3977 -1.8344 6.4851 40 1 1.3466 -2.8283 8.5274 41 1 4.8192 -0.3822 8.1032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819363256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:01 Heat of formation + Delta-G solvation = -100.280111 kcal Electronic energy + Delta-G solvation = -23873.518349 eV Core-core repulsion = 20113.668481 eV Total energy + Delta-G solvation = -3759.849868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.03089 -40.88857 -38.85637 -37.83713 -37.48153 -35.21862 -33.07550 -32.11723 -32.03533 -28.59933 -27.47857 -27.22701 -25.55300 -24.21052 -23.72348 -22.29088 -20.31484 -19.16835 -18.20808 -17.99841 -17.76669 -17.12072 -16.73982 -16.49653 -16.29985 -15.89502 -15.44097 -15.28384 -15.05154 -14.59517 -14.47882 -14.38345 -14.13668 -13.89081 -13.56161 -13.23417 -13.00458 -12.85593 -12.68672 -12.54104 -12.43112 -12.40176 -12.26087 -12.09084 -12.05322 -11.80779 -11.39418 -11.29186 -10.83931 -10.58165 -10.32869 -10.09460 -9.68737 -9.15091 -7.95339 -6.12459 -0.16919 -0.03760 0.96045 1.42561 1.44967 1.53195 2.27324 2.47290 3.04644 3.24335 3.26702 3.35658 3.60877 3.82639 3.86817 4.05630 4.08096 4.24446 4.36933 4.55265 4.62120 4.71296 4.74924 4.82039 4.89089 4.91263 5.00746 5.05126 5.20240 5.24983 5.31777 5.45269 5.55716 5.60984 5.71523 5.79355 6.17290 6.26275 6.36377 6.51179 6.66442 6.75463 6.97680 7.55264 9.02739 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002767 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.067174 B =10115.320336 C =10293.736106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 C -0.106 4.106 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.091 3.909 13 N -0.684 5.684 14 C 0.038 3.962 15 C 0.159 3.841 16 H 0.108 0.892 17 O -0.556 6.556 18 C -0.122 4.122 19 C -0.067 4.067 20 C -0.137 4.137 21 C 0.100 3.900 22 F -0.138 7.138 23 C -0.149 4.149 24 C -0.014 4.014 25 Cl -0.055 7.055 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.046 0.954 34 H 0.012 0.988 35 H 0.345 0.655 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.386 0.614 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -5.286 23.264 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 C -0.164 4.164 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.038 4.038 13 N -0.317 5.317 14 C -0.092 4.092 15 C 0.100 3.900 16 H 0.125 0.875 17 O -0.364 6.364 18 C -0.123 4.123 19 C -0.085 4.085 20 C -0.156 4.156 21 C 0.080 3.920 22 F -0.116 7.116 23 C -0.169 4.169 24 C -0.041 4.041 25 Cl -0.026 7.026 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.165 0.835 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.237 0.763 39 H 0.188 0.812 40 H 0.187 0.813 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.849 -3.978 23.047 23.461 hybrid contribution 0.276 -1.620 -0.960 1.903 sum 2.125 -5.598 22.087 22.884 Atomic orbital electron populations 1.21662 0.98058 0.98146 1.00013 1.18126 0.92472 0.92717 0.90671 1.21481 0.96972 0.98601 0.99367 1.21453 1.31235 1.11901 0.92002 0.93682 1.25532 0.95372 0.95618 1.01169 1.69971 1.37449 1.23585 1.23251 0.85784 0.78731 0.78435 0.79985 1.20404 1.21205 1.19816 1.21806 0.98139 0.93978 0.89848 1.60400 1.17044 1.53556 1.00731 1.22561 1.00963 0.95616 0.90020 1.20689 0.80453 1.00384 0.88524 0.87476 1.86684 1.19303 1.33978 1.96433 1.20543 0.93944 0.98897 0.98965 1.21050 1.00639 0.93383 0.93450 1.21518 0.94161 1.02069 0.97835 1.17639 0.93885 0.95571 0.84857 1.91525 1.86725 1.84268 1.49093 1.21086 1.02446 0.98176 0.95151 1.20552 0.93664 0.95042 0.94825 1.98425 1.74773 1.53943 1.75459 0.94723 0.92673 0.96249 0.97226 0.93354 0.94753 0.93348 0.93594 0.97011 0.83485 0.90998 0.94144 0.76324 0.81184 0.81276 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 7.92 71.98 0.57 -5.07 16 2 C 0.06 2.91 0.57 -52.93 -0.03 2.88 16 3 C -0.11 -5.24 8.09 71.98 0.58 -4.65 16 4 C -0.53 -28.42 8.01 25.60 0.21 -28.22 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.02 1.20 5.15 84.65 0.44 1.63 16 7 N -0.90 -50.59 9.35 21.44 0.20 -50.39 16 8 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.09 3.69 4.59 86.30 0.40 4.09 16 13 N -0.68 -22.94 5.71 -513.90 -2.94 -25.88 16 14 C 0.04 0.99 5.34 86.30 0.46 1.45 16 15 C 0.16 3.52 2.96 29.85 0.09 3.61 16 16 H 0.11 2.80 7.12 -2.38 -0.02 2.78 16 17 O -0.56 -11.38 12.51 -148.98 -1.86 -13.25 16 18 C -0.12 -2.25 5.07 -19.84 -0.10 -2.35 16 19 C -0.07 -0.88 9.30 22.26 0.21 -0.67 16 20 C -0.14 -1.71 10.03 22.32 0.22 -1.48 16 21 C 0.10 1.60 7.30 22.37 0.16 1.77 16 22 F -0.14 -2.37 17.27 44.97 0.78 -1.59 16 23 C -0.15 -2.57 9.81 22.34 0.22 -2.35 16 24 C -0.01 -0.27 6.31 22.32 0.14 -0.13 16 25 Cl -0.06 -1.22 27.20 -2.72 -0.07 -1.29 16 26 H 0.03 1.42 6.57 -2.39 -0.02 1.40 16 27 H 0.05 2.89 6.07 -2.38 -0.01 2.88 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 2.62 6.07 -2.38 -0.01 2.61 16 31 H 0.03 1.55 7.60 -2.39 -0.02 1.53 16 32 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.34 11.48 6.33 -89.69 -0.57 10.92 16 36 H 0.07 1.98 7.95 -2.39 -0.02 1.97 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.39 4.68 7.32 -74.06 -0.54 4.13 16 39 H 0.17 1.20 6.40 -2.91 -0.02 1.18 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -61.04 347.67 1.65 -59.39 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.04 Total: 17.14 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.56 Total: -29.48 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.73 Total: -76.26 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.86 Total: -13.25 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.29 kcal Total: -61.04 1.65 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819363256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.887 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds