Wall clock time and date at job start Fri Apr 10 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99978 * 2 1 4 4 H 1.48496 * 109.47624 * 270.00401 * 3 2 1 5 5 H 1.48497 * 109.47266 * 30.00691 * 3 2 1 6 6 H 1.48504 * 109.47025 * 150.00506 * 3 2 1 7 7 C 1.38818 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99867 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99789 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49130 * 324.99333 * 10 9 7 12 12 C 1.53035 * 109.52225 * 204.92043 * 10 9 7 13 13 C 1.53040 * 109.54051 * 178.66498 * 12 10 9 14 14 C 1.53196 * 109.31281 * 61.36232 * 13 12 10 15 15 N 1.46930 * 108.77000 * 305.36489 * 14 13 12 16 16 C 1.34778 * 120.63216 * 233.58262 * 15 14 13 17 17 O 1.21648 * 120.00304 * 172.38351 * 16 15 14 18 18 C 1.46990 * 119.99922 * 352.39055 * 16 15 14 19 19 C 1.35843 * 125.11983 * 172.18172 * 18 16 15 20 20 C 1.46101 * 106.06948 * 179.86316 * 19 18 16 21 21 C 1.39445 * 135.08018 * 180.13657 * 20 19 18 22 22 N 1.31673 * 120.07971 * 180.28985 * 21 20 19 23 23 C 1.32308 * 122.14251 * 359.97438 * 22 21 20 24 24 C 1.37755 * 121.58080 * 0.02562 * 23 22 21 25 25 C 1.39239 * 118.95909 * 359.97210 * 24 23 22 26 26 O 1.34279 * 134.38363 * 180.02562 * 25 24 23 27 27 C 1.46925 * 118.74047 * 53.61462 * 15 14 13 28 28 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00217 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.45928 * 298.67800 * 12 10 9 31 31 H 1.09004 * 109.46687 * 58.64155 * 12 10 9 32 32 H 1.09001 * 109.49705 * 301.40831 * 13 12 10 33 33 H 1.08995 * 109.52692 * 181.32715 * 13 12 10 34 34 H 1.08993 * 109.58732 * 185.58440 * 14 13 12 35 35 H 1.08990 * 109.58968 * 65.15145 * 14 13 12 36 36 H 1.08002 * 126.96503 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.96079 * 0.30355 * 21 20 19 38 38 H 1.07992 * 119.21351 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.52319 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.58386 * 186.59968 * 27 15 14 41 41 H 1.09000 * 109.70368 * 66.23883 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5510 -0.5900 12 6 1.1809 -4.7537 -0.6083 13 6 1.9576 -6.0720 -0.6390 14 6 2.3198 -6.4802 0.7924 15 7 3.0392 -5.3705 1.4328 16 6 4.2428 -5.5717 2.0050 17 8 4.8906 -4.6244 2.4083 18 6 4.7728 -6.9360 2.1416 19 6 6.0269 -7.2490 2.5595 20 6 6.1064 -8.7077 2.5428 21 6 7.0899 -9.6466 2.8523 22 7 6.8392 -10.9325 2.7213 23 6 5.6684 -11.3821 2.2999 24 6 4.6415 -10.5242 1.9727 25 6 4.8460 -9.1520 2.0906 26 8 4.0882 -8.0666 1.8651 27 6 2.4214 -4.0375 1.4381 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 0.2818 -4.8762 -0.0042 31 1 0.9005 -4.4737 -1.6238 32 1 2.8693 -5.9435 -1.2225 33 1 1.3412 -6.8476 -1.0935 34 1 2.9570 -7.3642 0.7702 35 1 1.4099 -6.6969 1.3519 36 1 6.8065 -6.5593 2.8476 37 1 8.0584 -9.3185 3.2000 38 1 5.5140 -12.4472 2.2103 39 1 3.6924 -10.9099 1.6308 40 1 3.1255 -3.3101 1.8419 41 1 1.5200 -4.0527 2.0508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999610050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:45 Heat of formation + Delta-G solvation = 31.601919 kcal Electronic energy + Delta-G solvation = -25695.591419 eV Core-core repulsion = 21963.813196 eV Total energy + Delta-G solvation = -3731.778223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.09542 -40.05667 -39.17365 -37.49569 -34.60221 -33.32899 -32.51721 -32.00661 -31.27080 -30.26248 -28.38618 -26.04538 -24.55919 -23.90288 -23.56994 -22.10100 -21.96587 -20.75364 -19.56620 -18.55695 -17.77527 -17.13497 -16.92114 -16.36674 -15.91867 -15.68819 -15.12203 -14.90771 -14.63819 -14.43683 -14.16115 -13.83746 -13.75022 -13.62946 -13.54416 -13.27730 -12.84231 -12.49128 -12.32802 -11.97679 -11.39410 -11.06220 -10.87688 -10.75506 -10.67269 -10.62619 -10.27150 -10.23327 -10.10619 -9.89477 -9.79146 -9.69981 -9.15293 -8.81445 -8.46029 -7.05527 -5.82580 -3.12845 0.09519 0.84074 1.45196 1.97935 2.91964 3.04898 3.34161 3.42646 3.48370 3.50533 3.89799 3.98963 4.12466 4.47232 4.54222 4.56592 4.69120 4.92909 4.99744 5.04190 5.19241 5.25624 5.30049 5.41602 5.43815 5.50524 5.71679 5.76494 5.80965 5.85021 5.95730 5.97550 6.09117 6.13308 6.27520 6.36481 6.47906 6.61526 6.73922 6.90819 7.38478 7.49624 7.68220 7.99881 8.35298 9.47370 10.00279 10.35689 11.39515 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.002837 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.540497 B = 9866.727671 C =10645.960639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.128 4.128 14 C 0.095 3.905 15 N -0.591 5.591 16 C 0.589 3.411 17 O -0.512 6.512 18 C -0.013 4.013 19 C -0.104 4.104 20 C -0.196 4.196 21 C 0.173 3.827 22 N -0.495 5.495 23 C 0.114 3.886 24 C -0.160 4.160 25 C 0.093 3.907 26 O -0.170 6.170 27 C 0.091 3.909 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -23.861 3.146 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.167 4.167 14 C -0.027 4.027 15 N -0.323 5.323 16 C 0.374 3.626 17 O -0.389 6.389 18 C -0.062 4.062 19 C -0.126 4.126 20 C -0.199 4.199 21 C 0.009 3.991 22 N -0.205 5.205 23 C -0.036 4.036 24 C -0.180 4.180 25 C 0.038 3.962 26 O -0.070 6.070 27 C -0.033 4.033 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.164 0.836 40 H 0.112 0.888 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.831 -23.786 3.423 25.603 hybrid contribution -0.591 1.503 -0.144 1.622 sum 8.240 -22.283 3.279 23.983 Atomic orbital electron populations 1.69660 1.05145 1.25851 1.57277 1.24759 0.95526 0.97809 1.02514 0.86182 0.78829 0.83611 0.77570 1.21638 1.21709 1.20541 1.19277 0.91136 0.83916 1.43254 0.90962 1.42378 1.05827 0.99525 1.88008 1.20484 0.95086 0.86563 0.92144 0.92929 1.21847 0.98701 0.93980 1.02012 1.21880 1.00993 0.98322 0.95524 1.22202 0.97516 0.89049 0.93917 1.48245 1.17839 1.12028 1.54147 1.16841 0.81802 0.84455 0.79485 1.90908 1.57806 1.39666 1.50554 1.22431 0.92596 0.85716 1.05471 1.22691 0.96608 0.92724 1.00617 1.20971 0.96607 0.94667 1.07696 1.22470 0.97835 0.86690 0.92061 1.67809 1.22076 1.15852 1.14770 1.22614 0.87312 1.00235 0.93400 1.21062 1.02845 0.87656 1.06464 1.20094 0.89879 0.89210 0.97040 1.84284 1.39705 1.12423 1.70628 1.22978 0.97974 0.80612 1.01748 0.93411 0.78001 0.91902 0.91187 0.91565 0.90743 0.88426 0.91001 0.80643 0.81627 0.81422 0.83573 0.88753 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.46 5.13 -53.31 -0.27 -17.73 16 10 C 0.17 3.27 2.92 -67.82 -0.20 3.07 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.13 -1.95 5.36 -26.69 -0.14 -2.09 16 13 C -0.13 -1.54 6.08 -26.61 -0.16 -1.71 16 14 C 0.10 1.15 6.08 -3.71 -0.02 1.13 16 15 N -0.59 -9.10 2.97 -174.20 -0.52 -9.62 16 16 C 0.59 9.41 7.65 -12.71 -0.10 9.31 16 17 O -0.51 -9.82 16.26 5.24 0.09 -9.73 16 18 C -0.01 -0.17 6.73 -36.90 -0.25 -0.42 16 19 C -0.10 -1.18 10.81 -37.29 -0.40 -1.59 16 20 C -0.20 -2.03 6.43 -105.22 -0.68 -2.71 16 21 C 0.17 1.54 11.28 -17.17 -0.19 1.34 16 22 N -0.49 -4.60 10.34 -13.00 -0.13 -4.74 16 23 C 0.11 0.84 11.13 -17.52 -0.20 0.65 16 24 C -0.16 -1.24 10.13 -39.39 -0.40 -1.64 16 25 C 0.09 0.97 7.48 -38.13 -0.29 0.68 16 26 O -0.17 -1.96 7.09 3.71 0.03 -1.93 16 27 C 0.09 1.67 6.03 -3.71 -0.02 1.64 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 29 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.08 4.22 -53.36 -0.23 0.86 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.09 2.00 7.00 -51.93 -0.36 1.64 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -32.42 343.58 -8.33 -40.75 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.10 Total: 6.96 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.29 Total: 0.43 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.20 Total: -59.05 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.11 Total: -11.67 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.42 -8.33 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999610050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.348 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds