Wall clock time and date at job start Fri Apr 10 2020 23:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99621 * 2 1 4 4 H 1.48502 * 109.46909 * 239.99753 * 3 2 1 5 5 H 1.48494 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46943 * 119.99648 * 3 2 1 7 7 C 1.38805 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99973 * 359.72352 * 7 2 1 10 10 C 1.47868 * 126.94413 * 0.30408 * 9 7 2 11 11 C 1.56016 * 105.10441 * 181.97579 * 10 9 7 12 12 H 1.09003 * 116.25163 * 158.83369 * 11 10 9 13 13 C 1.57085 * 99.60710 * 32.80455 * 11 10 9 14 14 C 1.49288 * 126.94493 * 179.97438 * 9 7 2 15 15 H 1.09006 * 116.15162 * 15.86910 * 14 9 7 16 16 C 1.58435 * 103.70481 * 246.54992 * 14 9 7 17 17 N 1.47866 * 104.82909 * 288.54740 * 16 14 9 18 18 C 1.34777 * 126.94261 * 182.30512 * 17 16 14 19 19 O 1.21554 * 120.00111 * 174.12774 * 18 17 16 20 20 C 1.47854 * 120.00014 * 354.11870 * 18 17 16 21 21 C 1.39704 * 120.07288 * 5.94867 * 20 18 17 22 22 C 1.38057 * 120.14634 * 179.97438 * 21 20 18 23 23 C 1.38097 * 120.29801 * 359.97438 * 22 21 20 24 24 C 1.39669 * 120.14542 * 359.97438 * 23 22 21 25 25 C 1.47857 * 120.07808 * 180.02562 * 24 23 22 26 26 N 1.34782 * 119.99702 * 0.02562 * 25 24 23 27 27 O 1.21545 * 120.00101 * 179.97438 * 25 24 23 28 28 C 1.39301 * 120.07540 * 185.66612 * 20 18 17 29 29 H 0.96999 * 120.00398 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.31377 * 300.88350 * 10 9 7 31 31 H 1.09003 * 110.31580 * 62.96873 * 10 9 7 32 32 H 1.09010 * 112.36709 * 64.27204 * 13 11 10 33 33 H 1.08999 * 112.37240 * 191.71008 * 13 11 10 34 34 H 1.08994 * 110.19244 * 169.85831 * 16 14 9 35 35 H 1.08999 * 110.78168 * 47.53771 * 16 14 9 36 36 H 1.07998 * 119.92878 * 0.02562 * 21 20 18 37 37 H 1.08004 * 119.85132 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.93197 * 180.02562 * 23 22 21 39 39 H 0.97000 * 119.99848 * 359.97438 * 26 25 24 40 40 H 0.97000 * 119.99339 * 180.02562 * 26 25 24 41 41 H 1.07998 * 120.14039 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 0.0047 10 6 -0.1422 -2.5669 0.0049 11 6 -0.3637 -4.1101 0.0638 12 1 -1.3361 -4.4441 0.4256 13 6 0.8839 -4.5213 0.9253 14 6 1.9104 -3.7616 0.0044 15 1 2.9657 -3.8346 0.2672 16 6 1.4873 -4.3494 -1.4048 17 7 0.0319 -4.5862 -1.2946 18 6 -0.7746 -5.1235 -2.2313 19 8 -1.9376 -5.3600 -1.9688 20 6 -0.2446 -5.4251 -3.5782 21 6 1.1180 -5.2709 -3.8451 22 6 1.6145 -5.5526 -5.1021 23 6 0.7694 -5.9888 -6.1034 24 6 -0.5948 -6.1482 -5.8499 25 6 -1.4983 -6.6158 -6.9229 26 7 -1.0055 -6.8892 -8.1472 27 8 -2.6851 -6.7546 -6.7005 28 6 -1.1019 -5.8693 -4.5824 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5816 -2.0877 0.8798 31 1 -0.5737 -2.1557 -0.9078 32 1 0.8446 -4.1109 1.9344 33 1 1.0491 -5.5987 0.9283 34 1 2.0101 -5.2869 -1.5937 35 1 1.6951 -3.6339 -2.2004 36 1 1.7846 -4.9314 -3.0662 37 1 2.6687 -5.4314 -5.3033 38 1 1.1642 -6.2078 -7.0845 39 1 -0.0582 -6.7788 -8.3245 40 1 -1.5983 -7.1956 -8.8512 41 1 -2.1553 -5.9949 -4.3798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032482289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:39 Heat of formation + Delta-G solvation = 10.708642 kcal Electronic energy + Delta-G solvation = -26134.776010 eV Core-core repulsion = 22402.091786 eV Total energy + Delta-G solvation = -3732.684223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94280 -41.00420 -39.68692 -38.64728 -35.59056 -34.98345 -33.67415 -32.15884 -32.09223 -30.44628 -30.20942 -27.13520 -26.07127 -25.11418 -24.33097 -22.27162 -21.85518 -21.30126 -20.51358 -19.39021 -18.63197 -17.94057 -17.86434 -17.30883 -16.86523 -16.58541 -16.35995 -15.89952 -15.78913 -15.54866 -15.19987 -14.83809 -14.80494 -14.77746 -13.99555 -13.67332 -13.51095 -13.44268 -13.12139 -12.91451 -12.73046 -12.65166 -12.52070 -12.21360 -12.15414 -12.01040 -11.67643 -11.51202 -11.31816 -11.09148 -10.80738 -10.66734 -10.16240 -10.09621 -9.58135 -8.88976 -7.82782 -5.18939 -0.39718 -0.04656 1.48988 1.50982 1.51924 1.57988 1.81779 2.02929 2.45045 2.50477 2.82734 3.30680 3.33848 3.47893 3.68108 3.75550 3.78766 3.87481 4.00504 4.02092 4.13104 4.20217 4.34775 4.47519 4.55599 4.60992 4.81231 4.85930 4.87959 5.02124 5.11510 5.14915 5.19031 5.24000 5.25876 5.46073 5.51808 5.66215 5.72080 5.83056 6.10139 6.36434 6.55143 7.02681 7.03706 7.23387 7.72631 8.42713 9.28298 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.003525 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.537958 B = 7940.648621 C = 8432.759139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.073 4.073 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.308 1.308 6 H -0.273 1.273 7 C -0.229 4.229 8 H 0.102 0.898 9 N -0.614 5.614 10 C 0.187 3.813 11 C 0.097 3.903 12 H 0.108 0.892 13 C -0.128 4.128 14 C 0.139 3.861 15 H 0.147 0.853 16 C 0.074 3.926 17 N -0.600 5.600 18 C 0.559 3.441 19 O -0.596 6.596 20 C -0.153 4.153 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.044 4.044 24 C -0.162 4.162 25 C 0.562 3.438 26 N -0.821 5.821 27 O -0.593 6.593 28 C -0.030 4.030 29 H 0.242 0.758 30 H 0.018 0.982 31 H -0.005 1.005 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.420 0.580 40 H 0.415 0.585 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.750 -15.555 -13.248 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.265 4.265 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.235 1.235 6 H -0.199 1.199 7 C -0.357 4.357 8 H 0.119 0.881 9 N -0.338 5.338 10 C 0.061 3.939 11 C -0.006 4.006 12 H 0.126 0.874 13 C -0.167 4.167 14 C 0.033 3.967 15 H 0.164 0.836 16 C -0.049 4.049 17 N -0.332 5.332 18 C 0.351 3.649 19 O -0.479 6.479 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.138 4.138 23 C -0.062 4.062 24 C -0.165 4.165 25 C 0.348 3.652 26 N -0.386 5.386 27 O -0.475 6.475 28 C -0.050 4.050 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.013 0.987 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.193 0.807 37 H 0.201 0.799 38 H 0.199 0.801 39 H 0.254 0.746 40 H 0.247 0.753 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.389 -15.473 -12.886 22.658 hybrid contribution -0.832 1.456 -0.113 1.681 sum 9.557 -14.018 -12.999 21.373 Atomic orbital electron populations 1.70165 1.06763 1.25153 1.58776 1.25687 0.96302 1.01333 1.03188 0.85161 0.76931 0.78821 0.78466 1.19927 1.23469 1.19920 1.19544 0.91416 0.82895 1.41873 0.88062 1.45496 1.01182 1.01300 1.85858 1.21511 0.85383 0.89842 0.97154 1.24196 0.99741 0.94372 0.82268 0.87430 1.24113 0.93526 1.01029 0.98068 1.24228 0.98390 0.82835 0.91275 0.83585 1.24214 0.78929 1.00883 1.00899 1.49059 1.10506 1.58785 1.14800 1.18446 0.84699 0.76980 0.84804 1.90712 1.19066 1.56502 1.81661 1.19773 0.96061 1.07034 0.92776 1.23192 0.93660 0.93210 1.00626 1.21655 1.02538 0.98407 0.91183 1.21992 0.90028 0.92722 1.01460 1.19851 0.95715 1.07587 0.93363 1.18363 0.86705 0.76190 0.83905 1.43458 1.14892 1.69143 1.11144 1.90824 1.18622 1.55034 1.82987 1.21197 0.99500 0.92390 0.91930 0.94868 0.96343 0.98717 0.89818 0.87838 0.86738 0.90997 0.80675 0.79936 0.80088 0.74649 0.75256 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.20 10.56 21.65 0.23 -57.97 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 3 Si 0.98 44.18 29.55 68.60 2.03 46.20 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.31 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.23 -11.59 10.37 84.03 0.87 -10.72 16 8 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.61 -28.21 3.02 -643.10 -1.94 -30.15 16 10 C 0.19 9.32 4.75 87.16 0.41 9.73 16 11 C 0.10 3.82 5.20 46.93 0.24 4.06 16 12 H 0.11 4.33 8.03 -2.39 -0.02 4.31 16 13 C -0.13 -3.87 6.86 33.60 0.23 -3.64 16 14 C 0.14 4.38 5.63 47.96 0.27 4.65 16 15 H 0.15 3.59 8.14 -2.38 -0.02 3.58 16 16 C 0.07 2.11 4.36 88.06 0.38 2.50 16 17 N -0.60 -21.94 2.95 -770.34 -2.27 -24.22 16 18 C 0.56 22.37 7.86 86.79 0.68 23.05 16 19 O -0.60 -28.77 16.69 -3.88 -0.06 -28.83 16 20 C -0.15 -4.91 5.87 -20.12 -0.12 -5.03 16 21 C -0.09 -1.98 8.77 22.58 0.20 -1.78 16 22 C -0.12 -1.66 10.02 22.19 0.22 -1.44 16 23 C -0.04 -0.58 9.54 22.58 0.22 -0.36 16 24 C -0.16 -3.80 5.87 -20.12 -0.12 -3.92 16 25 C 0.56 13.37 8.05 86.79 0.70 14.06 16 26 N -0.82 -9.03 8.82 -175.59 -1.55 -10.58 16 27 O -0.59 -20.78 17.18 -3.86 -0.07 -20.84 16 28 C -0.03 -0.98 9.14 22.79 0.21 -0.77 16 29 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.02 1.04 7.45 -2.39 -0.02 1.02 16 31 H -0.01 -0.32 7.68 -2.39 -0.02 -0.34 16 32 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.12 2.17 6.88 -2.39 -0.02 2.16 16 35 H 0.07 2.24 6.86 -2.39 -0.02 2.23 16 36 H 0.18 3.47 2.78 -4.38 -0.01 3.45 16 37 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.18 0.41 6.39 -2.91 -0.02 0.39 16 39 H 0.42 1.10 6.85 -92.71 -0.64 0.47 16 40 H 0.41 3.58 8.93 -92.71 -0.83 2.76 16 41 H 0.11 4.29 7.24 -2.91 -0.02 4.27 16 Total: -1.00 -87.64 335.58 0.87 -86.77 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.36 Total: 12.75 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: 4.87 Total: 26.89 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.54 Total: -122.93 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.13 Total: -49.68 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -87.64 0.87 -86.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032482289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.482 kcal (2) G-P(sol) polarization free energy of solvation -87.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds