Wall clock time and date at job start Fri Apr 10 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38868 * 119.40644 * 2 1 4 4 C 1.38205 * 119.71157 * 180.22985 * 3 2 1 5 5 C 1.39304 * 118.33340 * 359.51159 * 4 3 2 6 6 O 1.34590 * 133.42359 * 180.16560 * 5 4 3 7 7 C 1.34866 * 110.81767 * 180.29631 * 6 5 4 8 8 C 1.47168 * 125.13036 * 179.97438 * 7 6 5 9 9 O 1.21625 * 119.99840 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99997 * 0.02614 * 8 7 6 11 11 C 1.46497 * 120.00215 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47589 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.73491 * 303.76521 * 12 11 10 14 14 C 1.53489 * 113.46856 * 172.93995 * 12 11 10 15 15 C 1.53497 * 83.34733 * 219.15353 * 14 12 11 16 16 N 1.47066 * 113.46662 * 74.50245 * 12 11 10 17 17 C 1.36938 * 136.05877 * 321.87476 * 16 12 11 18 18 H 1.08002 * 120.00092 * 356.14701 * 17 16 12 19 19 C 1.38817 * 119.99842 * 176.15416 * 17 16 12 20 20 N 1.31617 * 120.00407 * 6.72057 * 19 17 16 21 21 Si 1.86796 * 119.99651 * 186.72165 * 19 17 16 22 22 H 1.48499 * 109.47601 * 94.98001 * 21 19 17 23 23 H 1.48505 * 109.47082 * 214.98022 * 21 19 17 24 24 H 1.48500 * 109.47621 * 334.97752 * 21 19 17 25 25 C 1.35751 * 109.73650 * 359.97438 * 7 6 5 26 26 C 1.40664 * 118.77741 * 0.48264 * 5 4 3 27 27 N 1.31432 * 119.40929 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46711 * 90.00506 * 1 2 3 29 29 H 1.09004 * 109.46941 * 210.00144 * 1 2 3 30 30 H 1.08995 * 109.47188 * 329.99890 * 1 2 3 31 31 H 1.07998 * 120.13929 * 359.95313 * 3 2 1 32 32 H 1.08001 * 120.83361 * 179.74066 * 4 3 2 33 33 H 0.97007 * 119.99999 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47175 * 300.00318 * 11 10 8 35 35 H 1.08999 * 109.46968 * 59.99286 * 11 10 8 36 36 H 1.09006 * 114.20987 * 332.73872 * 14 12 11 37 37 H 1.09001 * 114.20784 * 105.56899 * 14 12 11 38 38 H 1.08999 * 113.46772 * 271.29134 * 15 14 12 39 39 H 1.08995 * 113.47385 * 140.84917 * 15 14 12 40 40 H 0.96989 * 120.00361 * 180.02562 * 20 19 17 41 41 H 1.08001 * 126.92927 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2098 0.0000 4 6 3.5709 1.2171 -0.0048 5 6 4.2386 -0.0055 0.0009 6 8 5.5399 -0.3489 0.0015 7 6 5.6817 -1.6901 0.0018 8 6 6.9676 -2.4057 0.0019 9 8 6.9868 -3.6218 0.0017 10 7 8.1240 -1.7136 0.0022 11 6 9.4041 -2.4259 0.0029 12 6 10.5513 -1.4135 0.0025 13 1 10.4976 -0.7164 -0.8336 14 6 11.9341 -2.0565 0.1762 15 6 12.1993 -0.8248 1.0530 16 7 10.7516 -0.7550 1.3021 17 6 9.9451 -0.2836 2.3034 18 1 8.8714 -0.3104 2.1897 19 6 10.5075 0.2289 3.4644 20 7 11.8116 0.3846 3.5509 21 14 9.4135 0.6973 4.9042 22 1 9.3419 -0.4361 5.8610 23 1 9.9789 1.8878 5.5887 24 1 8.0500 1.0129 4.4078 25 6 4.4592 -2.2803 0.0019 26 6 3.4811 -1.1907 0.0009 27 7 2.1524 -1.1450 0.0005 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6415 2.1407 -0.0008 32 1 4.1195 2.1474 -0.0091 33 1 8.1087 -0.7436 0.0020 34 1 9.4714 -3.0515 0.8930 35 1 9.4721 -3.0518 -0.8869 36 1 11.9230 -2.9998 0.7224 37 1 12.5286 -2.0916 -0.7367 38 1 12.5857 0.0291 0.4965 39 1 12.7834 -1.0455 1.9464 40 1 12.2046 0.7423 4.3622 41 1 4.2502 -3.3399 0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038948421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:49 Heat of formation + Delta-G solvation = 64.147303 kcal Electronic energy + Delta-G solvation = -25363.694167 eV Core-core repulsion = 21633.327218 eV Total energy + Delta-G solvation = -3730.366949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83561 -39.73162 -39.09469 -38.12165 -34.37281 -33.43452 -32.68924 -32.26721 -31.01208 -28.71212 -28.01367 -27.26561 -24.45605 -23.52563 -22.65858 -22.37918 -21.58237 -20.74095 -19.42581 -18.54346 -17.77133 -16.75925 -16.69083 -16.10317 -15.87732 -15.63759 -15.32136 -14.67278 -14.41888 -14.31243 -14.00279 -13.81511 -13.36280 -13.30820 -13.21879 -13.01209 -12.74539 -12.51614 -12.47907 -12.01278 -11.57013 -11.22323 -11.07271 -10.81251 -10.77986 -10.64692 -10.34213 -9.93726 -9.87574 -9.72751 -9.37737 -9.10325 -8.94042 -8.81006 -8.66085 -6.96752 -5.82957 -3.14907 0.27444 0.84877 1.61403 2.22008 3.07886 3.17521 3.35247 3.40948 3.42164 3.43354 3.81369 4.19915 4.33747 4.38896 4.54269 4.73060 4.93279 5.02397 5.13920 5.21153 5.27690 5.32170 5.38358 5.50064 5.53082 5.60602 5.64016 5.69262 5.83478 5.95073 5.98557 6.09421 6.23618 6.32333 6.50769 6.56183 6.64789 6.73644 7.16678 7.34209 7.52074 7.60411 7.62587 7.91968 8.16763 8.97250 9.64891 10.56727 11.34393 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003562 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.664079 B = 7859.164587 C = 9149.728889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.144 4.144 4 C -0.054 4.054 5 C 0.011 3.989 6 O -0.173 6.173 7 C 0.008 3.992 8 C 0.593 3.407 9 O -0.519 6.519 10 N -0.694 5.694 11 C 0.118 3.882 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.159 4.159 15 C 0.150 3.850 16 N -0.602 5.602 17 C -0.217 4.217 18 H 0.079 0.921 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 C -0.115 4.115 26 C 0.071 3.929 27 N -0.442 5.442 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 0.868 -10.125 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.164 4.164 4 C -0.081 4.081 5 C -0.039 4.039 6 O -0.073 6.073 7 C -0.044 4.044 8 C 0.376 3.624 9 O -0.398 6.398 10 N -0.342 5.342 11 C -0.005 4.005 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.198 4.198 15 C 0.025 3.975 16 N -0.328 5.328 17 C -0.344 4.344 18 H 0.097 0.903 19 C -0.201 4.201 20 N -0.562 5.562 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.136 4.136 26 C -0.059 4.059 27 N -0.152 5.152 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.415 -0.455 -9.779 19.113 hybrid contribution -0.130 1.705 0.861 1.914 sum -16.545 1.250 -8.918 18.837 Atomic orbital electron populations 1.20701 0.88025 1.03761 1.03290 1.21330 0.97215 0.87470 0.96034 1.21856 0.93054 0.99820 1.01671 1.20526 0.93492 0.95049 0.99003 1.20565 0.82514 0.96878 1.03957 1.84065 1.24758 1.22803 1.75657 1.22345 0.96399 0.80124 1.05573 1.16640 0.81297 0.86254 0.78181 1.90867 1.85939 1.11668 1.51294 1.45943 1.05522 1.11291 1.71473 1.22003 0.80957 0.95641 1.01944 1.22438 0.92316 0.92495 0.90911 0.93290 1.23648 0.96099 1.00089 1.00004 1.22058 0.87593 0.91578 0.96303 1.45743 1.02888 1.69435 1.14695 1.18844 0.88673 1.34538 0.92391 0.90280 1.24763 0.95906 1.01361 0.98039 1.69831 1.08976 1.50107 1.27331 0.86188 0.79384 0.77763 0.82959 1.21461 1.21649 1.20685 1.22440 0.88125 0.99851 1.03229 1.20590 0.90277 0.92157 1.02850 1.66839 1.07117 1.29610 1.11684 0.90211 0.90270 0.90380 0.83197 0.83296 0.75402 0.90373 0.91545 0.90068 0.92189 0.95693 0.90942 0.93616 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.16 36.01 0.37 -0.30 16 2 C 0.13 1.31 6.78 -82.53 -0.56 0.75 16 3 C -0.14 -1.28 9.71 -39.36 -0.38 -1.66 16 4 C -0.05 -0.58 10.19 -39.20 -0.40 -0.98 16 5 C 0.01 0.16 7.42 -38.27 -0.28 -0.12 16 6 O -0.17 -2.67 10.28 3.36 0.03 -2.63 16 7 C 0.01 0.12 7.07 -36.85 -0.26 -0.14 16 8 C 0.59 10.25 7.80 -12.64 -0.10 10.15 16 9 O -0.52 -10.02 16.83 5.26 0.09 -9.93 16 10 N -0.69 -11.89 5.36 -61.47 -0.33 -12.21 16 11 C 0.12 2.06 5.52 -4.04 -0.02 2.04 16 12 C 0.13 2.35 4.10 -72.40 -0.30 2.06 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.16 -2.80 8.03 -26.22 -0.21 -3.01 16 15 C 0.15 3.36 7.42 -8.50 -0.06 3.30 16 16 N -0.60 -14.42 3.65 -177.00 -0.65 -15.06 16 17 C -0.22 -5.79 10.54 -15.06 -0.16 -5.95 16 18 H 0.08 2.04 7.49 -52.49 -0.39 1.65 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -26.67 11.53 55.49 0.64 -26.03 16 21 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.12 -1.70 10.81 -37.18 -0.40 -2.10 16 26 C 0.07 1.04 7.52 -83.18 -0.63 0.42 16 27 N -0.44 -6.04 10.32 -6.13 -0.06 -6.10 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.41 6.95 8.03 -40.82 -0.33 6.63 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.82 7.11 -51.93 -0.37 1.45 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.18 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -32.74 355.72 -8.73 -41.46 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.29 Total: 3.83 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.49 Total: 4.26 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.40 Total: -59.41 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.12 Total: -12.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.74 -8.73 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.611 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds