Wall clock time and date at job start Fri Apr 10 2020 23:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46869 * 269.99946 * 3 2 1 5 5 H 1.48497 * 109.47084 * 29.99648 * 3 2 1 6 6 H 1.48497 * 109.46908 * 149.99681 * 3 2 1 7 7 C 1.38812 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99773 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00356 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.85181 * 23.80219 * 10 9 7 12 12 C 1.53782 * 113.61908 * 154.99835 * 10 9 7 13 13 C 1.53777 * 87.08159 * 140.06564 * 12 10 9 14 14 H 1.09005 * 113.61616 * 89.20591 * 13 12 10 15 15 C 1.53007 * 113.61431 * 220.02070 * 13 12 10 16 16 N 1.46495 * 109.47264 * 183.47243 * 15 13 12 17 17 C 1.34771 * 120.00159 * 180.02562 * 16 15 13 18 18 O 1.21633 * 120.00210 * 0.02562 * 17 16 15 19 19 C 1.47175 * 120.00231 * 180.02562 * 17 16 15 20 20 C 1.35752 * 125.13162 * 180.02562 * 19 17 16 21 21 C 1.46417 * 106.13709 * 179.97438 * 20 19 17 22 22 N 1.32944 * 133.87992 * 179.97438 * 21 20 19 23 23 C 1.31443 * 121.37994 * 179.97438 * 22 21 20 24 24 C 1.38856 * 121.18280 * 0.04301 * 23 22 21 25 25 C 1.38219 * 119.71361 * 359.93763 * 24 23 22 26 26 C 1.39294 * 118.33450 * 0.04137 * 25 24 23 27 27 O 1.34581 * 133.43035 * 179.97438 * 26 25 24 28 28 C 1.53780 * 87.17332 * 334.61099 * 13 12 10 29 29 H 0.97004 * 120.00127 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99291 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.61175 * 25.51511 * 12 10 9 32 32 H 1.08999 * 113.69512 * 254.62955 * 12 10 9 33 33 H 1.09004 * 109.46993 * 63.47369 * 15 13 12 34 34 H 1.09003 * 109.47111 * 303.47570 * 15 13 12 35 35 H 0.97002 * 120.00187 * 359.97438 * 16 15 13 36 36 H 1.08005 * 126.92735 * 0.02562 * 20 19 17 37 37 H 1.07996 * 119.40560 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.14447 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.83094 * 180.02562 * 25 24 23 40 40 H 1.09001 * 113.61072 * 139.94149 * 28 13 12 41 41 H 1.09001 * 113.61813 * 270.84136 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0652 -3.5637 0.4078 12 6 1.2596 -4.8286 0.5971 13 6 1.8500 -5.6983 -0.5253 14 1 2.7997 -6.1646 -0.2627 15 6 0.8486 -6.6873 -1.1255 16 7 1.5239 -7.5217 -2.1223 17 6 0.8340 -8.4703 -2.7860 18 8 -0.3496 -8.6333 -2.5577 19 6 1.5126 -9.3090 -3.7870 20 6 0.9208 -10.2909 -4.5141 21 6 1.9676 -10.8491 -5.3722 22 7 1.9934 -11.8165 -6.2837 23 6 3.0987 -12.1225 -6.9259 24 6 4.2858 -11.4466 -6.6764 25 6 4.3123 -10.4320 -5.7382 26 6 3.1318 -10.1207 -5.0675 27 8 2.8157 -9.2169 -4.1217 28 6 2.0039 -4.4050 -1.3427 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.1793 -4.7007 0.5280 32 1 1.5882 -5.1205 1.5945 33 1 0.0364 -6.1379 -1.6016 34 1 0.4448 -7.3202 -0.3352 35 1 2.4676 -7.3911 -2.3052 36 1 -0.1138 -10.5977 -4.4692 37 1 3.0836 -12.9146 -7.6599 38 1 5.1843 -11.7122 -7.2136 39 1 5.2254 -9.8941 -5.5302 40 1 2.9338 -4.3546 -1.9092 41 1 1.1276 -4.1610 -1.9432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086150614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:08 Heat of formation + Delta-G solvation = 38.618478 kcal Electronic energy + Delta-G solvation = -24280.385708 eV Core-core repulsion = 20548.911746 eV Total energy + Delta-G solvation = -3731.473962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.13452 -40.03017 -39.22808 -38.47313 -34.96526 -33.67589 -33.35980 -31.98340 -30.80815 -30.16110 -27.74669 -25.18909 -25.07225 -23.95442 -23.69260 -22.24982 -21.14969 -21.10082 -19.36767 -18.63730 -18.15760 -17.07977 -17.02212 -16.95978 -16.21028 -16.05773 -15.43275 -14.97862 -14.70315 -14.42705 -14.11756 -13.84331 -13.61197 -13.55668 -13.49330 -13.36321 -13.11759 -12.95260 -11.98206 -11.87742 -11.47131 -11.28578 -11.06472 -10.87842 -10.75962 -10.50133 -10.20709 -10.09706 -9.97798 -9.88087 -9.56501 -9.51976 -9.34392 -9.05052 -8.89416 -6.99037 -5.80517 -3.09572 -0.01580 0.61497 1.31333 1.88547 2.73204 2.79255 3.23487 3.41146 3.46229 3.48107 3.59636 3.91476 4.21514 4.34061 4.45643 4.55979 4.67349 4.83687 4.89404 4.92689 5.09301 5.16311 5.27311 5.42575 5.42701 5.44491 5.64344 5.71723 5.73597 5.80217 5.87197 6.04935 6.06300 6.24048 6.29763 6.33477 6.37580 6.55072 6.77320 7.06748 7.16892 7.34030 7.66838 7.75681 8.37973 9.49035 10.07045 10.41086 11.41751 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002068 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.745834 B =13538.197379 C =14165.246616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.141 4.141 13 C -0.128 4.128 14 H 0.090 0.910 15 C 0.129 3.871 16 N -0.707 5.707 17 C 0.595 3.405 18 O -0.510 6.510 19 C -0.001 4.001 20 C -0.106 4.106 21 C 0.063 3.937 22 N -0.440 5.440 23 C 0.102 3.898 24 C -0.143 4.143 25 C -0.059 4.059 26 C 0.017 3.983 27 O -0.177 6.177 28 C -0.163 4.163 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.408 0.592 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.054 0.946 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.347 -25.390 -11.134 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.181 4.181 13 C -0.148 4.148 14 H 0.108 0.892 15 C 0.007 3.993 16 N -0.356 5.356 17 C 0.379 3.621 18 O -0.387 6.387 19 C -0.053 4.053 20 C -0.127 4.127 21 C -0.066 4.066 22 N -0.149 5.149 23 C -0.064 4.064 24 C -0.163 4.163 25 C -0.086 4.086 26 C -0.034 4.034 27 O -0.077 6.077 28 C -0.204 4.204 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.243 0.757 36 H 0.197 0.803 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.073 0.927 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.969 -25.495 -10.910 28.854 hybrid contribution 1.363 1.303 -0.133 1.890 sum 9.333 -24.192 -11.043 28.184 Atomic orbital electron populations 1.69662 1.05131 1.25778 1.57373 1.24782 0.95542 0.97826 1.02806 0.86182 0.78647 0.83783 0.77521 1.21701 1.21748 1.20738 1.19297 0.91063 0.84234 1.43012 0.91096 1.42407 1.05777 0.99874 1.86947 1.21535 0.95334 0.85048 0.92673 0.90653 1.23446 1.01107 0.96881 0.96662 1.22661 0.98393 0.94337 0.99386 0.89208 1.21620 0.95645 0.92009 0.90049 1.45986 1.14219 1.34937 1.40503 1.16630 0.85823 0.79887 0.79759 1.90918 1.13713 1.69121 1.64928 1.22225 0.81578 1.00575 1.00951 1.22526 1.00235 0.95301 0.94680 1.20658 0.92615 0.95669 0.97668 1.67054 1.29680 1.13094 1.05037 1.22887 0.87188 0.98764 0.97576 1.22103 1.00526 0.95765 0.97896 1.20544 0.95358 0.97827 0.94848 1.20573 0.97325 0.92416 0.93043 1.84010 1.25890 1.49892 1.47918 1.24000 1.01455 0.94876 1.00046 0.93428 0.78042 0.89999 0.91868 0.90507 0.91033 0.75741 0.80339 0.81476 0.82986 0.83352 0.92693 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.71 -17.49 5.41 -52.56 -0.28 -17.77 16 10 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.14 -2.14 7.40 -25.92 -0.19 -2.34 16 13 C -0.13 -1.62 3.75 -89.81 -0.34 -1.96 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.58 5.50 -4.04 -0.02 1.56 16 16 N -0.71 -7.88 5.55 -61.46 -0.34 -8.22 16 17 C 0.60 7.52 7.80 -12.63 -0.10 7.42 16 18 O -0.51 -7.94 16.83 5.25 0.09 -7.85 16 19 C 0.00 -0.01 7.07 -36.85 -0.26 -0.28 16 20 C -0.11 -1.19 10.81 -37.18 -0.40 -1.59 16 21 C 0.06 0.71 7.52 -83.18 -0.63 0.08 16 22 N -0.44 -4.58 10.41 -9.87 -0.10 -4.68 16 23 C 0.10 0.68 11.17 -17.49 -0.20 0.48 16 24 C -0.14 -0.72 10.09 -39.36 -0.40 -1.12 16 25 C -0.06 -0.40 10.19 -39.20 -0.40 -0.80 16 26 C 0.02 0.17 7.42 -38.27 -0.28 -0.12 16 27 O -0.18 -1.86 10.28 3.41 0.03 -1.83 16 28 C -0.16 -2.59 7.45 -25.83 -0.19 -2.78 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 31 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.41 3.78 8.19 -40.82 -0.33 3.45 16 36 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.15 0.23 8.06 -52.48 -0.42 -0.20 16 39 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -33.33 357.53 -8.71 -42.04 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.25 Total: 8.95 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.95 Total: -5.93 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.00 Total: -57.92 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.12 Total: -9.68 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.33 -8.71 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.658 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds