Wall clock time and date at job start Fri Apr 10 2020 23:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47400 * 2 1 4 4 N 1.46508 * 109.46668 * 119.99738 * 2 1 3 5 5 C 1.35819 * 126.05497 * 275.28435 * 4 2 1 6 6 C 1.35771 * 107.55975 * 180.10471 * 5 4 2 7 7 N 1.40715 * 126.07931 * 179.89965 * 6 5 4 8 8 C 1.34776 * 119.99473 * 179.71636 * 7 6 5 9 9 O 1.21618 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.47520 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.20213 * 359.97438 * 10 8 7 12 12 C 1.37824 * 119.92228 * 180.30454 * 11 10 8 13 13 C 1.38569 * 120.32441 * 359.42132 * 12 11 10 14 14 C 1.38034 * 120.39856 * 0.60943 * 13 12 11 15 15 C 1.38827 * 120.07206 * 359.66928 * 14 13 12 16 16 O 1.35525 * 120.16056 * 180.02562 * 15 14 13 17 17 C 1.34815 * 117.00022 * 354.40974 * 16 15 14 18 18 H 1.08003 * 119.99764 * 5.05792 * 17 16 15 19 19 C 1.38697 * 120.00175 * 185.06289 * 17 16 15 20 20 N 1.31517 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47334 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47191 * 120.00125 * 21 19 17 24 24 H 1.48501 * 109.47306 * 240.00014 * 21 19 17 25 25 C 1.40261 * 107.83268 * 359.63274 * 6 5 4 26 26 N 1.30822 * 108.33884 * 0.23185 * 25 6 5 27 27 H 1.09008 * 109.47121 * 300.00353 * 1 2 3 28 28 H 1.08998 * 109.47030 * 59.99768 * 1 2 3 29 29 H 1.08995 * 109.47863 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46892 * 239.99499 * 2 1 3 31 31 H 1.09001 * 109.47145 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46826 * 299.99834 * 3 2 1 33 33 H 1.08998 * 109.46793 * 59.99991 * 3 2 1 34 34 H 1.08008 * 126.22113 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00207 * 359.70811 * 7 6 5 36 36 H 1.08001 * 120.03351 * 0.03234 * 11 10 8 37 37 H 1.08003 * 119.83610 * 179.70348 * 12 11 10 38 38 H 1.07997 * 119.80571 * 180.30521 * 13 12 11 39 39 H 1.07999 * 119.95958 * 179.70174 * 14 13 12 40 40 H 0.97003 * 119.99713 * 179.97438 * 20 19 17 41 41 H 1.08005 * 125.82914 * 180.22641 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1893 -0.1374 2.4249 6 6 2.6580 -1.1085 3.2498 7 7 2.9720 -0.9575 4.6131 8 6 3.4257 -2.0109 5.3208 9 8 3.5633 -3.0922 4.7812 10 6 3.7543 -1.8528 6.7502 11 6 3.5973 -0.6132 7.3742 12 6 3.9120 -0.4703 8.7084 13 6 4.3727 -1.5542 9.4385 14 6 4.5335 -2.7853 8.8351 15 6 4.2269 -2.9464 7.4907 16 8 4.3836 -4.1543 6.8966 17 6 4.9499 -5.1304 7.6343 18 1 5.1807 -4.9559 8.6748 19 6 5.2361 -6.3586 7.0570 20 7 4.9556 -6.5708 5.7897 21 14 6.0214 -7.7107 8.0789 22 1 6.2363 -7.2224 9.4648 23 1 5.1264 -8.8953 8.1041 24 1 7.3266 -8.0892 7.4801 25 6 2.7678 -2.2906 2.5028 26 7 2.3856 -2.0398 1.2770 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9907 0.8892 2.6958 35 1 2.8619 -0.0952 5.0435 36 1 3.2339 0.2335 6.8107 37 1 3.7946 0.4900 9.1884 38 1 4.6122 -1.4341 10.4847 39 1 4.8976 -3.6241 9.4097 40 1 5.1561 -7.4297 5.3859 41 1 3.1095 -3.2448 2.8758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727317721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:20 Heat of formation + Delta-G solvation = 52.095915 kcal Electronic energy + Delta-G solvation = -25445.597802 eV Core-core repulsion = 21714.708265 eV Total energy + Delta-G solvation = -3730.889537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08267 -39.53483 -38.07044 -36.37775 -35.76134 -33.88459 -32.35088 -30.73559 -29.97781 -28.96502 -28.31486 -27.54160 -25.40219 -23.60453 -22.68789 -21.71793 -20.93971 -20.14974 -19.41225 -18.09929 -17.50930 -17.09859 -16.12015 -15.48141 -15.26699 -14.68982 -14.67910 -14.38260 -14.31273 -14.13785 -13.86691 -13.74307 -13.41378 -12.94936 -12.79471 -12.74989 -12.54092 -12.41618 -12.28831 -11.72785 -11.66399 -11.42302 -11.36155 -11.12982 -10.93143 -10.80925 -10.48728 -10.44291 -10.22806 -9.56885 -9.11181 -8.89182 -8.85381 -8.32832 -7.42147 -7.23560 -6.45449 -4.05019 1.62723 2.07976 2.29910 2.54787 3.10600 3.12133 3.13162 3.18823 3.68978 3.85198 3.93094 4.36949 4.63022 4.64996 4.81272 4.87106 5.04696 5.15302 5.17157 5.23592 5.33424 5.38322 5.40985 5.49556 5.57075 5.68680 5.74200 5.87601 5.89670 5.97716 6.08750 6.13265 6.53090 6.64133 6.67947 6.89840 7.03518 7.18388 7.22023 7.27874 7.36345 7.66797 7.88443 7.94663 8.12439 8.94009 9.02320 9.65368 10.68186 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003481 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.480319 B = 8041.422618 C = 9725.502763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 C -0.163 4.163 4 N -0.374 5.374 5 C -0.003 4.003 6 C 0.025 3.975 7 N -0.657 5.657 8 C 0.556 3.444 9 O -0.489 6.489 10 C -0.226 4.226 11 C -0.038 4.038 12 C -0.230 4.230 13 C -0.050 4.050 14 C -0.237 4.237 15 C 0.191 3.809 16 O -0.122 6.122 17 C -0.403 4.403 18 H 0.095 0.905 19 C 0.045 3.955 20 N -0.830 5.830 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.054 3.946 26 N -0.290 5.290 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.401 0.599 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.272 0.728 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 16.212 -5.087 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 C -0.221 4.221 4 N -0.161 5.161 5 C -0.150 4.150 6 C -0.080 4.080 7 N -0.305 5.305 8 C 0.347 3.653 9 O -0.362 6.362 10 C -0.231 4.231 11 C -0.057 4.057 12 C -0.249 4.249 13 C -0.068 4.068 14 C -0.256 4.256 15 C 0.131 3.869 16 O -0.020 6.020 17 C -0.479 4.479 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.461 5.461 21 Si 0.765 3.235 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.134 4.134 26 N -0.111 5.111 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.186 0.814 35 H 0.236 0.764 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.993 14.640 -7.135 17.354 hybrid contribution 0.425 0.319 1.759 1.837 sum -5.568 14.959 -5.376 16.843 Atomic orbital electron populations 1.22252 0.94058 1.03311 1.02700 1.21108 0.94460 0.92518 0.85830 1.22181 1.02375 0.94279 1.03288 1.48463 1.52624 1.07509 1.07540 1.21612 1.08297 0.98912 0.86168 1.17806 1.09579 0.94629 0.86009 1.42899 1.67163 1.13671 1.06723 1.18266 0.77254 0.83293 0.86507 1.90821 1.50058 1.25110 1.70196 1.18681 1.18078 0.93756 0.92616 1.20750 0.95862 0.94364 0.94701 1.20452 1.11110 0.98683 0.94700 1.20909 0.94978 0.92448 0.98505 1.21164 1.10513 0.98829 0.95070 1.19231 0.91057 0.86093 0.90567 1.84163 1.64604 1.14310 1.38916 1.21546 1.40297 0.91255 0.94808 0.88785 1.25385 0.96839 0.97852 0.96225 1.70127 1.41191 1.23938 1.10798 0.85661 0.78776 0.79850 0.79209 1.18982 1.20003 1.19999 1.24722 0.99220 1.00385 0.89032 1.77362 1.20369 0.92907 1.20499 0.91971 0.90818 0.91592 0.88227 0.91483 0.90306 0.91612 0.81422 0.76374 0.87059 0.87222 0.87142 0.85002 0.91830 0.77338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.52 37.16 0.35 -0.98 16 2 C 0.16 1.55 3.93 -67.93 -0.27 1.28 16 3 C -0.16 -1.09 8.84 37.16 0.33 -0.76 16 4 N -0.37 -5.19 3.55 -54.52 -0.19 -5.38 16 5 C 0.00 -0.04 10.66 -16.67 -0.18 -0.22 16 6 C 0.02 0.42 6.90 -83.90 -0.58 -0.16 16 7 N -0.66 -11.05 5.42 -10.98 -0.06 -11.11 16 8 C 0.56 12.11 7.74 -12.48 -0.10 12.01 16 9 O -0.49 -12.93 12.32 -16.59 -0.20 -13.14 16 10 C -0.23 -4.80 5.89 -104.81 -0.62 -5.42 16 11 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 12 C -0.23 -3.65 10.02 -39.61 -0.40 -4.05 16 13 C -0.05 -0.86 10.03 -39.53 -0.40 -1.25 16 14 C -0.24 -4.98 9.16 -39.44 -0.36 -5.34 16 15 C 0.19 4.64 6.66 -38.60 -0.26 4.38 16 16 O -0.12 -3.54 7.84 -21.07 -0.17 -3.70 16 17 C -0.40 -11.26 9.49 30.90 0.29 -10.96 16 18 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.83 -24.74 13.67 55.48 0.76 -23.98 16 21 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.05 1.06 10.83 -17.22 -0.19 0.87 16 26 N -0.29 -5.22 12.56 30.71 0.39 -4.84 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.40 7.17 -51.93 -0.37 0.02 16 34 H 0.17 1.54 7.29 -52.48 -0.38 1.16 16 35 H 0.40 5.12 6.86 -40.82 -0.28 4.84 16 36 H 0.11 1.38 6.40 -52.49 -0.34 1.04 16 37 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.21 4.73 5.91 -52.48 -0.31 4.42 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -35.05 348.68 -6.84 -41.89 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.77 Total: 10.07 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.83 Total: -10.46 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.89 Total: -45.31 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.37 Total: -16.84 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.05 -6.84 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727317721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.987 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds