Wall clock time and date at job start Fri Apr 10 2020 23:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47400 * 2 1 4 4 N 1.46508 * 109.46668 * 119.99738 * 2 1 3 5 5 C 1.35819 * 126.05497 * 275.28435 * 4 2 1 6 6 C 1.35771 * 107.55975 * 180.10471 * 5 4 2 7 7 N 1.40715 * 126.07931 * 179.89965 * 6 5 4 8 8 C 1.34776 * 119.99473 * 179.71636 * 7 6 5 9 9 O 1.21618 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.47520 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.39667 * 120.20213 * 359.97438 * 10 8 7 12 12 C 1.37824 * 119.92228 * 180.30454 * 11 10 8 13 13 C 1.38569 * 120.32441 * 359.42132 * 12 11 10 14 14 C 1.38034 * 120.39856 * 0.60943 * 13 12 11 15 15 C 1.38827 * 120.07206 * 359.66928 * 14 13 12 16 16 O 1.35525 * 120.16056 * 180.02562 * 15 14 13 17 17 C 1.34815 * 117.00022 * 354.40974 * 16 15 14 18 18 H 1.08003 * 119.99764 * 5.05792 * 17 16 15 19 19 C 1.38697 * 120.00175 * 185.06289 * 17 16 15 20 20 N 1.31517 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47334 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47191 * 120.00125 * 21 19 17 24 24 H 1.48501 * 109.47306 * 240.00014 * 21 19 17 25 25 C 1.40261 * 107.83268 * 359.63274 * 6 5 4 26 26 N 1.30822 * 108.33884 * 0.23185 * 25 6 5 27 27 H 1.09008 * 109.47121 * 300.00353 * 1 2 3 28 28 H 1.08998 * 109.47030 * 59.99768 * 1 2 3 29 29 H 1.08995 * 109.47863 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46892 * 239.99499 * 2 1 3 31 31 H 1.09001 * 109.47145 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46826 * 299.99834 * 3 2 1 33 33 H 1.08998 * 109.46793 * 59.99991 * 3 2 1 34 34 H 1.08008 * 126.22113 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00207 * 359.70811 * 7 6 5 36 36 H 1.08001 * 120.03351 * 0.03234 * 11 10 8 37 37 H 1.08003 * 119.83610 * 179.70348 * 12 11 10 38 38 H 1.07997 * 119.80571 * 180.30521 * 13 12 11 39 39 H 1.07999 * 119.95958 * 179.70174 * 14 13 12 40 40 H 0.97003 * 119.99713 * 179.97438 * 20 19 17 41 41 H 1.08005 * 125.82914 * 180.22641 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1893 -0.1374 2.4249 6 6 2.6580 -1.1085 3.2498 7 7 2.9720 -0.9575 4.6131 8 6 3.4257 -2.0109 5.3208 9 8 3.5633 -3.0922 4.7812 10 6 3.7543 -1.8528 6.7502 11 6 3.5973 -0.6132 7.3742 12 6 3.9120 -0.4703 8.7084 13 6 4.3727 -1.5542 9.4385 14 6 4.5335 -2.7853 8.8351 15 6 4.2269 -2.9464 7.4907 16 8 4.3836 -4.1543 6.8966 17 6 4.9499 -5.1304 7.6343 18 1 5.1807 -4.9559 8.6748 19 6 5.2361 -6.3586 7.0570 20 7 4.9556 -6.5708 5.7897 21 14 6.0214 -7.7107 8.0789 22 1 6.2363 -7.2224 9.4648 23 1 5.1264 -8.8953 8.1041 24 1 7.3266 -8.0892 7.4801 25 6 2.7678 -2.2906 2.5028 26 7 2.3856 -2.0398 1.2770 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9907 0.8892 2.6958 35 1 2.8619 -0.0952 5.0435 36 1 3.2339 0.2335 6.8107 37 1 3.7946 0.4900 9.1884 38 1 4.6122 -1.4341 10.4847 39 1 4.8976 -3.6241 9.4097 40 1 5.1561 -7.4297 5.3859 41 1 3.1095 -3.2448 2.8758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727317721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:20 Heat of formation + Delta-G solvation = 27.100934 kcal Electronic energy + Delta-G solvation = -25446.681666 eV Core-core repulsion = 21714.708265 eV Total energy + Delta-G solvation = -3731.973400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37720 -41.15258 -39.72644 -38.01649 -36.73848 -35.37519 -34.30723 -32.24692 -31.15424 -30.55574 -29.57871 -28.14964 -27.35295 -25.02620 -23.89440 -23.30961 -22.35280 -21.39096 -20.73587 -19.84975 -19.10983 -18.37148 -17.74037 -16.78169 -16.45033 -16.31899 -16.05706 -15.88359 -15.81917 -15.53974 -15.23661 -15.10876 -14.87719 -14.41402 -14.22869 -13.90746 -13.79801 -13.53742 -13.14517 -13.04340 -13.00833 -12.64813 -12.54540 -12.37368 -12.31288 -12.16690 -12.09056 -11.72283 -11.65409 -11.38142 -10.83177 -10.56266 -10.35105 -9.84921 -9.05156 -8.62131 -8.43241 -6.13836 0.10077 0.75168 0.85152 1.32765 1.43426 1.48457 1.52522 1.61984 2.16258 2.28738 2.32237 2.90575 3.25399 3.48256 3.60570 3.81933 3.96793 4.01563 4.10009 4.12644 4.15038 4.31242 4.52092 4.54524 4.55851 4.69715 4.70828 4.80679 4.86100 4.96144 4.99232 5.09640 5.15529 5.18190 5.23717 5.29478 5.50666 5.63108 5.72365 5.84740 5.97523 6.17135 6.19339 6.58684 6.77808 6.96286 7.48170 7.81923 8.77161 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003481 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.480319 B = 8041.422618 C = 9725.502763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 C -0.156 4.156 4 N -0.360 5.360 5 C 0.043 3.957 6 C -0.014 4.014 7 N -0.630 5.630 8 C 0.546 3.454 9 O -0.551 6.551 10 C -0.241 4.241 11 C -0.028 4.028 12 C -0.199 4.199 13 C -0.039 4.039 14 C -0.258 4.258 15 C 0.151 3.849 16 O -0.188 6.188 17 C -0.425 4.425 18 H 0.107 0.893 19 C -0.023 4.023 20 N -0.904 5.904 21 Si 1.021 2.979 22 H -0.244 1.244 23 H -0.270 1.270 24 H -0.270 1.270 25 C 0.019 3.981 26 N -0.320 5.320 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.424 0.576 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.270 0.730 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 22.390 -3.455 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 C -0.214 4.214 4 N -0.146 5.146 5 C -0.106 4.106 6 C -0.118 4.118 7 N -0.278 5.278 8 C 0.337 3.663 9 O -0.428 6.428 10 C -0.245 4.245 11 C -0.047 4.047 12 C -0.217 4.217 13 C -0.058 4.058 14 C -0.278 4.278 15 C 0.095 3.905 16 O -0.091 6.091 17 C -0.501 4.501 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.540 5.540 21 Si 0.840 3.160 22 H -0.167 1.167 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.167 4.167 26 N -0.143 5.143 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.243 0.757 35 H 0.264 0.736 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.143 20.937 -5.486 22.792 hybrid contribution 0.587 -1.008 1.205 1.677 sum -6.557 19.929 -4.281 21.413 Atomic orbital electron populations 1.22229 0.92483 1.02275 1.04723 1.21679 0.95677 0.94023 0.83891 1.22196 1.01787 0.91785 1.05619 1.49063 1.50146 1.06141 1.09232 1.22356 1.03753 0.99997 0.84518 1.17959 1.12688 0.94778 0.86414 1.42439 1.65565 1.13301 1.06535 1.18601 0.77073 0.83492 0.87183 1.90842 1.52704 1.27887 1.71379 1.19135 1.17830 0.95024 0.92551 1.21340 0.94185 0.93515 0.95638 1.21186 1.06397 1.00202 0.93952 1.21451 0.92823 0.90864 1.00615 1.21296 1.11760 1.00777 0.93919 1.20065 0.91859 0.86047 0.92490 1.84177 1.68226 1.16160 1.40506 1.22058 1.40628 0.91926 0.95496 0.87543 1.26737 0.97414 1.00561 0.97471 1.70330 1.45365 1.24735 1.13531 0.84516 0.77508 0.75950 0.78061 1.16742 1.19478 1.19528 1.24176 1.01493 1.00311 0.90705 1.77281 1.21595 0.95759 1.19713 0.91139 0.87583 0.94179 0.88665 0.92394 0.87445 0.89870 0.75650 0.73646 0.81786 0.81625 0.82889 0.85995 0.92133 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.52 71.98 0.69 -1.39 16 2 C 0.15 2.39 3.93 44.99 0.18 2.56 16 3 C -0.16 -1.34 8.84 71.98 0.64 -0.70 16 4 N -0.36 -9.46 3.55 -326.39 -1.16 -10.62 16 5 C 0.04 1.00 10.66 83.50 0.89 1.89 16 6 C -0.01 -0.48 6.90 37.63 0.26 -0.22 16 7 N -0.63 -20.74 5.42 -306.90 -1.66 -22.40 16 8 C 0.55 25.01 7.74 86.69 0.67 25.68 16 9 O -0.55 -32.51 12.32 16.81 0.21 -32.30 16 10 C -0.24 -10.30 5.89 -19.99 -0.12 -10.41 16 11 C -0.03 -0.82 9.53 22.52 0.21 -0.60 16 12 C -0.20 -5.04 10.02 22.25 0.22 -4.82 16 13 C -0.04 -1.19 10.03 22.30 0.22 -0.97 16 14 C -0.26 -10.93 9.16 22.36 0.20 -10.73 16 15 C 0.15 7.72 6.66 22.91 0.15 7.87 16 16 O -0.19 -12.00 7.84 0.78 0.01 -11.99 16 17 C -0.43 -25.85 9.49 67.93 0.64 -25.20 16 18 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 19 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 20 N -0.90 -59.86 13.67 21.62 0.30 -59.57 16 21 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 22 H -0.24 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.02 0.80 10.83 85.34 0.92 1.73 16 26 N -0.32 -12.18 12.56 -56.77 -0.71 -12.89 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.46 7.17 -2.39 -0.02 0.45 16 34 H 0.23 2.58 7.29 -2.91 -0.02 2.56 16 35 H 0.42 9.20 6.86 -92.71 -0.64 8.56 16 36 H 0.16 2.92 6.40 -2.91 -0.02 2.90 16 37 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 39 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 40 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 41 H 0.16 8.58 5.91 -2.91 -0.02 8.57 16 Total: -1.00 -94.69 348.68 5.70 -88.99 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.45 Total: 30.06 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 6.25 Total: -16.20 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.24 Total: -105.48 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: 0.21 Total: -44.30 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -94.69 5.70 -88.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727317721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.090 kcal (2) G-P(sol) polarization free energy of solvation -94.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds