Wall clock time and date at job start Fri Apr 10 2020 23:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 N 1.46496 * 109.47028 * 119.99854 * 2 1 3 5 5 N 1.28447 * 125.19250 * 294.24914 * 4 2 1 6 6 C 1.30862 * 110.93314 * 179.88073 * 5 4 2 7 7 C 1.39672 * 107.86524 * 0.37933 * 6 5 4 8 8 C 1.36609 * 125.18977 * 114.56025 * 4 2 1 9 9 C 1.47118 * 126.88622 * 359.97438 * 8 4 2 10 10 O 1.21637 * 120.00126 * 5.72169 * 9 8 4 11 11 N 1.34781 * 120.00381 * 185.72609 * 9 8 4 12 12 C 1.39829 * 120.00141 * 186.53875 * 11 9 8 13 13 C 1.38980 * 120.04002 * 337.34976 * 12 11 9 14 14 C 1.38157 * 120.06439 * 179.69770 * 13 12 11 15 15 C 1.38166 * 120.14021 * 0.59912 * 14 13 12 16 16 C 1.38911 * 120.07515 * 359.67655 * 15 14 13 17 17 O 1.35759 * 120.03455 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00172 * 189.77951 * 17 16 15 19 19 H 1.08003 * 119.99926 * 7.36746 * 18 17 16 20 20 C 1.38649 * 120.00070 * 187.36173 * 18 17 16 21 21 N 1.31559 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47167 * 90.00335 * 22 20 18 24 24 H 1.48503 * 109.46957 * 210.00238 * 22 20 18 25 25 H 1.48500 * 109.47329 * 329.99998 * 22 20 18 26 26 C 1.38732 * 120.03426 * 157.62699 * 12 11 9 27 27 H 1.09002 * 109.47101 * 60.00301 * 1 2 3 28 28 H 1.09000 * 109.47744 * 300.00079 * 1 2 3 29 29 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47378 * 240.00290 * 2 1 3 31 31 H 1.09008 * 109.47232 * 60.00233 * 3 2 1 32 32 H 1.08998 * 109.47614 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47147 * 300.00185 * 3 2 1 34 34 H 1.07992 * 126.06866 * 180.12210 * 6 5 4 35 35 H 1.07994 * 127.32709 * 179.75629 * 7 6 5 36 36 H 0.97000 * 119.99509 * 6.53701 * 11 9 8 37 37 H 1.07998 * 119.97107 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.92707 * 180.30018 * 14 13 12 39 39 H 1.07998 * 119.96777 * 179.69848 * 15 14 13 40 40 H 0.96995 * 119.99986 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.07458 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8586 -0.2825 2.4036 6 6 2.4039 -1.1141 3.2541 7 6 2.9790 -2.1573 2.5248 8 6 2.7182 -1.8637 1.1973 9 6 3.1154 -2.6562 0.0232 10 8 2.9106 -2.2284 -1.0969 11 7 3.7061 -3.8563 0.1885 12 6 4.2068 -4.5476 -0.9190 13 6 3.7138 -4.2762 -2.1897 14 6 4.2126 -4.9545 -3.2851 15 6 5.1937 -5.9131 -3.1197 16 6 5.6866 -6.1932 -1.8516 17 8 6.6503 -7.1356 -1.6900 18 6 6.9406 -7.5039 -0.4258 19 1 6.3363 -7.1439 0.3937 20 6 8.0147 -8.3449 -0.1780 21 7 8.7510 -8.7831 -1.1763 22 14 8.4163 -8.8556 1.5734 23 1 7.6825 -10.1031 1.9058 24 1 9.8771 -9.0927 1.6972 25 1 8.0088 -7.7772 2.5094 26 6 5.1923 -5.5094 -0.7498 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 2.4119 -1.0100 4.3290 35 1 3.5138 -3.0111 2.9136 36 1 3.7839 -4.2404 1.0758 37 1 2.9432 -3.5311 -2.3217 38 1 3.8313 -4.7384 -4.2722 39 1 5.5781 -6.4452 -3.9774 40 1 9.5027 -9.3711 -1.0028 41 1 5.5742 -5.7251 0.2370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764897167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:46 Heat of formation + Delta-G solvation = 49.823651 kcal Electronic energy + Delta-G solvation = -25390.496859 eV Core-core repulsion = 21659.508790 eV Total energy + Delta-G solvation = -3730.988069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76489 -40.18665 -38.61744 -36.51821 -35.94663 -34.40958 -32.28779 -31.30132 -30.54371 -29.30661 -28.47524 -27.62095 -25.37717 -24.20522 -23.07615 -22.00683 -21.91330 -20.52524 -19.75639 -18.32800 -17.92681 -17.10093 -16.32828 -16.18758 -15.62425 -15.08228 -15.03227 -14.84785 -14.77009 -14.25482 -14.06845 -13.98762 -13.59131 -13.29098 -13.26911 -13.01798 -12.55670 -12.46838 -12.40842 -11.85975 -11.70799 -11.69763 -11.60032 -11.27753 -11.02760 -10.89085 -10.81683 -10.47819 -10.02031 -9.64185 -9.39294 -9.37023 -9.22031 -8.83422 -7.76399 -7.19829 -6.47419 -4.07710 1.01077 2.03592 2.17119 2.36379 2.47771 3.06598 3.10252 3.10653 3.15490 3.18460 3.93698 4.22348 4.36841 4.57716 4.59045 4.68423 4.91985 4.92876 5.06752 5.21995 5.25196 5.27836 5.35328 5.39731 5.53826 5.53873 5.66240 5.80503 5.84325 5.98307 6.01603 6.15580 6.22780 6.31065 6.56251 6.58489 6.84949 6.93057 7.09079 7.28075 7.39082 7.58953 7.76417 7.89557 7.96186 8.06538 8.97858 9.68132 10.70577 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.003148 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.072958 B = 8891.886974 C =10209.512026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.157 4.157 4 N -0.247 5.247 5 N -0.274 5.274 6 C -0.006 4.006 7 C -0.188 4.188 8 C -0.038 4.038 9 C 0.590 3.410 10 O -0.520 6.520 11 N -0.644 5.644 12 C 0.177 3.823 13 C -0.223 4.223 14 C -0.064 4.064 15 C -0.200 4.200 16 C 0.169 3.831 17 O -0.176 6.176 18 C -0.392 4.392 19 H 0.089 0.911 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.257 4.257 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.411 0.589 37 H 0.146 0.854 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 14.956 6.075 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.036 5.036 5 N -0.106 5.106 6 C -0.182 4.182 7 C -0.217 4.217 8 C -0.167 4.167 9 C 0.377 3.623 10 O -0.397 6.397 11 N -0.286 5.286 12 C 0.083 3.917 13 C -0.244 4.244 14 C -0.083 4.083 15 C -0.220 4.220 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.279 4.279 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.203 0.797 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.164 0.836 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.043 16.097 4.924 21.922 hybrid contribution 0.859 -1.232 1.659 2.238 sum -13.184 14.865 6.583 20.931 Atomic orbital electron populations 1.22127 0.92885 1.03151 1.03500 1.22158 0.95954 0.94732 0.84701 1.22088 1.02043 0.93866 1.03524 1.46007 1.36874 1.15017 1.05686 1.73118 1.21830 1.25810 0.89875 1.23553 1.01493 0.93173 0.99952 1.22322 1.06025 1.02635 0.90730 1.21338 1.06563 0.93223 0.95552 1.16921 0.77837 0.80678 0.86853 1.90612 1.54457 1.70231 1.24442 1.43038 1.56697 1.18121 1.10731 1.17485 0.94434 0.93555 0.86203 1.21296 1.06145 1.06205 0.90724 1.20618 0.95373 0.94496 0.97803 1.20316 1.02424 1.03753 0.95473 1.19070 0.88953 0.87882 0.92599 1.84042 1.46764 1.46964 1.30205 1.21248 1.14101 1.29464 0.81992 0.89321 1.25287 0.94935 0.96493 0.99764 1.70033 1.17271 1.31287 1.31058 0.85733 0.78188 0.79204 0.80408 1.19868 1.20263 1.19245 1.20740 1.03007 1.03625 1.00521 0.90142 0.91316 0.91950 0.84474 0.91113 0.91910 0.90225 0.79707 0.82103 0.75318 0.83627 0.86574 0.86401 0.91986 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.46 37.16 0.35 -1.02 16 2 C 0.12 1.31 3.56 -67.93 -0.24 1.07 16 3 C -0.16 -1.38 9.29 37.16 0.35 -1.04 16 4 N -0.25 -3.03 3.09 -50.70 -0.16 -3.19 16 5 N -0.27 -3.27 11.51 30.59 0.35 -2.92 16 6 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 7 C -0.19 -2.00 10.50 -38.97 -0.41 -2.41 16 8 C -0.04 -0.49 6.96 -82.06 -0.57 -1.06 16 9 C 0.59 8.74 7.70 -12.66 -0.10 8.64 16 10 O -0.52 -8.62 11.14 5.24 0.06 -8.56 16 11 N -0.64 -9.57 5.35 -10.94 -0.06 -9.63 16 12 C 0.18 3.28 6.49 -83.75 -0.54 2.73 16 13 C -0.22 -4.16 8.87 -39.34 -0.35 -4.51 16 14 C -0.06 -1.18 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.20 9.99 -39.36 -0.39 -4.60 16 16 C 0.17 4.01 6.63 -39.13 -0.26 3.75 16 17 O -0.18 -4.93 9.76 0.02 0.00 -4.93 16 18 C -0.39 -10.65 9.37 30.88 0.29 -10.36 16 19 H 0.09 2.20 5.46 -52.48 -0.29 1.91 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 22 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.26 -5.40 8.98 -39.20 -0.35 -5.75 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.64 5.33 -51.93 -0.28 1.36 16 31 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.16 1.29 7.64 -52.49 -0.40 0.89 16 36 H 0.41 4.91 7.87 -40.82 -0.32 4.59 16 37 H 0.15 2.64 5.22 -52.61 -0.27 2.37 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.13 2.66 5.84 -52.49 -0.31 2.35 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -32.37 349.37 -6.54 -38.91 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.80 Total: 9.69 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.93 Total: -15.43 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.90 Total: -39.90 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.37 -6.54 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764897167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.731 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds