Wall clock time and date at job start Fri Apr 10 2020 23:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 N 1.46496 * 109.47028 * 119.99854 * 2 1 3 5 5 N 1.28447 * 125.19250 * 294.24914 * 4 2 1 6 6 C 1.30862 * 110.93314 * 179.88073 * 5 4 2 7 7 C 1.39672 * 107.86524 * 0.37933 * 6 5 4 8 8 C 1.36609 * 125.18977 * 114.56025 * 4 2 1 9 9 C 1.47118 * 126.88622 * 359.97438 * 8 4 2 10 10 O 1.21637 * 120.00126 * 5.72169 * 9 8 4 11 11 N 1.34781 * 120.00381 * 185.72609 * 9 8 4 12 12 C 1.39829 * 120.00141 * 186.53875 * 11 9 8 13 13 C 1.38980 * 120.04002 * 337.34976 * 12 11 9 14 14 C 1.38157 * 120.06439 * 179.69770 * 13 12 11 15 15 C 1.38166 * 120.14021 * 0.59912 * 14 13 12 16 16 C 1.38911 * 120.07515 * 359.67655 * 15 14 13 17 17 O 1.35759 * 120.03455 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00172 * 189.77951 * 17 16 15 19 19 H 1.08003 * 119.99926 * 7.36746 * 18 17 16 20 20 C 1.38649 * 120.00070 * 187.36173 * 18 17 16 21 21 N 1.31559 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47167 * 90.00335 * 22 20 18 24 24 H 1.48503 * 109.46957 * 210.00238 * 22 20 18 25 25 H 1.48500 * 109.47329 * 329.99998 * 22 20 18 26 26 C 1.38732 * 120.03426 * 157.62699 * 12 11 9 27 27 H 1.09002 * 109.47101 * 60.00301 * 1 2 3 28 28 H 1.09000 * 109.47744 * 300.00079 * 1 2 3 29 29 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47378 * 240.00290 * 2 1 3 31 31 H 1.09008 * 109.47232 * 60.00233 * 3 2 1 32 32 H 1.08998 * 109.47614 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47147 * 300.00185 * 3 2 1 34 34 H 1.07992 * 126.06866 * 180.12210 * 6 5 4 35 35 H 1.07994 * 127.32709 * 179.75629 * 7 6 5 36 36 H 0.97000 * 119.99509 * 6.53701 * 11 9 8 37 37 H 1.07998 * 119.97107 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.92707 * 180.30018 * 14 13 12 39 39 H 1.07998 * 119.96777 * 179.69848 * 15 14 13 40 40 H 0.96995 * 119.99986 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.07458 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8586 -0.2825 2.4036 6 6 2.4039 -1.1141 3.2541 7 6 2.9790 -2.1573 2.5248 8 6 2.7182 -1.8637 1.1973 9 6 3.1154 -2.6562 0.0232 10 8 2.9106 -2.2284 -1.0969 11 7 3.7061 -3.8563 0.1885 12 6 4.2068 -4.5476 -0.9190 13 6 3.7138 -4.2762 -2.1897 14 6 4.2126 -4.9545 -3.2851 15 6 5.1937 -5.9131 -3.1197 16 6 5.6866 -6.1932 -1.8516 17 8 6.6503 -7.1356 -1.6900 18 6 6.9406 -7.5039 -0.4258 19 1 6.3363 -7.1439 0.3937 20 6 8.0147 -8.3449 -0.1780 21 7 8.7510 -8.7831 -1.1763 22 14 8.4163 -8.8556 1.5734 23 1 7.6825 -10.1031 1.9058 24 1 9.8771 -9.0927 1.6972 25 1 8.0088 -7.7772 2.5094 26 6 5.1923 -5.5094 -0.7498 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 2.4119 -1.0100 4.3290 35 1 3.5138 -3.0111 2.9136 36 1 3.7839 -4.2404 1.0758 37 1 2.9432 -3.5311 -2.3217 38 1 3.8313 -4.7384 -4.2722 39 1 5.5781 -6.4452 -3.9774 40 1 9.5027 -9.3711 -1.0028 41 1 5.5742 -5.7251 0.2370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764897167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:45 Heat of formation + Delta-G solvation = 29.411981 kcal Electronic energy + Delta-G solvation = -25391.381975 eV Core-core repulsion = 21659.508790 eV Total energy + Delta-G solvation = -3731.873186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.64429 -41.55046 -40.26486 -38.10560 -36.81100 -35.74613 -34.22977 -32.37416 -31.35240 -30.86771 -30.01374 -28.30131 -27.30802 -25.35063 -23.91335 -23.56342 -23.18487 -21.75305 -20.87816 -19.83479 -19.31259 -18.64576 -17.54925 -17.14968 -16.99997 -16.66300 -16.16350 -16.04721 -15.80181 -15.75740 -15.54532 -15.41816 -14.92514 -14.56885 -14.18503 -14.13858 -13.99431 -13.55532 -13.30759 -13.17919 -13.15834 -12.98901 -12.64535 -12.49503 -12.43285 -12.26683 -12.10061 -11.76307 -11.47459 -11.44237 -10.77345 -10.68821 -10.30390 -10.05776 -9.34534 -8.87169 -8.44687 -6.13758 -0.06019 0.57872 0.72977 1.24374 1.38321 1.47501 1.55541 1.62761 1.96522 2.04973 2.19953 2.85149 3.17488 3.32579 3.45201 3.51099 3.85641 3.95493 4.06969 4.11768 4.16722 4.38009 4.44568 4.54188 4.58123 4.60501 4.64161 4.66241 4.71596 4.82644 4.85724 5.04024 5.11777 5.12233 5.13862 5.32999 5.40191 5.53034 5.66041 5.70535 5.76077 6.02782 6.19444 6.29736 6.83189 6.99824 7.05040 7.79603 8.78387 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.003148 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.072958 B = 8891.886974 C =10209.512026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.116 3.884 3 C -0.151 4.151 4 N -0.253 5.253 5 N -0.285 5.285 6 C -0.007 4.007 7 C -0.176 4.176 8 C -0.066 4.066 9 C 0.593 3.407 10 O -0.540 6.540 11 N -0.638 5.638 12 C 0.185 3.815 13 C -0.218 4.218 14 C -0.052 4.052 15 C -0.215 4.215 16 C 0.136 3.864 17 O -0.227 6.227 18 C -0.411 4.411 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.017 2.983 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.248 1.248 26 C -0.259 4.259 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.219 0.781 35 H 0.187 0.813 36 H 0.425 0.575 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 16.707 8.124 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.208 4.208 4 N -0.043 5.043 5 N -0.118 5.118 6 C -0.182 4.182 7 C -0.205 4.205 8 C -0.193 4.193 9 C 0.382 3.618 10 O -0.419 6.419 11 N -0.281 5.281 12 C 0.090 3.910 13 C -0.238 4.238 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.085 3.915 17 O -0.134 6.134 18 C -0.487 4.487 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.171 1.171 26 C -0.281 4.281 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.235 0.765 35 H 0.204 0.796 36 H 0.264 0.736 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.871 17.894 6.988 24.918 hybrid contribution 1.178 -1.534 0.954 2.156 sum -14.693 16.360 7.943 23.380 Atomic orbital electron populations 1.22088 0.91494 1.02704 1.04606 1.22278 0.97080 0.95199 0.83787 1.22056 1.01053 0.93048 1.04657 1.46213 1.36953 1.14936 1.06149 1.73124 1.22239 1.26423 0.90024 1.24175 1.00329 0.92344 1.01326 1.22734 1.04862 1.03173 0.89724 1.21200 1.08573 0.94042 0.95531 1.17161 0.76988 0.80345 0.87313 1.90586 1.55163 1.70585 1.25517 1.42933 1.56497 1.18142 1.10494 1.17482 0.93304 0.92657 0.87509 1.21648 1.05726 1.05661 0.90809 1.21005 0.93707 0.92663 0.99645 1.20543 1.03350 1.04800 0.94757 1.19575 0.89025 0.88425 0.94518 1.84004 1.49047 1.49458 1.30855 1.21795 1.14635 1.29857 0.82400 0.87856 1.26597 0.94465 0.96227 1.04752 1.70187 1.18561 1.33221 1.33944 0.84602 0.77879 0.79388 0.74473 1.18910 1.20032 1.17088 1.20756 1.03454 1.03983 0.99888 0.87940 0.91273 0.93105 0.86092 0.91067 0.93323 0.87979 0.76463 0.79568 0.73603 0.82453 0.82848 0.86398 0.91887 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.46 71.98 0.68 -1.67 16 2 C 0.12 2.28 3.56 44.99 0.16 2.44 16 3 C -0.15 -2.41 9.29 71.98 0.67 -1.74 16 4 N -0.25 -5.79 3.09 -314.31 -0.97 -6.76 16 5 N -0.28 -6.18 11.51 -57.15 -0.66 -6.84 16 6 C -0.01 -0.12 12.03 85.18 1.02 0.90 16 7 C -0.18 -3.21 10.50 22.66 0.24 -2.98 16 8 C -0.07 -1.56 6.96 40.78 0.28 -1.28 16 9 C 0.59 16.59 7.70 86.57 0.67 17.26 16 10 O -0.54 -17.15 11.14 -4.15 -0.05 -17.20 16 11 N -0.64 -17.79 5.35 -306.77 -1.64 -19.43 16 12 C 0.19 6.65 6.49 38.16 0.25 6.90 16 13 C -0.22 -7.73 8.87 22.43 0.20 -7.54 16 14 C -0.05 -1.82 10.03 22.23 0.22 -1.60 16 15 C -0.21 -9.12 9.99 22.41 0.22 -8.90 16 16 C 0.14 6.62 6.63 22.56 0.15 6.77 16 17 O -0.23 -13.33 9.76 -22.86 -0.22 -13.56 16 18 C -0.41 -23.05 9.37 67.92 0.64 -22.41 16 19 H 0.10 5.20 5.46 -2.91 -0.02 5.19 16 20 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 21 N -0.92 -55.64 13.67 21.61 0.30 -55.34 16 22 Si 1.02 41.22 29.55 68.60 2.03 43.24 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 26 C -0.26 -10.88 8.98 22.52 0.20 -10.68 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.12 2.79 5.33 -2.39 -0.01 2.78 16 31 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.19 2.28 7.64 -2.91 -0.02 2.26 16 36 H 0.43 9.21 7.87 -92.71 -0.73 8.48 16 37 H 0.16 5.35 5.22 -4.79 -0.03 5.32 16 38 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 39 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.13 5.38 5.84 -2.91 -0.02 5.36 16 Total: -1.00 -73.50 349.37 5.19 -68.30 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.34 Total: 32.89 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 6.07 Total: -25.31 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.97 Total: -88.36 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.27 Total: -30.75 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -73.50 5.19 -68.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764897167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.715 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds