Wall clock time and date at job start Fri Apr 10 2020 23:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.50696 * 109.47017 * 60.00350 * 4 2 1 6 6 O 1.21303 * 120.00269 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99771 * 179.97438 * 5 4 2 8 8 C 1.40595 * 119.99763 * 179.97438 * 7 5 4 9 9 C 1.40645 * 126.08397 * 359.70024 * 8 7 5 10 10 N 1.30905 * 108.39190 * 179.80833 * 9 8 7 11 11 N 1.40075 * 108.40385 * 0.44441 * 10 9 8 12 12 C 1.37322 * 126.06921 * 179.69725 * 11 10 9 13 13 H 1.08004 * 119.99673 * 180.02562 * 12 11 10 14 14 C 1.38986 * 120.00186 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99998 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47307 * 90.00048 * 16 14 12 18 18 H 1.48500 * 109.46990 * 210.00351 * 16 14 12 19 19 H 1.48508 * 109.47075 * 329.99973 * 16 14 12 20 20 C 1.35678 * 126.08443 * 179.97438 * 8 7 5 21 21 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 22 22 C 1.38237 * 119.99744 * 270.00236 * 21 2 1 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 90.01446 * 21 2 1 27 27 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 29 29 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 30 30 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 33 33 H 0.96998 * 120.00201 * 0.02562 * 7 5 4 34 34 H 1.08007 * 125.80515 * 359.96105 * 9 8 7 35 35 H 0.96999 * 119.99631 * 179.97438 * 15 14 12 36 36 H 1.08008 * 126.24032 * 359.97438 * 20 8 7 37 37 H 1.08005 * 120.00088 * 359.97438 * 22 21 2 38 38 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 41 41 H 1.07998 * 119.99975 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 8 0.8399 0.9751 -2.3684 7 7 1.8636 -0.4712 -3.7038 8 6 1.3945 0.1913 -4.8517 9 6 0.5769 1.3355 -4.8718 10 7 0.3537 1.6617 -6.1198 11 7 1.0086 0.7366 -6.9427 12 6 1.0097 0.7346 -8.3159 13 1 1.5504 -0.0297 -8.8544 14 6 0.3150 1.7162 -9.0128 15 7 -0.3418 2.6456 -8.3581 16 14 0.3159 1.7131 -10.8808 17 1 -0.8270 0.9039 -11.3750 18 1 0.1877 3.1064 -11.3781 19 1 1.5878 1.1265 -11.3742 20 6 1.6457 -0.1625 -6.1372 21 6 2.0323 -0.7104 1.2305 22 6 2.2627 0.0005 2.3934 23 6 2.7240 -0.6510 3.5219 24 6 2.9540 -2.0137 3.4878 25 6 2.7283 -2.7238 2.3235 26 6 2.2631 -2.0730 1.1962 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1299 -0.7217 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 2.4212 -1.2599 -3.7928 34 1 0.1997 1.8579 -4.0050 35 1 -0.8263 3.3309 -8.8445 36 1 2.2415 -1.0022 -6.4636 37 1 2.0830 1.0652 2.4200 38 1 2.9044 -0.0955 4.4303 39 1 3.3140 -2.5227 4.3697 40 1 2.9121 -3.7877 2.2956 41 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780921335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:52 Heat of formation + Delta-G solvation = 29.338379 kcal Electronic energy + Delta-G solvation = -25301.714094 eV Core-core repulsion = 21569.837716 eV Total energy + Delta-G solvation = -3731.876377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43515 -39.63590 -38.56672 -36.82005 -34.12165 -33.13447 -32.84150 -31.09732 -30.31676 -29.86454 -28.51595 -27.09736 -24.77694 -23.50405 -22.72246 -21.17125 -20.66429 -19.78628 -19.34863 -18.00785 -17.33351 -16.57433 -15.95637 -15.64502 -15.40486 -15.30524 -14.91300 -14.72785 -14.31988 -13.94288 -13.89746 -13.62190 -13.22550 -13.05999 -12.81906 -12.72078 -12.22843 -12.04549 -11.82881 -11.64842 -11.56572 -11.36021 -11.29862 -11.19654 -10.92185 -10.80786 -10.51802 -10.10917 -10.00409 -9.14487 -9.12095 -8.96221 -8.93684 -8.74355 -8.01682 -6.64579 -6.52616 -4.19331 1.09881 1.18089 2.88674 3.06273 3.07700 3.11551 3.53598 3.60450 3.71692 3.89051 4.24547 4.46383 4.49530 4.61341 4.76949 4.80526 4.85177 4.93852 5.02543 5.05681 5.22621 5.33093 5.40498 5.51096 5.67969 5.72210 5.81118 5.92823 6.05437 6.23898 6.27473 6.29027 6.37789 6.51007 6.57161 6.77264 6.94922 7.01034 7.19621 7.30694 7.72382 7.89713 8.24452 8.34467 8.68929 8.95590 9.41956 9.71669 10.43479 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.044970 B = 0.002379 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.484318 B =11768.168800 C =12147.619291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.195 3.805 3 O -0.532 6.532 4 C -0.165 4.165 5 C 0.499 3.501 6 O -0.512 6.512 7 N -0.630 5.630 8 C -0.057 4.057 9 C -0.034 4.034 10 N -0.261 5.261 11 N -0.144 5.144 12 C -0.324 4.324 13 H 0.115 0.885 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.086 4.086 21 C -0.112 4.112 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.115 4.115 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.369 0.631 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.394 0.606 34 H 0.177 0.823 35 H 0.274 0.726 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 -10.509 18.192 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.154 3.846 3 O -0.336 6.336 4 C -0.206 4.206 5 C 0.284 3.716 6 O -0.388 6.388 7 N -0.272 5.272 8 C -0.163 4.163 9 C -0.209 4.209 10 N -0.092 5.092 11 N 0.088 4.912 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.237 4.237 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.133 4.133 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.215 0.785 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.227 0.773 34 H 0.193 0.807 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.452 -8.622 17.447 20.211 hybrid contribution 1.502 -1.437 -0.248 2.093 sum 6.954 -10.059 17.199 21.103 Atomic orbital electron populations 1.22003 0.91228 1.02066 1.05152 1.19596 0.95532 0.81564 0.87932 1.86731 1.25779 1.24529 1.96568 1.22444 1.02587 1.01319 0.94255 1.20092 0.82234 0.85578 0.83673 1.90577 1.37117 1.25596 1.85532 1.42574 1.50864 1.29664 1.04144 1.17276 1.12383 1.01933 0.84681 1.24128 1.02734 0.97653 0.96398 1.78250 1.19384 1.12931 0.98623 1.44536 1.27020 1.14601 1.05045 1.19844 1.34102 1.14732 0.76901 0.86719 1.25635 0.95281 0.94963 1.01254 1.70221 1.22876 1.10293 1.36324 0.85841 0.79326 0.78321 0.80720 1.19620 1.20106 1.18852 1.21258 1.11021 1.02001 0.89443 1.20676 0.99662 0.94428 0.96457 1.21064 0.98224 1.00637 0.92069 1.21176 0.99764 0.94714 0.98358 1.21173 1.00409 0.94512 0.98056 1.21144 0.99817 0.99862 0.93166 1.21147 0.99368 0.94000 0.98739 0.92380 0.88018 0.92086 0.78508 0.88996 0.88389 0.77328 0.80665 0.91506 0.83862 0.85254 0.86120 0.86291 0.86091 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.50 37.15 0.32 -1.67 16 2 C 0.20 2.33 0.81 -91.77 -0.07 2.26 16 3 O -0.53 -7.17 10.86 -53.48 -0.58 -7.75 16 4 C -0.17 -1.86 4.25 -27.88 -0.12 -1.98 16 5 C 0.50 8.28 7.36 -10.99 -0.08 8.20 16 6 O -0.51 -10.57 10.11 -12.71 -0.13 -10.70 16 7 N -0.63 -10.89 5.47 -10.00 -0.05 -10.95 16 8 C -0.06 -1.32 6.90 -83.84 -0.58 -1.90 16 9 C -0.03 -0.89 10.85 -17.04 -0.18 -1.08 16 10 N -0.26 -7.68 10.40 30.80 0.32 -7.36 16 11 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 12 C -0.32 -8.65 10.25 -14.82 -0.15 -8.80 16 13 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.80 11.81 55.49 0.66 -21.15 16 16 Si 0.93 19.10 29.55 -169.99 -5.02 14.08 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.09 -2.05 11.49 -16.40 -0.19 -2.23 16 21 C -0.11 -1.14 4.81 -104.62 -0.50 -1.64 16 22 C -0.10 -1.00 9.35 -39.58 -0.37 -1.37 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.11 -1.03 9.14 -39.58 -0.36 -1.39 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 1.70 5.51 -51.93 -0.29 1.41 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.37 3.73 9.04 45.56 0.41 4.14 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.88 6.51 -51.93 -0.34 0.55 16 33 H 0.39 5.20 8.83 -40.82 -0.36 4.84 16 34 H 0.18 4.64 5.92 -52.48 -0.31 4.33 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.14 2.83 8.06 -52.48 -0.42 2.40 16 37 H 0.13 1.27 7.48 -52.48 -0.39 0.87 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.93 6.17 -52.49 -0.32 0.60 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -34.79 344.86 -7.35 -42.14 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.11 Total: 15.22 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.59 Total: -14.71 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.88 Total: -43.49 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.71 Total: -18.44 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.79 -7.35 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780921335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.481 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds