Wall clock time and date at job start Fri Apr 10 2020 23:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.50696 * 109.47017 * 60.00350 * 4 2 1 6 6 O 1.21303 * 120.00269 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99771 * 179.97438 * 5 4 2 8 8 C 1.40595 * 119.99763 * 179.97438 * 7 5 4 9 9 C 1.40645 * 126.08397 * 359.70024 * 8 7 5 10 10 N 1.30905 * 108.39190 * 179.80833 * 9 8 7 11 11 N 1.40075 * 108.40385 * 0.44441 * 10 9 8 12 12 C 1.37322 * 126.06921 * 179.69725 * 11 10 9 13 13 H 1.08004 * 119.99673 * 180.02562 * 12 11 10 14 14 C 1.38986 * 120.00186 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99998 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47307 * 90.00048 * 16 14 12 18 18 H 1.48500 * 109.46990 * 210.00351 * 16 14 12 19 19 H 1.48508 * 109.47075 * 329.99973 * 16 14 12 20 20 C 1.35678 * 126.08443 * 179.97438 * 8 7 5 21 21 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 22 22 C 1.38237 * 119.99744 * 270.00236 * 21 2 1 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 90.01446 * 21 2 1 27 27 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 29 29 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 30 30 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 33 33 H 0.96998 * 120.00201 * 0.02562 * 7 5 4 34 34 H 1.08007 * 125.80515 * 359.96105 * 9 8 7 35 35 H 0.96999 * 119.99631 * 179.97438 * 15 14 12 36 36 H 1.08008 * 126.24032 * 359.97438 * 20 8 7 37 37 H 1.08005 * 120.00088 * 359.97438 * 22 21 2 38 38 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 41 41 H 1.07998 * 119.99975 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 8 0.8399 0.9751 -2.3684 7 7 1.8636 -0.4712 -3.7038 8 6 1.3945 0.1913 -4.8517 9 6 0.5769 1.3355 -4.8718 10 7 0.3537 1.6617 -6.1198 11 7 1.0086 0.7366 -6.9427 12 6 1.0097 0.7346 -8.3159 13 1 1.5504 -0.0297 -8.8544 14 6 0.3150 1.7162 -9.0128 15 7 -0.3418 2.6456 -8.3581 16 14 0.3159 1.7131 -10.8808 17 1 -0.8270 0.9039 -11.3750 18 1 0.1877 3.1064 -11.3781 19 1 1.5878 1.1265 -11.3742 20 6 1.6457 -0.1625 -6.1372 21 6 2.0323 -0.7104 1.2305 22 6 2.2627 0.0005 2.3934 23 6 2.7240 -0.6510 3.5219 24 6 2.9540 -2.0137 3.4878 25 6 2.7283 -2.7238 2.3235 26 6 2.2631 -2.0730 1.1962 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1299 -0.7217 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 2.4212 -1.2599 -3.7928 34 1 0.1997 1.8579 -4.0050 35 1 -0.8263 3.3309 -8.8445 36 1 2.2415 -1.0022 -6.4636 37 1 2.0830 1.0652 2.4200 38 1 2.9044 -0.0955 4.4303 39 1 3.3140 -2.5227 4.3697 40 1 2.9121 -3.7877 2.2956 41 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780921335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:51 Heat of formation + Delta-G solvation = 5.137819 kcal Electronic energy + Delta-G solvation = -25302.763509 eV Core-core repulsion = 21569.837716 eV Total energy + Delta-G solvation = -3732.925792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76156 -41.05013 -39.82570 -37.81758 -35.81764 -34.90032 -33.80572 -32.23643 -31.73695 -30.83861 -29.90087 -28.57737 -26.65226 -24.37489 -23.42690 -22.84267 -22.08078 -21.14496 -20.87158 -19.34501 -18.73484 -17.53361 -17.36557 -17.15019 -16.80998 -16.51088 -15.93817 -15.69352 -15.51491 -15.35782 -15.12500 -14.83868 -14.76066 -14.39279 -14.02394 -13.57818 -13.46009 -13.27274 -13.19297 -13.00590 -12.91311 -12.78635 -12.71772 -12.47061 -12.08459 -11.99916 -11.69591 -11.63733 -11.00531 -10.94895 -10.78540 -10.33624 -10.07069 -9.77201 -9.64377 -8.46187 -8.45223 -6.21811 0.44173 0.54758 1.26253 1.39907 1.57563 1.60612 1.92562 2.08296 2.35485 2.58945 2.90227 2.95097 3.10742 3.36862 3.65593 3.68718 4.07466 4.15842 4.20993 4.27016 4.35337 4.47367 4.55237 4.65960 4.68282 4.71730 4.78351 4.95485 4.97596 5.02774 5.12623 5.15836 5.21764 5.32409 5.37824 5.60366 5.64056 5.67525 5.72039 5.98852 6.14990 6.37290 6.77474 6.87461 6.90349 7.48624 7.57186 7.73764 8.54347 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.044970 B = 0.002379 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.484318 B =11768.168800 C =12147.619291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.196 3.804 3 O -0.558 6.558 4 C -0.150 4.150 5 C 0.495 3.505 6 O -0.554 6.554 7 N -0.622 5.622 8 C -0.038 4.038 9 C -0.062 4.062 10 N -0.312 5.312 11 N -0.171 5.171 12 C -0.354 4.354 13 H 0.141 0.859 14 C -0.009 4.009 15 N -0.827 5.827 16 Si 1.019 2.981 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.243 1.243 20 C -0.084 4.084 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.381 0.619 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.166 0.834 35 H 0.275 0.725 36 H 0.187 0.813 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 -13.888 18.637 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 O -0.365 6.365 4 C -0.190 4.190 5 C 0.283 3.717 6 O -0.432 6.432 7 N -0.269 5.269 8 C -0.145 4.145 9 C -0.237 4.237 10 N -0.145 5.145 11 N 0.060 4.940 12 C -0.485 4.485 13 H 0.158 0.842 14 C -0.220 4.220 15 N -0.455 5.455 16 Si 0.838 3.162 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.166 1.166 20 C -0.234 4.234 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.136 4.136 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.229 0.771 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.182 0.818 35 H 0.085 0.915 36 H 0.204 0.796 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.651 -12.054 17.934 22.923 hybrid contribution 0.861 -0.441 -0.152 0.980 sum 8.513 -12.496 17.782 23.341 Atomic orbital electron populations 1.21963 0.93017 1.02572 1.02940 1.19557 0.94325 0.81275 0.89319 1.86700 1.27052 1.25962 1.96740 1.22455 1.04296 1.01875 0.90398 1.21152 0.80847 0.84988 0.84666 1.90592 1.38732 1.27702 1.86189 1.42568 1.51274 1.30277 1.02741 1.17347 1.10155 1.00392 0.86576 1.24160 1.04447 0.99551 0.95556 1.78140 1.21342 1.15039 0.99945 1.44828 1.28118 1.15366 1.05714 1.20594 1.34950 1.15889 0.77069 0.84207 1.26896 0.94109 0.93946 1.07060 1.70413 1.24653 1.11650 1.38817 0.84593 0.80224 0.78200 0.73171 1.18888 1.20322 1.16639 1.22020 1.10131 1.02095 0.89191 1.20441 1.01003 0.95050 0.95495 1.21101 0.99177 1.00426 0.92821 1.21401 0.99458 0.95407 0.98444 1.21518 0.99520 0.94264 0.99026 1.21479 0.98896 1.01114 0.92727 1.21365 0.99049 0.93303 0.99928 0.92927 0.91770 0.90224 0.77131 0.85866 0.85087 0.74476 0.81751 0.91516 0.79574 0.86302 0.84687 0.84071 0.83711 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.50 71.98 0.61 -3.38 16 2 C 0.20 4.47 0.81 -11.54 -0.01 4.46 16 3 O -0.56 -15.17 10.86 -131.53 -1.43 -16.60 16 4 C -0.15 -2.95 4.25 29.85 0.13 -2.83 16 5 C 0.50 15.95 7.36 87.66 0.64 16.59 16 6 O -0.55 -23.56 10.11 14.35 0.15 -23.42 16 7 N -0.62 -20.39 5.47 -303.93 -1.66 -22.05 16 8 C -0.04 -1.76 6.90 37.73 0.26 -1.50 16 9 C -0.06 -3.43 10.85 85.42 0.93 -2.51 16 10 N -0.31 -19.25 10.40 -56.47 -0.59 -19.84 16 11 N -0.17 -9.62 3.74 -190.01 -0.71 -10.33 16 12 C -0.35 -18.99 10.25 84.01 0.86 -18.13 16 13 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 14 C -0.01 -0.47 5.50 84.95 0.47 -0.01 16 15 N -0.83 -48.79 11.81 21.66 0.26 -48.53 16 16 Si 1.02 39.17 29.55 68.60 2.03 41.19 16 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 20 C -0.08 -3.91 11.49 83.38 0.96 -2.95 16 21 C -0.12 -2.20 4.81 -19.86 -0.10 -2.29 16 22 C -0.12 -2.18 9.35 22.27 0.21 -1.97 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 25 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 26 C -0.12 -1.70 9.14 22.27 0.20 -1.50 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 2.25 5.51 -2.39 -0.01 2.24 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.38 7.62 9.04 -74.06 -0.67 6.95 16 31 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.13 1.77 6.51 -2.39 -0.02 1.75 16 33 H 0.42 9.53 8.83 -92.71 -0.82 8.71 16 34 H 0.17 9.32 5.92 -2.91 -0.02 9.30 16 35 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 37 H 0.12 2.37 7.48 -2.91 -0.02 2.35 16 38 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.14 1.44 6.17 -2.91 -0.02 1.42 16 Total: -1.00 -81.56 344.86 3.48 -78.08 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -0.40 Total: 41.92 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.84 Total: -20.43 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -2.70 Total: -100.75 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.28 Total: -40.02 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.19 kcal Total: -81.56 3.48 -78.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780921335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.220 kcal (2) G-P(sol) polarization free energy of solvation -81.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds