Wall clock time and date at job start Fri Apr 10 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46840 * 2 1 4 4 H 1.09006 * 109.46811 * 304.99438 * 3 2 1 5 5 C 1.50696 * 109.46926 * 185.00379 * 3 2 1 6 6 H 1.08001 * 119.99777 * 239.99874 * 5 3 2 7 7 C 1.37880 * 120.00455 * 59.99397 * 5 3 2 8 8 N 1.31512 * 119.99682 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46908 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46600 * 120.00219 * 9 7 5 12 12 H 1.48491 * 109.47301 * 240.00401 * 9 7 5 13 13 O 1.45194 * 109.47279 * 65.00110 * 3 2 1 14 14 C 1.34741 * 116.99836 * 269.99684 * 13 3 2 15 15 O 1.21484 * 119.99938 * 0.02562 * 14 13 3 16 16 C 1.47589 * 119.99962 * 179.97438 * 14 13 3 17 17 C 1.39764 * 120.03110 * 179.97438 * 16 14 13 18 18 C 1.37645 * 119.97074 * 180.02562 * 17 16 14 19 19 C 1.39507 * 120.02772 * 0.02562 * 18 17 16 20 20 C 1.48281 * 119.96777 * 179.97438 * 19 18 17 21 21 N 1.31555 * 125.65765 * 359.96279 * 20 19 18 22 22 N 1.40434 * 106.70438 * 179.78171 * 21 20 19 23 23 H 0.96998 * 126.74462 * 180.27432 * 22 21 20 24 24 C 1.34573 * 106.51498 * 0.40547 * 22 21 20 25 25 C 1.50706 * 125.84990 * 179.85519 * 24 22 21 26 26 N 1.30632 * 108.30743 * 359.59261 * 24 22 21 27 27 C 1.39508 * 120.06348 * 0.27680 * 19 18 17 28 28 C 1.37644 * 120.03087 * 359.44546 * 27 19 18 29 29 H 1.08994 * 109.47260 * 60.00510 * 1 2 3 30 30 H 1.09004 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99955 * 1 2 3 32 32 H 1.08996 * 109.47437 * 239.99880 * 2 1 3 33 33 H 1.08994 * 109.47260 * 119.99490 * 2 1 3 34 34 H 0.97005 * 119.99675 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.01234 * 0.04949 * 17 16 14 36 36 H 1.07998 * 119.98588 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.46995 * 269.71673 * 25 24 22 38 38 H 1.08994 * 109.46790 * 29.71360 * 25 24 22 39 39 H 1.08997 * 109.47305 * 149.71801 * 25 24 22 40 40 H 1.08004 * 119.98601 * 179.70059 * 27 19 18 41 41 H 1.08001 * 120.01879 * 180.25226 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5987 1.5465 -0.1943 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6103 13 8 1.6559 2.0917 1.2406 14 6 0.4682 2.7279 1.2559 15 8 -0.2275 2.7394 0.2601 16 6 0.0120 3.4097 2.4828 17 6 -1.2196 4.0702 2.4992 18 6 -1.6436 4.7062 3.6440 19 6 -0.8443 4.6920 4.7873 20 6 -1.3021 5.3780 6.0196 21 7 -2.4358 6.0310 6.1577 22 7 -2.4654 6.5138 7.4761 23 1 -3.1737 7.0329 7.8882 24 6 -1.3168 6.1176 8.0546 25 6 -0.8981 6.4050 9.4735 26 7 -0.6293 5.4362 7.1773 27 6 0.3881 4.0384 4.7704 28 6 0.8120 3.3968 3.6289 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8293 -0.0611 -2.9499 35 1 -1.8385 4.0814 1.6142 36 1 -2.5954 5.2163 3.6571 37 1 -0.3374 7.3392 9.5047 38 1 -1.7836 6.4916 10.1031 39 1 -0.2705 5.5922 9.8389 40 1 1.0080 4.0323 5.6548 41 1 1.7643 2.8874 3.6173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:56 Heat of formation + Delta-G solvation = 13.402925 kcal Electronic energy + Delta-G solvation = -24864.886947 eV Core-core repulsion = 21132.319557 eV Total energy + Delta-G solvation = -3732.567391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.42429 -39.89800 -38.48059 -35.72836 -33.82780 -33.43993 -32.80680 -31.44801 -31.00972 -30.79408 -28.37435 -27.27129 -25.01661 -23.27073 -22.67564 -21.61448 -21.21397 -20.40444 -19.48604 -18.30377 -17.51366 -16.57292 -16.30612 -16.10827 -15.56358 -15.25664 -14.94240 -14.55322 -14.24974 -14.07533 -13.60098 -13.47045 -13.37253 -13.07579 -12.81667 -12.75948 -12.23691 -12.18350 -11.91099 -11.46391 -11.32270 -11.15350 -11.06801 -10.95036 -10.68703 -10.61802 -10.37991 -10.25386 -10.05550 -9.78737 -9.63771 -9.34895 -8.98188 -8.77670 -8.62608 -8.43070 -6.16497 -4.23239 0.45000 1.37152 1.42638 2.22007 2.51356 3.25413 3.27576 3.32272 3.36883 3.49109 3.65299 4.03857 4.13883 4.35067 4.37229 4.80898 4.89081 4.99332 5.03756 5.15591 5.26389 5.38808 5.39323 5.61262 5.67558 5.88235 5.96573 6.08199 6.26605 6.32503 6.35152 6.39276 6.47417 6.54237 6.66713 6.82574 6.90815 6.99768 7.19920 7.26583 7.63949 7.70645 7.76141 7.95705 8.17656 8.63900 8.90541 9.41819 10.90376 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.002553 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.232236 B =10964.697177 C =11763.522182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.349 6.349 14 C 0.494 3.506 15 O -0.510 6.510 16 C -0.094 4.094 17 C -0.066 4.066 18 C -0.097 4.097 19 C -0.001 4.001 20 C 0.275 3.725 21 N -0.303 5.303 22 N -0.484 5.484 23 H 0.441 0.559 24 C 0.285 3.715 25 C -0.078 4.078 26 N -0.528 5.528 27 C -0.088 4.088 28 C -0.067 4.067 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 11.136 21.495 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.557 4.557 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.265 6.265 14 C 0.338 3.662 15 O -0.401 6.401 16 C -0.096 4.096 17 C -0.084 4.084 18 C -0.117 4.117 19 C -0.004 4.004 20 C -0.004 4.004 21 N -0.132 5.132 22 N -0.203 5.203 23 H 0.287 0.713 24 C 0.006 3.994 25 C -0.137 4.137 26 N -0.257 5.257 27 C -0.108 4.108 28 C -0.086 4.086 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.159 0.841 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.763 10.933 20.497 25.603 hybrid contribution 0.320 0.344 0.178 0.503 sum -10.443 11.277 20.675 25.762 Atomic orbital electron populations 1.21868 0.98373 0.99041 1.00798 1.22021 0.92652 0.99291 1.03396 1.20722 0.95076 0.88786 0.78537 0.93413 1.21075 0.89606 1.38818 1.06245 0.91213 1.24888 0.99227 0.94802 0.95081 1.69903 1.35272 1.37909 1.09476 0.86234 0.83933 0.77851 0.78219 1.19446 1.20746 1.20796 1.86533 1.33481 1.62296 1.44169 1.20916 0.81150 0.76956 0.87215 1.90778 1.55540 1.58600 1.35206 1.19656 0.96024 1.00651 0.93284 1.21192 0.94570 0.94286 0.98353 1.21042 0.99872 0.99435 0.91370 1.17636 0.95418 0.98494 0.88812 1.22321 0.88893 0.96045 0.93187 1.78260 1.21191 1.18878 0.94899 1.47998 1.18342 1.44349 1.09573 0.71342 1.24425 0.84321 0.93130 0.97493 1.20425 1.03079 1.04745 0.85476 1.70481 1.32131 1.22723 1.00350 1.21165 0.94763 0.96056 0.98815 1.21546 0.99841 0.96211 0.90954 0.92792 0.94804 0.94898 0.87310 0.93913 0.92458 0.83959 0.84630 0.88818 0.89794 0.88115 0.84086 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.88 2.25 -27.88 -0.06 5.82 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.44 16 9 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 O -0.35 -8.28 9.04 -40.60 -0.37 -8.65 16 14 C 0.49 10.59 6.34 34.55 0.22 10.81 16 15 O -0.51 -11.96 13.52 -19.25 -0.26 -12.22 16 16 C -0.09 -1.61 5.88 -104.94 -0.62 -2.23 16 17 C -0.07 -0.98 9.58 -39.23 -0.38 -1.36 16 18 C -0.10 -1.28 9.66 -39.33 -0.38 -1.66 16 19 C 0.00 -0.01 5.88 -104.82 -0.62 -0.63 16 20 C 0.27 3.61 7.77 -156.59 -1.22 2.40 16 21 N -0.30 -3.66 12.41 32.09 0.40 -3.26 16 22 N -0.48 -3.85 7.44 32.61 0.24 -3.61 16 23 H 0.44 1.70 8.96 -182.35 -1.63 0.06 16 24 C 0.28 2.33 8.22 -155.73 -1.28 1.05 16 25 C -0.08 -0.24 10.51 36.01 0.38 0.14 16 26 N -0.53 -6.32 10.81 -8.57 -0.09 -6.41 16 27 C -0.09 -1.18 9.67 -39.33 -0.38 -1.56 16 28 C -0.07 -1.01 9.60 -39.23 -0.38 -1.39 16 29 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 32 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 36 H 0.14 1.57 7.82 -52.49 -0.41 1.16 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.14 1.69 7.82 -52.48 -0.41 1.28 16 41 H 0.15 2.19 7.60 -52.49 -0.40 1.79 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -33.66 352.60 -10.41 -44.07 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.31 Total: 1.38 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.94 Total: -8.20 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 1.17 Total: -37.72 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.63 Total: -20.87 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.66 -10.41 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.475 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds