Wall clock time and date at job start Fri Apr 10 2020 23:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46840 * 2 1 4 4 H 1.09006 * 109.46811 * 304.99438 * 3 2 1 5 5 C 1.50696 * 109.46926 * 185.00379 * 3 2 1 6 6 H 1.08001 * 119.99777 * 239.99874 * 5 3 2 7 7 C 1.37880 * 120.00455 * 59.99397 * 5 3 2 8 8 N 1.31512 * 119.99682 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46908 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46600 * 120.00219 * 9 7 5 12 12 H 1.48491 * 109.47301 * 240.00401 * 9 7 5 13 13 O 1.45194 * 109.47279 * 65.00110 * 3 2 1 14 14 C 1.34741 * 116.99836 * 269.99684 * 13 3 2 15 15 O 1.21484 * 119.99938 * 0.02562 * 14 13 3 16 16 C 1.47589 * 119.99962 * 179.97438 * 14 13 3 17 17 C 1.39764 * 120.03110 * 179.97438 * 16 14 13 18 18 C 1.37645 * 119.97074 * 180.02562 * 17 16 14 19 19 C 1.39507 * 120.02772 * 0.02562 * 18 17 16 20 20 C 1.48281 * 119.96777 * 179.97438 * 19 18 17 21 21 N 1.31555 * 125.65765 * 359.96279 * 20 19 18 22 22 N 1.40434 * 106.70438 * 179.78171 * 21 20 19 23 23 H 0.96998 * 126.74462 * 180.27432 * 22 21 20 24 24 C 1.34573 * 106.51498 * 0.40547 * 22 21 20 25 25 C 1.50706 * 125.84990 * 179.85519 * 24 22 21 26 26 N 1.30632 * 108.30743 * 359.59261 * 24 22 21 27 27 C 1.39508 * 120.06348 * 0.27680 * 19 18 17 28 28 C 1.37644 * 120.03087 * 359.44546 * 27 19 18 29 29 H 1.08994 * 109.47260 * 60.00510 * 1 2 3 30 30 H 1.09004 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99955 * 1 2 3 32 32 H 1.08996 * 109.47437 * 239.99880 * 2 1 3 33 33 H 1.08994 * 109.47260 * 119.99490 * 2 1 3 34 34 H 0.97005 * 119.99675 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.01234 * 0.04949 * 17 16 14 36 36 H 1.07998 * 119.98588 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.46995 * 269.71673 * 25 24 22 38 38 H 1.08994 * 109.46790 * 29.71360 * 25 24 22 39 39 H 1.08997 * 109.47305 * 149.71801 * 25 24 22 40 40 H 1.08004 * 119.98601 * 179.70059 * 27 19 18 41 41 H 1.08001 * 120.01879 * 180.25226 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5987 1.5465 -0.1943 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6103 13 8 1.6559 2.0917 1.2406 14 6 0.4682 2.7279 1.2559 15 8 -0.2275 2.7394 0.2601 16 6 0.0120 3.4097 2.4828 17 6 -1.2196 4.0702 2.4992 18 6 -1.6436 4.7062 3.6440 19 6 -0.8443 4.6920 4.7873 20 6 -1.3021 5.3780 6.0196 21 7 -2.4358 6.0310 6.1577 22 7 -2.4654 6.5138 7.4761 23 1 -3.1737 7.0329 7.8882 24 6 -1.3168 6.1176 8.0546 25 6 -0.8981 6.4050 9.4735 26 7 -0.6293 5.4362 7.1773 27 6 0.3881 4.0384 4.7704 28 6 0.8120 3.3968 3.6289 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8293 -0.0611 -2.9499 35 1 -1.8385 4.0814 1.6142 36 1 -2.5954 5.2163 3.6571 37 1 -0.3374 7.3392 9.5047 38 1 -1.7836 6.4916 10.1031 39 1 -0.2705 5.5922 9.8389 40 1 1.0080 4.0323 5.6548 41 1 1.7643 2.8874 3.6173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:55 Heat of formation + Delta-G solvation = -5.628317 kcal Electronic energy + Delta-G solvation = -24865.712204 eV Core-core repulsion = 21132.319557 eV Total energy + Delta-G solvation = -3733.392647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.18930 -41.52029 -39.82987 -37.58114 -35.51579 -34.62189 -33.51893 -33.36012 -32.16121 -31.90066 -29.37313 -28.87035 -26.35542 -25.09798 -23.86957 -22.88520 -22.20381 -21.69377 -21.18082 -19.31600 -18.94104 -18.45681 -17.81369 -17.08835 -16.94853 -16.81768 -16.48370 -15.90681 -15.44849 -15.05635 -14.77128 -14.74837 -14.51798 -14.30764 -13.94325 -13.79376 -13.51107 -13.38748 -13.34208 -13.11523 -13.07824 -12.81821 -12.81241 -12.53937 -12.22208 -12.11432 -11.75583 -11.55844 -11.47845 -11.32747 -11.20835 -10.84845 -10.81096 -10.52098 -10.11038 -9.71800 -8.26042 -6.42430 -0.71950 0.29938 0.57400 1.39114 1.43326 1.43830 1.57557 1.60949 1.96470 1.99193 2.42680 2.76027 2.79901 3.03766 3.38629 3.70225 3.85292 3.90239 3.94790 4.22278 4.35986 4.39492 4.40559 4.54730 4.60671 4.70579 4.73142 4.81915 4.90030 4.97592 5.05107 5.08831 5.14193 5.22193 5.25225 5.30841 5.34657 5.41251 5.53003 5.67845 5.68374 5.96490 6.11329 6.15720 6.61836 6.94147 6.95703 7.28459 8.81127 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.002553 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.232236 B =10964.697177 C =11763.522182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.547 4.547 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.277 1.277 13 O -0.354 6.354 14 C 0.491 3.509 15 O -0.538 6.538 16 C -0.120 4.120 17 C -0.061 4.061 18 C -0.090 4.090 19 C 0.007 3.993 20 C 0.253 3.747 21 N -0.322 5.322 22 N -0.469 5.469 23 H 0.459 0.541 24 C 0.293 3.707 25 C -0.076 4.076 26 N -0.560 5.560 27 C -0.081 4.081 28 C -0.063 4.063 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.270 0.730 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 12.175 24.438 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.187 1.187 11 H -0.197 1.197 12 H -0.203 1.203 13 O -0.271 6.271 14 C 0.337 3.663 15 O -0.431 6.431 16 C -0.122 4.122 17 C -0.079 4.079 18 C -0.109 4.109 19 C 0.005 3.995 20 C -0.026 4.026 21 N -0.153 5.153 22 N -0.191 5.191 23 H 0.309 0.691 24 C 0.016 3.984 25 C -0.134 4.134 26 N -0.290 5.290 27 C -0.101 4.101 28 C -0.082 4.082 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.175 0.825 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.919 11.995 23.477 28.536 hybrid contribution 0.229 0.159 -0.560 0.626 sum -10.690 12.154 22.917 28.057 Atomic orbital electron populations 1.21723 0.96395 1.00623 1.00066 1.21869 0.94379 0.98021 1.02449 1.20439 0.94690 0.89316 0.78430 0.97441 1.21345 0.90341 1.39831 1.06920 0.91489 1.25806 1.04233 0.93917 0.94364 1.70023 1.37348 1.38001 1.09879 0.85157 0.77723 0.78303 0.78360 1.18726 1.19662 1.20258 1.86515 1.35042 1.62877 1.42631 1.21659 0.79959 0.76216 0.88430 1.90751 1.55967 1.59702 1.36648 1.19471 0.97763 1.02881 0.92103 1.21223 0.93663 0.93905 0.99106 1.21155 1.00453 0.98824 0.90507 1.17853 0.95078 0.97273 0.89338 1.22210 0.89743 0.97174 0.93503 1.78140 1.20968 1.18982 0.97170 1.47943 1.18997 1.43838 1.08276 0.69129 1.25291 0.83434 0.91114 0.98575 1.20701 1.04736 1.05435 0.82575 1.70455 1.33394 1.24522 1.00618 1.21240 0.94973 0.95373 0.98519 1.21528 0.99529 0.96270 0.90837 0.94454 0.91934 0.94649 0.89403 0.93445 0.92047 0.83846 0.82765 0.87130 0.86621 0.87992 0.82509 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.56 71.98 0.62 -5.32 16 2 C -0.13 -6.65 5.49 30.60 0.17 -6.48 16 3 C 0.22 12.48 2.25 29.85 0.07 12.55 16 4 H 0.01 0.49 7.16 -2.38 -0.02 0.47 16 5 C -0.55 -31.38 8.90 25.60 0.23 -31.15 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 7 C 0.02 0.92 5.29 84.66 0.45 1.36 16 8 N -0.91 -52.83 11.29 21.45 0.24 -52.58 16 9 Si 0.98 43.33 29.54 68.60 2.03 45.35 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 O -0.35 -17.55 9.04 -56.51 -0.51 -18.06 16 14 C 0.49 21.97 6.34 70.29 0.45 22.42 16 15 O -0.54 -26.49 13.52 19.89 0.27 -26.22 16 16 C -0.12 -4.21 5.88 -20.07 -0.12 -4.33 16 17 C -0.06 -1.81 9.58 22.50 0.22 -1.60 16 18 C -0.09 -2.28 9.66 22.44 0.22 -2.06 16 19 C 0.01 0.19 5.88 -19.99 -0.12 0.07 16 20 C 0.25 6.25 7.77 137.40 1.07 7.32 16 21 N -0.32 -7.14 12.41 -52.39 -0.65 -7.79 16 22 N -0.47 -6.18 7.44 -50.73 -0.38 -6.55 16 23 H 0.46 2.08 8.96 -213.11 -1.91 0.17 16 24 C 0.29 3.97 8.22 138.24 1.14 5.11 16 25 C -0.08 -0.19 10.51 71.24 0.75 0.56 16 26 N -0.56 -12.31 10.81 -181.02 -1.96 -14.26 16 27 C -0.08 -2.11 9.67 22.44 0.22 -1.89 16 28 C -0.06 -1.92 9.60 22.50 0.22 -1.70 16 29 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 30 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.03 1.55 6.06 -2.39 -0.01 1.54 16 32 H 0.09 4.90 5.95 -2.39 -0.01 4.89 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.14 4.19 7.64 -2.91 -0.02 4.17 16 36 H 0.15 3.34 7.82 -2.91 -0.02 3.31 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 40 H 0.16 3.56 7.82 -2.91 -0.02 3.53 16 41 H 0.15 4.42 7.60 -2.91 -0.02 4.40 16 Total: -1.00 -75.24 352.60 3.76 -71.48 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.83 Total: 13.78 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 5.56 Total: -5.14 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.74 Total: -81.19 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.24 Total: -44.28 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -75.24 3.76 -71.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.853 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds