Wall clock time and date at job start Fri Apr 10 2020 23:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47238 * 2 1 4 4 C 1.50708 * 109.46804 * 120.00114 * 2 1 3 5 5 N 1.30713 * 125.52306 * 299.68639 * 4 2 1 6 6 N 1.40440 * 106.79076 * 179.86317 * 5 4 2 7 7 H 0.97001 * 126.82407 * 180.15796 * 6 5 4 8 8 C 1.34425 * 106.35554 * 0.40406 * 6 5 4 9 9 C 1.50700 * 125.96373 * 179.73711 * 8 6 5 10 10 O 1.45202 * 109.47204 * 0.02562 * 9 8 6 11 11 C 1.34797 * 117.00130 * 180.02562 * 10 9 8 12 12 O 1.21537 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.47284 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.39287 * 120.28848 * 357.16828 * 13 11 10 15 15 C 1.38196 * 120.08918 * 179.97438 * 14 13 11 16 16 C 1.38841 * 120.68494 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.57747 * 359.97438 * 16 15 14 18 18 C 1.40706 * 119.88962 * 359.74287 * 17 16 15 19 19 C 1.40860 * 120.33253 * 180.25627 * 18 17 16 20 20 H 1.08007 * 119.99960 * 214.92418 * 19 18 17 21 21 C 1.40296 * 119.99976 * 34.92536 * 19 18 17 22 22 N 1.30608 * 120.00202 * 9.90619 * 21 19 18 23 23 Si 1.86808 * 119.99774 * 189.90803 * 21 19 18 24 24 H 1.48498 * 109.47375 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47115 * 120.00038 * 23 21 19 26 26 H 1.48500 * 109.46916 * 240.00030 * 23 21 19 27 27 N 1.30839 * 108.07741 * 359.75674 * 8 6 5 28 28 H 1.09003 * 109.47080 * 60.00251 * 1 2 3 29 29 H 1.08999 * 109.47046 * 300.00518 * 1 2 3 30 30 H 1.09000 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47046 * 239.99481 * 2 1 3 32 32 H 1.08999 * 109.47526 * 59.99775 * 3 2 1 33 33 H 1.09002 * 109.47573 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46880 * 299.99871 * 3 2 1 35 35 H 1.09006 * 109.47452 * 120.02376 * 9 8 6 36 36 H 1.09001 * 109.47063 * 240.01883 * 9 8 6 37 37 H 1.08007 * 119.95638 * 359.94960 * 14 13 11 38 38 H 1.08006 * 119.66243 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.71331 * 179.97438 * 16 15 14 40 40 H 1.08003 * 120.05459 * 180.02562 * 17 16 15 41 41 H 0.96995 * 120.00259 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7887 -0.3559 2.4649 6 7 2.4399 -1.2869 3.2904 7 1 2.4479 -1.2982 4.2603 8 6 3.0545 -2.1560 2.4695 9 6 3.8895 -3.3362 2.8949 10 8 3.9342 -3.3999 4.3448 11 6 4.6463 -4.4055 4.8915 12 8 5.2146 -5.2068 4.1759 13 6 4.7357 -4.5332 6.3561 14 6 4.1362 -3.5851 7.1818 15 6 4.2222 -3.7093 8.5555 16 6 4.9037 -4.7741 9.1294 17 6 5.5062 -5.7265 8.3401 18 6 5.4287 -5.6271 6.9387 19 6 6.0375 -6.5998 6.1218 20 1 6.4802 -6.3132 5.1792 21 6 6.0688 -7.9410 6.5325 22 7 5.3718 -8.3231 7.5688 23 14 7.1077 -9.1802 5.5971 24 1 7.7958 -8.4996 4.4709 25 1 8.1183 -9.7696 6.5118 26 1 6.2342 -10.2567 5.0648 27 7 2.8016 -1.7983 1.2366 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 3.4481 -4.2532 2.5044 36 1 4.9011 -3.2251 2.5046 37 1 3.6037 -2.7516 6.7479 38 1 3.7550 -2.9699 9.1893 39 1 4.9615 -4.8555 10.2048 40 1 6.0339 -6.5516 8.7955 41 1 5.3931 -9.2504 7.8525 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795311302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:34 Heat of formation + Delta-G solvation = -9.141078 kcal Electronic energy + Delta-G solvation = -25020.747437 eV Core-core repulsion = 21287.202465 eV Total energy + Delta-G solvation = -3733.544972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.37322 -41.26578 -39.14564 -37.39674 -36.62158 -35.63257 -33.46867 -32.71262 -31.92312 -31.46728 -28.68446 -28.04189 -27.37461 -24.97064 -24.32119 -22.93713 -22.20153 -21.59742 -20.55751 -19.51644 -19.15132 -18.40419 -17.67390 -17.41988 -17.05161 -16.52082 -16.07867 -15.87433 -15.73129 -15.25498 -14.98863 -14.58330 -14.56621 -14.41548 -13.94823 -13.87676 -13.50823 -13.06196 -13.03370 -12.93384 -12.88438 -12.57260 -12.48672 -12.38117 -12.21797 -12.01501 -11.95289 -11.93372 -11.55641 -11.23433 -11.21146 -11.19728 -10.73077 -10.57859 -9.53711 -9.33642 -8.77224 -6.48619 0.28947 0.38374 0.97709 1.36029 1.41764 1.48428 1.50666 1.51026 1.65862 1.97685 2.18479 2.70333 2.90470 3.50053 3.60483 3.61984 4.03927 4.05334 4.12717 4.19299 4.36168 4.39290 4.42310 4.57939 4.79957 4.80929 4.88198 4.95139 4.98976 5.03647 5.12584 5.14948 5.24418 5.25248 5.33840 5.37192 5.43940 5.57221 5.76814 5.94847 5.98459 6.05114 6.26400 6.61804 6.76052 6.84701 6.90406 7.13692 8.20188 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.002899 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.787944 B = 9657.684850 C =10790.830358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C -0.137 4.137 4 C 0.227 3.773 5 N -0.323 5.323 6 N -0.461 5.461 7 H 0.455 0.545 8 C 0.293 3.707 9 C 0.150 3.850 10 O -0.365 6.365 11 C 0.515 3.485 12 O -0.533 6.533 13 C -0.272 4.272 14 C -0.037 4.037 15 C -0.238 4.238 16 C -0.084 4.084 17 C -0.173 4.173 18 C 0.121 3.879 19 C -0.456 4.456 20 H 0.094 0.906 21 C 0.034 3.966 22 N -0.811 5.811 23 Si 0.980 3.020 24 H -0.265 1.265 25 H -0.255 1.255 26 H -0.266 1.266 27 N -0.553 5.553 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 12.032 -8.456 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.056 4.056 5 N -0.152 5.152 6 N -0.179 5.179 7 H 0.303 0.697 8 C 0.014 3.986 9 C 0.073 3.927 10 O -0.284 6.284 11 C 0.367 3.633 12 O -0.425 6.425 13 C -0.275 4.275 14 C -0.055 4.055 15 C -0.257 4.257 16 C -0.102 4.102 17 C -0.192 4.192 18 C 0.117 3.883 19 C -0.484 4.484 20 H 0.112 0.888 21 C -0.183 4.183 22 N -0.436 5.436 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.179 1.179 26 H -0.191 1.191 27 N -0.285 5.285 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.229 12.056 -8.652 16.094 hybrid contribution 0.607 -1.191 0.543 1.443 sum -5.622 10.866 -8.109 14.677 Atomic orbital electron populations 1.21801 0.92080 1.02097 1.03577 1.19774 0.96997 0.95702 0.89984 1.21797 1.00802 0.93349 1.03574 1.24953 0.94248 0.91656 0.94729 1.77907 1.21044 1.13820 1.02463 1.47955 1.38221 1.20393 1.11379 0.69687 1.23688 0.94785 0.93305 0.86806 1.20959 0.99747 0.93219 0.78752 1.86370 1.68819 1.50967 1.22201 1.21219 0.75165 0.77251 0.89694 1.90744 1.45975 1.42242 1.63548 1.18972 1.15252 1.05771 0.87456 1.21139 0.94595 0.96108 0.93707 1.20844 1.08883 1.01639 0.94355 1.21252 0.95706 0.93900 0.99372 1.21275 1.04865 0.99963 0.93133 1.17812 0.87321 0.90237 0.92925 1.20407 1.30070 0.92415 1.05492 0.88827 1.26868 0.94775 1.01359 0.95261 1.69717 1.31345 1.20034 1.22486 0.85179 0.78605 0.77116 0.79043 1.18856 1.17946 1.19085 1.70256 1.21655 1.16740 1.19816 0.88772 0.92649 0.93360 0.87683 0.92636 0.93294 0.88794 0.87417 0.87077 0.85036 0.84897 0.85797 0.87756 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.18 71.98 0.66 -1.44 16 2 C 0.00 -0.07 3.39 -11.54 -0.04 -0.10 16 3 C -0.14 -2.07 9.17 71.98 0.66 -1.41 16 4 C 0.23 6.01 6.65 138.63 0.92 6.93 16 5 N -0.32 -8.94 12.80 -51.33 -0.66 -9.60 16 6 N -0.46 -12.44 7.28 -50.71 -0.37 -12.80 16 7 H 0.45 10.55 8.62 -213.10 -1.84 8.71 16 8 C 0.29 8.50 8.04 138.22 1.11 9.61 16 9 C 0.15 4.49 6.10 71.24 0.43 4.93 16 10 O -0.37 -12.64 9.00 -57.09 -0.51 -13.15 16 11 C 0.52 22.70 7.86 70.20 0.55 23.25 16 12 O -0.53 -26.17 13.30 19.71 0.26 -25.91 16 13 C -0.27 -12.68 5.92 -19.71 -0.12 -12.79 16 14 C -0.04 -1.46 9.60 22.51 0.22 -1.25 16 15 C -0.24 -8.92 10.03 22.40 0.22 -8.69 16 16 C -0.08 -3.42 10.01 22.26 0.22 -3.20 16 17 C -0.17 -8.39 8.62 22.72 0.20 -8.20 16 18 C 0.12 6.26 5.49 -21.10 -0.12 6.14 16 19 C -0.46 -24.46 7.78 23.41 0.18 -24.28 16 20 H 0.09 5.22 5.72 -2.91 -0.02 5.21 16 21 C 0.03 1.71 5.24 85.38 0.45 2.15 16 22 N -0.81 -40.59 11.23 21.88 0.25 -40.35 16 23 Si 0.98 38.67 29.57 68.60 2.03 40.70 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 26 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 27 N -0.55 -16.45 11.19 -179.72 -2.01 -18.46 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 36 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.13 4.23 7.60 -2.91 -0.02 4.21 16 38 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.10 5.25 6.68 -2.91 -0.02 5.23 16 41 H 0.29 13.16 8.29 -92.71 -0.77 12.39 16 Total: -1.00 -62.48 355.08 3.78 -58.70 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.76 Total: 29.23 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.56 Total: -8.35 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.79 Total: -81.21 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.25 Total: -39.06 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -62.48 3.78 -58.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795311302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.556 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds