Wall clock time and date at job start Fri Apr 10 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35952 * 117.00201 * 2 1 4 4 C 1.38725 * 120.02660 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.96951 * 179.97438 * 4 3 2 6 6 C 1.38485 * 120.02826 * 359.97438 * 5 4 3 7 7 F 1.35096 * 119.96867 * 180.02562 * 6 5 4 8 8 C 1.38432 * 120.05725 * 359.78933 * 6 5 4 9 9 C 1.38165 * 120.03323 * 0.46474 * 8 6 5 10 10 C 1.50696 * 120.01814 * 179.79171 * 9 8 6 11 11 N 1.46497 * 109.47042 * 259.72279 * 10 9 8 12 12 C 1.36933 * 120.00229 * 269.99706 * 11 10 9 13 13 H 1.07998 * 120.00156 * 140.01196 * 12 11 10 14 14 C 1.38817 * 120.00029 * 320.00820 * 12 11 10 15 15 N 1.31620 * 119.99921 * 344.82359 * 14 12 11 16 16 Si 1.86801 * 119.99986 * 164.81635 * 14 12 11 17 17 H 1.48499 * 109.47015 * 60.00243 * 16 14 12 18 18 H 1.48503 * 109.47087 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47261 * 300.00503 * 16 14 12 20 20 C 1.46510 * 120.00058 * 90.00251 * 11 10 9 21 21 C 1.50693 * 109.47547 * 91.10993 * 20 11 10 22 22 C 1.38234 * 120.00318 * 268.62347 * 21 20 11 23 23 C 1.38235 * 120.00249 * 180.32294 * 22 21 20 24 24 C 1.38237 * 119.99729 * 359.94995 * 23 22 21 25 25 C 1.38237 * 120.00382 * 0.02562 * 24 23 22 26 26 C 1.38237 * 119.99606 * 88.89635 * 21 20 11 27 27 H 1.08999 * 109.46590 * 59.99473 * 1 2 3 28 28 H 1.08992 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46687 * 300.00224 * 1 2 3 30 30 H 1.07999 * 120.02065 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.98986 * 180.02562 * 5 4 3 32 32 H 1.08008 * 119.97813 * 180.23271 * 8 6 5 33 33 H 1.09001 * 109.47264 * 139.72168 * 10 9 8 34 34 H 1.09005 * 109.47016 * 19.72432 * 10 9 8 35 35 H 0.97001 * 119.99758 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.46832 * 331.11087 * 20 11 10 37 37 H 1.08997 * 109.46805 * 211.11426 * 20 11 10 38 38 H 1.08001 * 119.99854 * 0.27486 * 22 21 20 39 39 H 1.07996 * 119.99937 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.99769 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.00507 * 179.97438 * 25 24 23 42 42 H 1.08005 * 120.00419 * 359.72162 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9160 4.8807 0.0027 8 6 4.0572 2.5163 0.0060 9 6 3.4312 1.2846 0.0002 10 6 4.2529 0.0214 0.0002 11 7 4.3182 -0.5187 -1.3600 12 6 3.3698 -1.4080 -1.7898 13 1 2.9811 -1.3390 -2.7951 14 6 2.9080 -2.3982 -0.9336 15 7 3.5728 -2.6790 0.1672 16 14 1.3430 -3.3321 -1.3434 17 1 1.5094 -4.0308 -2.6431 18 1 1.0673 -4.3283 -0.2771 19 1 0.2076 -2.3793 -1.4355 20 6 5.3983 -0.1075 -2.2604 21 6 6.5575 -1.0605 -2.1226 22 6 7.5646 -0.7970 -1.2131 23 6 8.6313 -1.6678 -1.0914 24 6 8.6903 -2.8027 -1.8785 25 6 7.6829 -3.0665 -2.7876 26 6 6.6165 -2.1954 -2.9096 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 0.2128 2.3195 0.0014 31 1 1.3322 4.5115 0.0019 32 1 5.1357 2.5738 0.0102 33 1 3.7911 -0.7125 0.6608 34 1 5.2605 0.2434 0.3518 35 1 3.2499 -3.3707 0.7657 36 1 5.7236 0.9000 -2.0012 37 1 5.0382 -0.1198 -3.2891 38 1 7.5185 0.0897 -0.5982 39 1 9.4184 -1.4616 -0.3812 40 1 9.5235 -3.4832 -1.7831 41 1 7.7292 -3.9530 -3.4028 42 1 5.8296 -2.4014 -3.6201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064932607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:08:50 Heat of formation + Delta-G solvation = -4.465683 kcal Electronic energy + Delta-G solvation = -26617.824651 eV Core-core repulsion = 22864.562458 eV Total energy + Delta-G solvation = -3753.262193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.40045 -39.57204 -38.46219 -36.66814 -35.45792 -31.88243 -31.61014 -30.15220 -29.67216 -29.08727 -26.81450 -25.76003 -25.41947 -22.40450 -21.84355 -21.69710 -20.87742 -19.89724 -17.52768 -16.85967 -16.48453 -16.29307 -15.92112 -15.30827 -14.91466 -14.81766 -14.38661 -14.34799 -14.19336 -14.01809 -13.74126 -13.32182 -12.96100 -12.70702 -12.59777 -12.45898 -12.11714 -11.86016 -11.76402 -11.37160 -11.32946 -10.89273 -10.78202 -10.59574 -10.40298 -10.36361 -10.20313 -10.09728 -9.96976 -9.91168 -8.53054 -8.45031 -8.17257 -7.95005 -7.41034 -6.57162 -5.75606 -3.35981 1.66662 1.78303 2.14124 2.16879 3.31814 3.39708 3.39830 3.95659 4.10834 4.46967 4.59817 4.76465 5.12293 5.20301 5.43856 5.44894 5.53731 5.55850 5.57822 5.63314 5.70109 5.76087 5.86221 5.91116 5.93747 6.09173 6.15450 6.26292 6.36511 6.38646 6.52296 6.56410 6.62259 6.78377 6.80014 6.83037 7.06070 7.16859 7.21690 7.28633 7.52545 7.69174 7.77828 7.83608 8.07623 8.54813 9.17675 9.79354 10.36525 11.25321 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.006170 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.063105 B = 4536.818081 C = 6673.747768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.262 6.262 3 C 0.145 3.855 4 C -0.197 4.197 5 C -0.133 4.133 6 C 0.044 3.956 7 F -0.153 7.153 8 C -0.122 4.122 9 C -0.080 4.080 10 C 0.182 3.818 11 N -0.559 5.559 12 C -0.249 4.249 13 H 0.055 0.945 14 C 0.040 3.960 15 N -0.879 5.879 16 Si 0.891 3.109 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.277 1.277 20 C 0.175 3.825 21 C -0.069 4.069 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.095 4.095 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.034 0.966 35 H 0.254 0.746 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 6.308 -0.529 6.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.173 6.173 3 C 0.097 3.903 4 C -0.216 4.216 5 C -0.153 4.153 6 C 0.025 3.975 7 F -0.132 7.132 8 C -0.141 4.141 9 C -0.084 4.084 10 C 0.056 3.944 11 N -0.277 5.277 12 C -0.378 4.378 13 H 0.072 0.928 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.722 3.278 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.203 1.203 20 C 0.049 3.951 21 C -0.072 4.072 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.161 4.161 25 C -0.144 4.144 26 C -0.114 4.114 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.104 5.990 -0.401 6.004 hybrid contribution -1.091 -0.245 -0.068 1.120 sum -0.987 5.745 -0.468 5.848 Atomic orbital electron populations 1.23052 0.80797 1.03447 0.99952 1.86563 1.18863 1.24809 1.87094 1.18937 0.92130 0.84404 0.94795 1.21002 0.99758 0.91764 1.09087 1.20625 0.92509 0.98085 1.04045 1.17544 0.90870 0.80230 1.08845 1.91416 1.83520 1.43566 1.94735 1.20858 0.99986 0.90319 1.02976 1.20514 0.92017 0.97406 0.98479 1.20003 0.94919 0.89911 0.89577 1.43724 1.24674 1.48474 1.10783 1.18802 1.14051 1.06053 0.98927 0.92770 1.25067 0.97888 0.95659 0.97583 1.69827 1.37612 1.31320 1.13291 0.86645 0.84651 0.79250 0.77275 1.21341 1.21889 1.20327 1.20072 0.86394 0.93223 0.95374 1.20939 0.94661 0.97478 0.94088 1.20903 0.94371 0.99546 0.98664 1.20934 0.98565 0.95451 0.99575 1.20862 0.99203 0.97860 0.98149 1.21009 0.95153 0.99051 0.99155 1.20941 0.96732 0.94154 0.99585 0.93368 0.88888 0.93746 0.85552 0.85818 0.85227 0.86576 0.94800 0.93545 0.93782 0.93024 0.87319 0.87411 0.87512 0.87366 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.69 101.05 0.98 1.35 16 2 O -0.26 -5.35 7.58 -19.59 -0.15 -5.50 16 3 C 0.14 2.79 6.66 -39.24 -0.26 2.53 16 4 C -0.20 -3.20 9.04 -39.44 -0.36 -3.55 16 5 C -0.13 -2.08 10.02 -39.53 -0.40 -2.47 16 6 C 0.04 0.75 7.30 -39.42 -0.29 0.46 16 7 F -0.15 -2.53 17.27 2.25 0.04 -2.49 16 8 C -0.12 -2.15 9.64 -39.54 -0.38 -2.53 16 9 C -0.08 -1.60 5.47 -104.49 -0.57 -2.17 16 10 C 0.18 4.04 5.09 -5.20 -0.03 4.01 16 11 N -0.56 -12.87 2.38 -175.98 -0.42 -13.29 16 12 C -0.25 -6.26 8.59 -15.06 -0.13 -6.39 16 13 H 0.05 1.40 7.87 -52.49 -0.41 0.99 16 14 C 0.04 1.01 4.04 -17.43 -0.07 0.94 16 15 N -0.88 -23.79 11.26 55.49 0.62 -23.17 16 16 Si 0.89 20.46 29.18 -169.99 -4.96 15.50 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -5.94 5.80 56.52 0.33 -5.61 16 20 C 0.18 3.56 5.79 -5.19 -0.03 3.53 16 21 C -0.07 -1.37 5.46 -104.63 -0.57 -1.94 16 22 C -0.12 -2.15 9.70 -39.58 -0.38 -2.53 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.14 -2.39 10.05 -39.58 -0.40 -2.78 16 25 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 26 C -0.10 -1.87 9.71 -39.58 -0.38 -2.26 16 27 H 0.05 0.69 7.66 -51.93 -0.40 0.30 16 28 H 0.09 1.49 6.68 -51.93 -0.35 1.14 16 29 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.13 1.72 6.30 -52.49 -0.33 1.39 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 2.10 8.04 -52.48 -0.42 1.68 16 33 H 0.12 2.97 5.15 -51.93 -0.27 2.70 16 34 H 0.03 0.72 7.93 -51.93 -0.41 0.31 16 35 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.04 0.82 8.00 -51.93 -0.42 0.41 16 37 H 0.05 1.04 8.00 -51.93 -0.42 0.62 16 38 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -27.76 353.97 -9.16 -36.92 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.56 Total: 5.70 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -4.06 Total: -19.00 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.21 Total: -36.46 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.15 Total: -5.50 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.96 Total: 15.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.76 -9.16 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064932607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.455 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds