Wall clock time and date at job start Fri Apr 10 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47349 * 2 1 4 4 C 1.46500 * 120.00043 * 72.28750 * 3 2 1 5 5 C 1.50701 * 109.46673 * 89.99789 * 4 3 2 6 6 H 1.07995 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99518 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00195 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99653 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46828 * 90.00646 * 9 7 5 11 11 H 1.48500 * 109.47015 * 210.00254 * 9 7 5 12 12 H 1.48495 * 109.47279 * 330.00331 * 9 7 5 13 13 C 1.34778 * 120.00123 * 252.29144 * 3 2 1 14 14 O 1.21587 * 120.00233 * 181.66809 * 13 3 2 15 15 C 1.47545 * 119.99733 * 1.66666 * 13 3 2 16 16 C 1.39664 * 120.16347 * 26.66762 * 15 13 3 17 17 C 1.38354 * 119.84435 * 179.69867 * 16 15 13 18 18 N 1.40379 * 119.91863 * 180.29021 * 17 16 15 19 19 C 1.37069 * 126.46860 * 180.29643 * 18 17 16 20 20 C 1.34678 * 106.83756 * 179.97438 * 19 18 17 21 21 N 1.34116 * 108.18506 * 0.02562 * 20 19 18 22 22 C 1.30535 * 109.34235 * 359.74223 * 21 20 19 23 23 C 1.39076 * 120.16297 * 0.59381 * 17 16 15 24 24 C 1.37979 * 120.32749 * 359.67365 * 23 17 16 25 25 C 1.38711 * 120.15938 * 0.02562 * 24 23 17 26 26 O 1.35692 * 120.08796 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46651 * 60.00240 * 1 2 3 28 28 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47052 * 300.00415 * 1 2 3 30 30 H 1.09007 * 109.47103 * 239.99988 * 2 1 3 31 31 H 1.08992 * 109.47103 * 120.00095 * 2 1 3 32 32 H 1.08990 * 109.47186 * 210.00219 * 4 3 2 33 33 H 1.09003 * 109.47052 * 330.00287 * 4 3 2 34 34 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 35 35 H 1.08001 * 120.07509 * 359.96513 * 16 15 13 36 36 H 1.07999 * 126.58165 * 359.96442 * 19 18 17 37 37 H 1.08001 * 125.90481 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.71492 * 180.24203 * 22 21 20 39 39 H 1.07997 * 119.83222 * 179.70506 * 23 17 16 40 40 H 1.08005 * 119.92522 * 180.02562 * 24 23 17 41 41 H 0.96699 * 114.00425 * 270.02553 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8987 2.2005 1.2086 5 6 3.1337 2.0301 2.0552 6 1 3.9284 1.3772 1.7257 7 6 3.2495 2.7086 3.2499 8 7 2.2819 3.5040 3.6508 9 14 4.7806 2.4979 4.2991 10 1 5.7910 3.5143 3.9097 11 1 4.4277 2.6739 5.7307 12 1 5.3403 1.1384 4.0907 13 6 2.5778 1.8982 -1.1119 14 8 3.0106 3.0344 -1.1028 15 6 2.6650 1.0854 -2.3401 16 6 1.7419 0.0633 -2.5723 17 6 1.8260 -0.6908 -3.7292 18 7 0.8953 -1.7144 -3.9670 19 6 0.8564 -2.5428 -5.0584 20 6 -0.1900 -3.3720 -4.8816 21 7 -0.7774 -3.0622 -3.7164 22 6 -0.1334 -2.0743 -3.1568 23 6 2.8342 -0.4413 -4.6542 24 6 3.7531 0.5631 -4.4293 25 6 3.6777 1.3314 -3.2769 26 8 4.5825 2.3184 -3.0568 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7921 3.2483 0.9281 33 1 1.0230 1.8853 1.7759 34 1 2.3632 3.9810 4.4915 35 1 0.9616 -0.1351 -1.8524 36 1 1.5347 -2.5325 -5.8988 37 1 -0.5021 -4.1516 -5.5608 38 1 -0.3790 -1.6178 -2.2093 39 1 2.8977 -1.0363 -5.5533 40 1 4.5332 0.7515 -5.1522 41 1 5.3702 2.0299 -2.5759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602077708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:13 Heat of formation + Delta-G solvation = 52.760228 kcal Electronic energy + Delta-G solvation = -26327.038250 eV Core-core repulsion = 22596.177520 eV Total energy + Delta-G solvation = -3730.860730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.56637 -40.52062 -38.38006 -37.22455 -35.51027 -33.66724 -33.06994 -31.68013 -30.33658 -29.79722 -28.65262 -27.28961 -24.38406 -23.81890 -23.17010 -22.57240 -21.13501 -20.95976 -19.66882 -18.47564 -17.82645 -16.88690 -16.46260 -16.12133 -15.79820 -15.58132 -15.05811 -14.97615 -14.57917 -14.45627 -14.16699 -13.95658 -13.74841 -13.25911 -13.14822 -13.00719 -12.60317 -12.37318 -12.15204 -11.99884 -11.72608 -11.26583 -10.95872 -10.89251 -10.66203 -10.64812 -10.58892 -10.31778 -10.19068 -9.71474 -9.30464 -8.98495 -8.92478 -8.48521 -8.36878 -7.77735 -6.09685 -4.14717 0.47146 0.71834 1.94615 2.38169 2.88034 3.06655 3.27472 3.33650 3.34875 3.61822 3.79149 4.06124 4.28207 4.37405 4.40445 4.43231 4.58338 4.81373 4.85608 5.08306 5.13416 5.24881 5.28160 5.32281 5.40513 5.47590 5.55779 5.56747 5.68723 5.79596 6.03291 6.11460 6.14538 6.19615 6.38052 6.46962 6.95411 6.98358 7.35472 7.42076 7.64110 7.75331 7.85695 8.16095 8.25733 8.80532 8.95553 9.50337 10.98468 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003955 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.947968 B = 7077.655941 C = 8205.047725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.542 3.458 14 O -0.510 6.510 15 C -0.121 4.121 16 C -0.114 4.114 17 C 0.106 3.894 18 N -0.405 5.405 19 C -0.056 4.056 20 C -0.024 4.024 21 N -0.485 5.485 22 C 0.187 3.813 23 C -0.100 4.100 24 C -0.131 4.131 25 C 0.160 3.840 26 O -0.473 6.473 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.207 0.793 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -12.534 -16.969 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.051 4.051 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.327 3.673 14 O -0.386 6.386 15 C -0.125 4.125 16 C -0.133 4.133 17 C 0.014 3.986 18 N -0.083 5.083 19 C -0.186 4.186 20 C -0.171 4.171 21 N -0.201 5.201 22 C -0.094 4.094 23 C -0.120 4.120 24 C -0.150 4.150 25 C 0.112 3.888 26 O -0.283 6.283 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.186 0.814 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.224 0.776 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.385 -11.776 -16.725 20.502 hybrid contribution 1.863 -0.024 0.565 1.947 sum 0.478 -11.800 -16.160 20.015 Atomic orbital electron populations 1.22337 0.96340 1.02021 1.03348 1.22269 0.94087 0.84999 1.03774 1.48178 1.57647 1.12822 1.13168 1.19323 0.97224 0.91173 0.79460 1.21386 1.03536 1.27418 1.04325 0.92488 1.24924 0.96595 0.94881 0.97593 1.69921 1.32315 1.28608 1.22361 0.86500 0.83097 0.78491 0.79337 1.20518 1.21103 1.19959 1.17834 0.80180 0.86775 0.82494 1.90832 1.46233 1.17920 1.83619 1.20658 0.97709 0.97018 0.97151 1.21945 1.01280 0.94270 0.95809 1.17683 0.92451 0.91913 0.96588 1.43214 1.22688 1.24807 1.17622 1.22752 1.04761 0.96887 0.94233 1.22364 0.95691 1.02397 0.96642 1.70353 1.27886 1.13275 1.08632 1.25364 0.87780 0.97198 0.99041 1.20783 0.93780 0.98669 0.98748 1.21265 1.00542 0.94925 0.98231 1.18526 0.90856 0.87479 0.91904 1.84816 1.32378 1.32663 1.78493 0.92565 0.91492 0.90455 0.89348 0.90155 0.93700 0.94607 0.92636 0.81383 0.80556 0.80893 0.77617 0.84618 0.83824 0.74618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.63 37.16 0.32 -1.98 16 2 C 0.07 1.10 5.63 -4.04 -0.02 1.08 16 3 N -0.59 -11.92 2.51 -176.29 -0.44 -12.36 16 4 C 0.25 6.23 5.08 -5.19 -0.03 6.20 16 5 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.54 11.14 7.40 -12.46 -0.09 11.05 16 14 O -0.51 -12.72 15.23 -14.59 -0.22 -12.94 16 15 C -0.12 -1.89 5.58 -104.86 -0.58 -2.48 16 16 C -0.11 -1.45 6.87 -39.01 -0.27 -1.72 16 17 C 0.11 1.17 6.63 -83.59 -0.55 0.62 16 18 N -0.40 -4.34 2.99 -62.12 -0.19 -4.52 16 19 C -0.06 -0.51 10.85 -16.47 -0.18 -0.69 16 20 C -0.02 -0.25 11.86 -17.81 -0.21 -0.46 16 21 N -0.48 -6.05 11.25 -14.48 -0.16 -6.21 16 22 C 0.19 2.12 11.91 -89.65 -1.07 1.05 16 23 C -0.10 -0.93 9.46 -39.37 -0.37 -1.31 16 24 C -0.13 -1.33 9.97 -39.50 -0.39 -1.72 16 25 C 0.16 2.21 6.69 -38.70 -0.26 1.95 16 26 O -0.47 -6.99 11.92 -38.66 -0.46 -7.45 16 27 H 0.06 0.67 7.11 -51.93 -0.37 0.30 16 28 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 29 H 0.08 1.12 7.26 -51.93 -0.38 0.74 16 30 H 0.09 1.16 3.84 -53.52 -0.21 0.96 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.04 1.29 7.44 -51.93 -0.39 0.90 16 33 H 0.04 0.91 7.14 -51.93 -0.37 0.54 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.17 2.01 1.57 -52.49 -0.08 1.93 16 36 H 0.18 1.00 7.14 -52.49 -0.37 0.62 16 37 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.21 1.89 6.21 -52.49 -0.33 1.57 16 39 H 0.14 0.87 6.79 -52.49 -0.36 0.51 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.40 4.26 9.06 45.56 0.41 4.68 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -35.60 341.16 -8.40 -44.00 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.65 Total: 4.87 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -4.13 Total: -1.62 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.05 Total: -48.38 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.68 Total: -20.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.60 -8.40 -44.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602077708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.761 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds