Wall clock time and date at job start Fri Apr 10 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47349 * 2 1 4 4 C 1.46500 * 120.00043 * 72.28750 * 3 2 1 5 5 C 1.50701 * 109.46673 * 89.99789 * 4 3 2 6 6 H 1.07995 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99518 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00195 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99653 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46828 * 90.00646 * 9 7 5 11 11 H 1.48500 * 109.47015 * 210.00254 * 9 7 5 12 12 H 1.48495 * 109.47279 * 330.00331 * 9 7 5 13 13 C 1.34778 * 120.00123 * 252.29144 * 3 2 1 14 14 O 1.21587 * 120.00233 * 181.66809 * 13 3 2 15 15 C 1.47545 * 119.99733 * 1.66666 * 13 3 2 16 16 C 1.39664 * 120.16347 * 26.66762 * 15 13 3 17 17 C 1.38354 * 119.84435 * 179.69867 * 16 15 13 18 18 N 1.40379 * 119.91863 * 180.29021 * 17 16 15 19 19 C 1.37069 * 126.46860 * 180.29643 * 18 17 16 20 20 C 1.34678 * 106.83756 * 179.97438 * 19 18 17 21 21 N 1.34116 * 108.18506 * 0.02562 * 20 19 18 22 22 C 1.30535 * 109.34235 * 359.74223 * 21 20 19 23 23 C 1.39076 * 120.16297 * 0.59381 * 17 16 15 24 24 C 1.37979 * 120.32749 * 359.67365 * 23 17 16 25 25 C 1.38711 * 120.15938 * 0.02562 * 24 23 17 26 26 O 1.35692 * 120.08796 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46651 * 60.00240 * 1 2 3 28 28 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47052 * 300.00415 * 1 2 3 30 30 H 1.09007 * 109.47103 * 239.99988 * 2 1 3 31 31 H 1.08992 * 109.47103 * 120.00095 * 2 1 3 32 32 H 1.08990 * 109.47186 * 210.00219 * 4 3 2 33 33 H 1.09003 * 109.47052 * 330.00287 * 4 3 2 34 34 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 35 35 H 1.08001 * 120.07509 * 359.96513 * 16 15 13 36 36 H 1.07999 * 126.58165 * 359.96442 * 19 18 17 37 37 H 1.08001 * 125.90481 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.71492 * 180.24203 * 22 21 20 39 39 H 1.07997 * 119.83222 * 179.70506 * 23 17 16 40 40 H 1.08005 * 119.92522 * 180.02562 * 24 23 17 41 41 H 0.96699 * 114.00425 * 270.02553 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8987 2.2005 1.2086 5 6 3.1337 2.0301 2.0552 6 1 3.9284 1.3772 1.7257 7 6 3.2495 2.7086 3.2499 8 7 2.2819 3.5040 3.6508 9 14 4.7806 2.4979 4.2991 10 1 5.7910 3.5143 3.9097 11 1 4.4277 2.6739 5.7307 12 1 5.3403 1.1384 4.0907 13 6 2.5778 1.8982 -1.1119 14 8 3.0106 3.0344 -1.1028 15 6 2.6650 1.0854 -2.3401 16 6 1.7419 0.0633 -2.5723 17 6 1.8260 -0.6908 -3.7292 18 7 0.8953 -1.7144 -3.9670 19 6 0.8564 -2.5428 -5.0584 20 6 -0.1900 -3.3720 -4.8816 21 7 -0.7774 -3.0622 -3.7164 22 6 -0.1334 -2.0743 -3.1568 23 6 2.8342 -0.4413 -4.6542 24 6 3.7531 0.5631 -4.4293 25 6 3.6777 1.3314 -3.2769 26 8 4.5825 2.3184 -3.0568 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7921 3.2483 0.9281 33 1 1.0230 1.8853 1.7759 34 1 2.3632 3.9810 4.4915 35 1 0.9616 -0.1351 -1.8524 36 1 1.5347 -2.5325 -5.8988 37 1 -0.5021 -4.1516 -5.5608 38 1 -0.3790 -1.6178 -2.2093 39 1 2.8977 -1.0363 -5.5533 40 1 4.5332 0.7515 -5.1522 41 1 5.3702 2.0299 -2.5759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602077708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:12 Heat of formation + Delta-G solvation = 29.845441 kcal Electronic energy + Delta-G solvation = -26328.031909 eV Core-core repulsion = 22596.177520 eV Total energy + Delta-G solvation = -3731.854390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.34522 -41.70840 -39.71372 -38.28660 -37.02749 -35.10121 -34.48366 -32.95705 -31.63996 -30.65007 -29.54707 -29.11734 -25.79004 -25.02894 -24.38655 -23.80988 -22.13369 -21.77364 -20.84418 -19.42498 -19.07962 -18.57734 -18.08139 -17.34578 -16.91782 -16.60866 -16.45130 -16.10632 -15.98148 -15.70170 -15.13401 -15.08376 -14.76008 -14.41333 -14.32027 -14.11624 -13.88578 -13.58234 -13.47349 -13.33371 -13.13857 -13.01162 -12.69379 -12.53744 -12.23221 -11.98265 -11.73394 -11.72414 -11.52003 -11.10009 -10.71611 -10.66157 -10.15863 -9.68589 -9.53136 -9.21227 -8.24189 -6.38940 -0.45670 -0.22184 1.14492 1.35801 1.38571 1.48165 1.58737 1.86719 2.14013 2.17923 2.39475 2.53997 3.05702 3.11408 3.29605 3.51239 3.74314 3.79831 3.87015 3.91613 4.03565 4.21208 4.31917 4.44202 4.53752 4.55329 4.60504 4.75296 4.81218 4.83806 4.88195 4.98018 5.10142 5.20868 5.30656 5.33033 5.38935 5.52374 5.77756 5.78402 6.03157 6.18191 6.62475 6.70400 6.72475 7.00905 7.23015 7.38151 8.83164 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003955 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.947968 B = 7077.655941 C = 8205.047725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 N -0.592 5.592 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.262 1.262 13 C 0.535 3.465 14 O -0.571 6.571 15 C -0.150 4.150 16 C -0.114 4.114 17 C 0.110 3.890 18 N -0.409 5.409 19 C -0.045 4.045 20 C -0.044 4.044 21 N -0.515 5.515 22 C 0.170 3.830 23 C -0.077 4.077 24 C -0.114 4.114 25 C 0.145 3.855 26 O -0.496 6.496 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.071 0.929 32 H -0.003 1.003 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.171 0.829 36 H 0.217 0.783 37 H 0.195 0.805 38 H 0.217 0.783 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 -15.439 -19.595 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.054 4.054 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.186 1.186 13 C 0.324 3.676 14 O -0.452 6.452 15 C -0.154 4.154 16 C -0.134 4.134 17 C 0.018 3.982 18 N -0.088 5.088 19 C -0.175 4.175 20 C -0.190 4.190 21 N -0.233 5.233 22 C -0.111 4.111 23 C -0.096 4.096 24 C -0.133 4.133 25 C 0.098 3.902 26 O -0.309 6.309 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.188 0.812 36 H 0.234 0.766 37 H 0.212 0.788 38 H 0.234 0.766 39 H 0.198 0.802 40 H 0.196 0.804 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.385 -14.749 -19.369 24.348 hybrid contribution 1.491 0.806 1.249 2.106 sum 1.106 -13.943 -18.119 22.890 Atomic orbital electron populations 1.22294 0.94220 1.04349 1.02522 1.22601 0.95840 0.82191 1.04758 1.48148 1.57924 1.14330 1.11825 1.18750 0.96364 0.89556 0.81127 1.21666 1.04085 1.27465 1.04938 0.92858 1.25847 0.99852 0.94374 0.98950 1.70044 1.34339 1.29393 1.22940 0.85416 0.78860 0.78856 0.77688 1.20561 1.20023 1.18570 1.18622 0.78570 0.86584 0.83803 1.90774 1.48844 1.20622 1.84924 1.20240 1.00691 0.98634 0.95846 1.21795 1.00691 0.93812 0.97056 1.17707 0.92859 0.91526 0.96149 1.43280 1.22449 1.24890 1.18170 1.23397 1.04599 0.95303 0.94196 1.22867 0.96193 1.03463 0.96430 1.70334 1.28927 1.14033 1.10003 1.25642 0.88228 0.97441 0.99777 1.21281 0.91567 0.97656 0.99138 1.21540 1.01217 0.93681 0.96831 1.18877 0.90408 0.88009 0.92908 1.84770 1.33211 1.34095 1.78794 0.91877 0.87503 0.92813 0.86515 0.91023 0.98480 0.95323 0.92369 0.81203 0.76638 0.78791 0.76640 0.80225 0.80413 0.73314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 8.63 71.98 0.62 -3.81 16 2 C 0.07 2.09 5.63 86.38 0.49 2.58 16 3 N -0.59 -25.43 2.51 -829.91 -2.08 -27.51 16 4 C 0.26 14.24 5.08 85.63 0.43 14.67 16 5 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 9 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 C 0.54 23.29 7.40 86.70 0.64 23.93 16 14 O -0.57 -30.66 15.23 15.02 0.23 -30.43 16 15 C -0.15 -4.70 5.58 -20.02 -0.11 -4.81 16 16 C -0.11 -2.74 6.87 22.64 0.16 -2.58 16 17 C 0.11 2.04 6.63 38.00 0.25 2.29 16 18 N -0.41 -7.22 2.99 -350.45 -1.05 -8.27 16 19 C -0.05 -0.61 10.85 83.06 0.90 0.29 16 20 C -0.04 -0.75 11.86 83.53 0.99 0.24 16 21 N -0.52 -11.73 11.25 -199.72 -2.25 -13.98 16 22 C 0.17 3.43 11.91 180.01 2.14 5.58 16 23 C -0.08 -1.03 9.46 22.41 0.21 -0.82 16 24 C -0.11 -1.86 9.97 22.32 0.22 -1.64 16 25 C 0.14 3.86 6.69 22.84 0.15 4.02 16 26 O -0.50 -14.84 11.92 -71.11 -0.85 -15.69 16 27 H 0.06 1.50 7.11 -2.39 -0.02 1.48 16 28 H 0.11 1.82 7.80 -2.39 -0.02 1.80 16 29 H 0.05 1.61 7.26 -2.39 -0.02 1.59 16 30 H 0.12 2.98 3.84 -3.89 -0.01 2.97 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.00 -0.18 7.44 -2.39 -0.02 -0.20 16 33 H 0.03 1.56 7.14 -2.39 -0.02 1.55 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.17 3.87 1.57 -2.91 0.00 3.86 16 36 H 0.22 0.96 7.14 -2.91 -0.02 0.94 16 37 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.22 3.54 6.21 -2.91 -0.02 3.53 16 39 H 0.18 0.90 6.79 -2.91 -0.02 0.88 16 40 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.41 9.08 9.06 -74.06 -0.67 8.41 16 Total: -1.00 -83.69 341.16 4.54 -79.15 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.42 Total: 15.97 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 7.80 Total: 9.88 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -5.09 Total: -105.60 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.62 Total: -46.11 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -83.69 4.54 -79.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602077708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.994 kcal (2) G-P(sol) polarization free energy of solvation -83.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds