Wall clock time and date at job start Fri Apr 10 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30536 * 1 3 3 Si 1.86805 * 119.99677 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00251 * 3 2 1 5 5 H 1.48494 * 109.47194 * 30.00811 * 3 2 1 6 6 H 1.48499 * 109.46735 * 150.00403 * 3 2 1 7 7 C 1.40316 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.41834 * 119.99907 * 0.27308 * 7 2 1 10 10 O 1.21815 * 119.99832 * 359.72402 * 9 7 2 11 11 C 1.47534 * 120.00110 * 179.72629 * 9 7 2 12 12 C 1.39842 * 120.20243 * 359.97438 * 11 9 7 13 13 C 1.37707 * 119.89760 * 179.97438 * 12 11 9 14 14 C 1.38687 * 120.31880 * 359.97438 * 13 12 11 15 15 C 1.38082 * 120.42130 * 0.02562 * 14 13 12 16 16 C 1.38672 * 120.09125 * 359.70370 * 15 14 13 17 17 O 1.35637 * 120.16304 * 180.29631 * 16 15 14 18 18 C 1.42905 * 116.99775 * 5.47941 * 17 16 15 19 19 C 1.53115 * 109.52184 * 274.80196 * 18 17 16 20 20 C 1.53030 * 109.27871 * 182.44234 * 19 18 17 21 21 N 1.46845 * 109.52615 * 59.18289 * 20 19 18 22 22 C 1.46893 * 111.00484 * 174.16172 * 21 20 19 23 23 C 1.53007 * 117.49828 * 12.82645 * 22 21 20 24 24 C 1.52991 * 60.00140 * 252.51267 * 23 22 21 25 25 C 1.46845 * 111.19403 * 298.26022 * 21 20 19 26 26 C 1.53037 * 109.52774 * 61.74085 * 25 21 20 27 27 H 0.97008 * 120.00369 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.05499 * 359.95608 * 12 11 9 29 29 H 1.08001 * 119.83871 * 179.97438 * 13 12 11 30 30 H 1.08006 * 119.78556 * 180.02562 * 14 13 12 31 31 H 1.08002 * 119.95475 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.52466 * 34.99569 * 18 17 16 33 33 H 1.08999 * 109.50642 * 302.38635 * 19 18 17 34 34 H 1.09009 * 109.50207 * 62.50079 * 19 18 17 35 35 H 1.09001 * 109.46576 * 299.16012 * 20 19 18 36 36 H 1.09007 * 109.45507 * 179.19457 * 20 19 18 37 37 H 1.09001 * 115.55261 * 158.54027 * 22 21 20 38 38 H 1.08995 * 117.49787 * 0.02562 * 23 22 21 39 39 H 1.09004 * 117.49736 * 145.02073 * 23 22 21 40 40 H 1.09003 * 117.50155 * 252.51185 * 24 23 22 41 41 H 1.09007 * 117.52241 * 107.48237 * 24 23 22 42 42 H 1.09002 * 109.46592 * 301.72104 * 25 21 20 43 43 H 1.09004 * 109.45136 * 181.75353 * 25 21 20 44 44 H 1.09002 * 109.50586 * 180.88132 * 26 25 21 45 45 H 1.08996 * 109.53375 * 60.77718 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4867 2.0466 -1.4001 5 1 1.4368 2.6526 0.7002 6 1 3.5369 1.4402 0.7000 7 6 2.0070 -1.2151 -0.0005 8 1 3.0870 -1.2151 -0.0010 9 6 1.2979 -2.4435 -0.0069 10 8 0.0798 -2.4435 -0.0069 11 6 2.0356 -3.7211 -0.0136 12 6 3.4340 -3.7260 -0.0142 13 6 4.1162 -4.9222 -0.0199 14 6 3.4231 -6.1234 -0.0246 15 6 2.0424 -6.1340 -0.0241 16 6 1.3380 -4.9395 -0.0127 17 8 -0.0184 -4.9482 -0.0061 18 6 -0.6584 -6.2207 0.1102 19 6 -0.7857 -6.8580 -1.2762 20 6 -1.5257 -8.1917 -1.1532 21 7 -2.8565 -7.9632 -0.5759 22 6 -3.6478 -9.2007 -0.5707 23 6 -2.9104 -10.5119 -0.8503 24 6 -3.8443 -9.9192 -1.9072 25 6 -2.7589 -7.3953 0.7748 26 6 -2.0556 -6.0377 0.7094 27 1 -0.4851 0.8401 0.0004 28 1 3.9782 -2.7932 -0.0105 29 1 5.1963 -4.9249 -0.0208 30 1 3.9669 -7.0566 -0.0286 31 1 1.5102 -7.0738 -0.0281 32 1 -0.0666 -6.8684 0.7570 33 1 -1.3439 -6.1913 -1.9334 34 1 0.2080 -7.0299 -1.6903 35 1 -0.9599 -8.8629 -0.5070 36 1 -1.6306 -8.6412 -2.1407 37 1 -4.4724 -9.2286 0.1416 38 1 -1.8382 -10.4563 -1.0376 39 1 -3.2497 -11.4027 -0.3215 40 1 -4.7981 -10.4199 -2.0740 41 1 -3.3868 -9.4732 -2.7904 42 1 -2.1873 -8.0701 1.4121 43 1 -3.7594 -7.2665 1.1876 44 1 -1.9693 -5.6237 1.7140 45 1 -2.6336 -5.3576 0.0838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:55 Heat of formation + Delta-G solvation = -37.063176 kcal Electronic energy + Delta-G solvation = -26371.053014 eV Core-core repulsion = 22739.837593 eV Total energy + Delta-G solvation = -3631.215421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49766 -40.29523 -38.74255 -37.85712 -36.40053 -34.70262 -32.48352 -31.95770 -31.92940 -30.40067 -28.69173 -25.66378 -24.65872 -24.27663 -23.35551 -22.92390 -21.71360 -21.47132 -20.50454 -19.05123 -18.46732 -17.80153 -17.29399 -16.69091 -16.50528 -16.17930 -16.06072 -15.51085 -15.20268 -15.16133 -14.97747 -14.90351 -14.37220 -14.32342 -13.90395 -13.60150 -13.36170 -13.25155 -13.13756 -12.81244 -12.73285 -12.65135 -12.56684 -12.51474 -12.11414 -12.05986 -12.05463 -11.78440 -11.71362 -11.46836 -11.37460 -11.12269 -10.96305 -9.72535 -9.45076 -9.12190 -8.95690 -8.26214 -7.00076 0.27166 0.61658 1.36776 1.38725 1.54142 2.22184 2.30220 2.37322 2.63016 2.92412 3.08051 3.59402 3.64243 3.82238 3.86045 3.88852 3.96633 4.02802 4.05346 4.09452 4.17836 4.22054 4.27443 4.33423 4.48475 4.56224 4.57199 4.65079 4.68063 4.71655 4.79640 4.83532 4.92344 5.02205 5.09210 5.10253 5.17099 5.20164 5.24315 5.25189 5.44105 5.55448 5.72011 5.97618 6.01827 6.08623 6.10854 6.68653 6.75581 6.92769 8.35577 8.57642 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.003365 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.175493 B = 8319.983460 C = 9500.013663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.245 1.245 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.366 3.634 10 O -0.573 6.573 11 C -0.196 4.196 12 C -0.063 4.063 13 C -0.169 4.169 14 C -0.071 4.071 15 C -0.225 4.225 16 C 0.133 3.867 17 O -0.306 6.306 18 C 0.074 3.926 19 C -0.134 4.134 20 C 0.067 3.933 21 N -0.526 5.526 22 C 0.011 3.989 23 C -0.212 4.212 24 C -0.173 4.173 25 C 0.076 3.924 26 C -0.110 4.110 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 -20.016 0.040 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.168 1.168 7 C -0.582 4.582 8 H 0.110 0.890 9 C 0.264 3.736 10 O -0.466 6.466 11 C -0.198 4.198 12 C -0.082 4.082 13 C -0.187 4.187 14 C -0.089 4.089 15 C -0.244 4.244 16 C 0.086 3.914 17 O -0.219 6.219 18 C 0.018 3.982 19 C -0.172 4.172 20 C -0.060 4.060 21 N -0.249 5.249 22 C -0.098 4.098 23 C -0.251 4.251 24 C -0.211 4.211 25 C -0.051 4.051 26 C -0.148 4.148 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.174 0.826 30 H 0.182 0.818 31 H 0.165 0.835 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.532 -19.462 -0.255 19.471 hybrid contribution 0.443 0.548 0.332 0.779 sum -0.089 -18.914 0.077 18.915 Atomic orbital electron populations 1.70142 1.09954 1.29475 1.32687 1.27257 0.95486 1.05517 0.91330 0.85075 0.79117 0.74821 0.79718 1.18350 1.19411 1.16776 1.21417 0.95903 0.92342 1.48558 0.89042 1.18752 0.88467 0.88079 0.78320 1.90486 1.16713 1.89541 1.49811 1.21261 0.95585 0.94733 1.08182 1.21486 0.91517 0.99846 0.95312 1.21365 1.01262 0.91390 1.04635 1.21429 0.92628 0.99317 0.95528 1.21412 0.96299 0.95906 1.10741 1.19674 0.82894 0.94177 0.94641 1.86480 1.16628 1.32070 1.86683 1.22704 0.94192 0.83746 0.97540 1.22095 1.01119 0.97522 0.96485 1.22071 0.88363 0.94770 1.00809 1.61725 1.15322 1.26271 1.21578 1.22753 1.00069 0.85763 1.01234 1.23596 0.99057 0.98119 1.04280 1.23127 1.01993 1.02952 0.93003 1.21954 1.01261 0.92921 0.89011 1.21589 0.93595 0.98695 1.00957 0.91091 0.84953 0.82567 0.81833 0.83533 0.90232 0.92796 0.90389 0.92661 0.89234 0.85090 0.88457 0.87379 0.87054 0.89418 0.92950 0.88515 0.91281 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -49.44 11.73 21.88 0.26 -49.18 16 2 C 0.02 1.25 5.50 85.39 0.47 1.72 16 3 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.55 -32.45 8.86 23.67 0.21 -32.24 16 8 H 0.09 4.78 6.02 -2.91 -0.02 4.76 16 9 C 0.37 22.94 6.91 25.61 0.18 23.11 16 10 O -0.57 -40.66 13.72 16.16 0.22 -40.44 16 11 C -0.20 -10.03 5.90 -19.91 -0.12 -10.15 16 12 C -0.06 -2.60 9.43 22.53 0.21 -2.39 16 13 C -0.17 -5.17 10.02 22.25 0.22 -4.95 16 14 C -0.07 -1.99 10.03 22.34 0.22 -1.76 16 15 C -0.23 -7.54 8.27 22.34 0.18 -7.35 16 16 C 0.13 6.06 6.62 22.90 0.15 6.21 16 17 O -0.31 -14.78 7.89 -68.63 -0.54 -15.33 16 18 C 0.07 2.55 2.17 30.67 0.07 2.62 16 19 C -0.13 -3.98 5.38 30.64 0.16 -3.82 16 20 C 0.07 1.48 4.12 86.32 0.36 1.83 16 21 N -0.53 -11.98 4.88 -871.12 -4.25 -16.23 16 22 C 0.01 0.18 6.11 44.92 0.27 0.46 16 23 C -0.21 -2.92 9.58 30.59 0.29 -2.63 16 24 C -0.17 -2.63 9.93 30.59 0.30 -2.32 16 25 C 0.08 1.74 5.44 86.33 0.47 2.21 16 26 C -0.11 -3.58 5.75 30.65 0.18 -3.40 16 27 H 0.28 15.57 8.29 -92.70 -0.77 14.80 16 28 H 0.13 5.25 6.20 -2.91 -0.02 5.23 16 29 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.15 3.96 5.41 -2.91 -0.02 3.94 16 32 H 0.08 2.38 6.31 -2.39 -0.02 2.36 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.20 6.91 -2.38 -0.02 2.18 16 35 H 0.06 1.04 7.12 -2.39 -0.02 1.02 16 36 H 0.09 1.78 6.43 -2.38 -0.02 1.77 16 37 H 0.13 1.92 8.04 -2.39 -0.02 1.90 16 38 H 0.10 1.38 5.97 -2.39 -0.01 1.37 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.50 7.23 -2.38 -0.02 1.49 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -82.59 356.11 2.56 -80.03 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 1.00 Total: 30.82 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 3.84 Total: -32.85 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -3.99 Total: -65.41 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.32 Total: -55.77 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -82.59 2.56 -80.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.969 kcal (2) G-P(sol) polarization free energy of solvation -82.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds