Wall clock time and date at job start Fri Apr 10 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48495 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46718 * 299.99804 * 3 2 1 6 6 H 1.48501 * 109.47218 * 59.99394 * 3 2 1 7 7 C 1.40342 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.41764 * 119.99716 * 359.97438 * 7 2 1 10 10 O 1.21813 * 120.00024 * 0.02562 * 9 7 2 11 11 C 1.47569 * 119.99722 * 179.97438 * 9 7 2 12 12 C 1.39943 * 120.09430 * 180.02562 * 11 9 7 13 13 C 1.37119 * 119.90567 * 180.02562 * 12 11 9 14 14 C 1.39161 * 120.09532 * 0.02562 * 13 12 11 15 15 O 1.35660 * 119.90395 * 179.97438 * 14 13 12 16 16 C 1.42912 * 116.99677 * 185.35296 * 15 14 13 17 17 C 1.53118 * 109.52025 * 155.45196 * 16 15 14 18 18 C 1.53038 * 109.27366 * 177.62291 * 17 16 15 19 19 N 1.46844 * 109.51428 * 300.82294 * 18 17 16 20 20 C 1.46900 * 110.99815 * 185.83588 * 19 18 17 21 21 C 1.52998 * 117.49893 * 243.62152 * 20 19 18 22 22 C 1.52996 * 117.50004 * 174.99847 * 20 19 18 23 23 C 1.46818 * 111.20913 * 61.75242 * 19 18 17 24 24 C 1.53036 * 109.51715 * 298.24756 * 23 19 18 25 25 C 1.39159 * 120.18947 * 0.24589 * 14 13 12 26 26 C 1.37123 * 120.09240 * 359.49432 * 25 14 13 27 27 H 0.96998 * 119.99942 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.04965 * 359.97438 * 12 11 9 29 29 H 1.08004 * 119.95214 * 179.97438 * 13 12 11 30 30 H 1.08999 * 109.51928 * 35.32040 * 16 15 14 31 31 H 1.08995 * 109.50556 * 57.68082 * 17 16 15 32 32 H 1.09001 * 109.53448 * 297.58271 * 17 16 15 33 33 H 1.08999 * 109.46165 * 60.83882 * 18 17 16 34 34 H 1.09004 * 109.45888 * 180.81306 * 18 17 16 35 35 H 1.08999 * 115.55235 * 29.33156 * 20 19 18 36 36 H 1.08996 * 117.50135 * 0.02562 * 21 20 19 37 37 H 1.09002 * 117.49777 * 145.02641 * 21 20 19 38 38 H 1.09002 * 117.50544 * 214.97763 * 22 20 19 39 39 H 1.09004 * 117.49974 * 0.02562 * 22 20 19 40 40 H 1.08999 * 109.46628 * 178.23303 * 23 19 18 41 41 H 1.09000 * 109.46072 * 58.25672 * 23 19 18 42 42 H 1.09002 * 109.50614 * 299.23892 * 24 23 19 43 43 H 1.09007 * 109.53738 * 179.14294 * 24 23 19 44 44 H 1.08002 * 119.95368 * 179.72868 * 25 14 13 45 45 H 1.07996 * 120.05086 * 180.24914 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8805 2.3964 -1.2126 6 1 1.8804 2.3966 1.2124 7 6 2.0071 -1.2154 0.0005 8 1 3.0871 -1.2153 0.0010 9 6 1.2983 -2.4431 0.0016 10 8 0.0802 -2.4431 0.0016 11 6 2.0362 -3.7210 0.0016 12 6 1.3385 -4.9341 0.0022 13 6 2.0281 -6.1193 0.0027 14 6 3.4197 -6.1170 0.0033 15 8 4.0980 -7.2919 0.0043 16 6 5.5203 -7.2197 0.1236 17 6 6.0519 -8.5311 0.7086 18 6 7.5794 -8.4705 0.7786 19 7 8.1242 -8.2579 -0.5684 20 6 9.5913 -8.3324 -0.5607 21 6 10.3648 -7.0674 -0.9379 22 6 10.3100 -8.2486 -1.9087 23 6 7.6654 -6.9821 -1.1316 24 6 6.1404 -6.9982 -1.2587 25 6 4.1175 -4.9130 0.0084 26 6 3.4358 -3.7233 0.0025 27 1 -0.4850 0.8400 -0.0004 28 1 0.2585 -4.9369 0.0030 29 1 1.4904 -7.0560 0.0035 30 1 5.7892 -6.3923 0.7803 31 1 5.7495 -9.3625 0.0720 32 1 5.6470 -8.6738 1.7105 33 1 7.8809 -7.6473 1.4264 34 1 7.9620 -9.4084 1.1813 35 1 10.0252 -8.9795 0.2016 36 1 9.7852 -6.1798 -1.1914 37 1 11.3079 -6.8820 -0.4237 38 1 11.2170 -8.8403 -2.0333 39 1 9.6943 -8.1379 -2.8014 40 1 8.1104 -6.8387 -2.1163 41 1 7.9665 -6.1659 -0.4748 42 1 5.8393 -7.8055 -1.9263 43 1 5.7982 -6.0453 -1.6627 44 1 5.1975 -4.9157 0.0132 45 1 3.9780 -2.7893 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:09:58 Heat of formation + Delta-G solvation = -42.014216 kcal Electronic energy + Delta-G solvation = -25569.256434 eV Core-core repulsion = 21937.826319 eV Total energy + Delta-G solvation = -3631.430115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55329 -40.29813 -39.22997 -37.69806 -36.37153 -34.78966 -32.65162 -31.96565 -31.75627 -30.89352 -28.61218 -25.77396 -24.64124 -23.86084 -23.58086 -23.14915 -21.85655 -21.29550 -20.49110 -19.24726 -18.61058 -17.87164 -17.44779 -16.75745 -16.54018 -16.18069 -15.96415 -15.62665 -15.22606 -15.16091 -14.90730 -14.71970 -14.48764 -14.35541 -14.13089 -13.81971 -13.37026 -13.33632 -13.16258 -13.05301 -12.87191 -12.65441 -12.50242 -12.44687 -12.35832 -12.05179 -12.01736 -11.70580 -11.68169 -11.39259 -11.35367 -11.10758 -11.00549 -9.98722 -9.62061 -9.12061 -9.02589 -8.34961 -7.07923 0.21265 0.47787 1.36849 1.37734 1.56401 2.13494 2.20419 2.21035 2.64707 2.84985 3.09640 3.62220 3.66954 3.74560 3.86830 3.89218 3.94270 3.99546 4.05983 4.11030 4.21088 4.24407 4.26908 4.33282 4.46770 4.52353 4.60502 4.62118 4.72864 4.79443 4.81326 4.82334 4.89670 5.05236 5.07748 5.10327 5.13510 5.18577 5.22528 5.26096 5.34287 5.45200 5.73877 5.81718 5.97126 6.02824 6.12277 6.48874 6.69407 6.80015 8.24852 8.48918 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002743 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.212967 B =10203.555922 C =11489.318758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.242 1.242 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.096 0.904 9 C 0.364 3.636 10 O -0.601 6.601 11 C -0.180 4.180 12 C -0.066 4.066 13 C -0.163 4.163 14 C 0.133 3.867 15 O -0.313 6.313 16 C 0.078 3.922 17 C -0.107 4.107 18 C 0.065 3.935 19 N -0.518 5.518 20 C 0.015 3.985 21 C -0.219 4.219 22 C -0.172 4.172 23 C 0.061 3.939 24 C -0.139 4.139 25 C -0.209 4.209 26 C -0.053 4.053 27 H 0.282 0.718 28 H 0.113 0.887 29 H 0.145 0.855 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.379 -15.177 0.172 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.164 1.164 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.114 0.886 9 C 0.265 3.735 10 O -0.495 6.495 11 C -0.181 4.181 12 C -0.085 4.085 13 C -0.181 4.181 14 C 0.087 3.913 15 O -0.227 6.227 16 C 0.022 3.978 17 C -0.145 4.145 18 C -0.063 4.063 19 N -0.241 5.241 20 C -0.094 4.094 21 C -0.258 4.258 22 C -0.209 4.209 23 C -0.066 4.066 24 C -0.177 4.177 25 C -0.227 4.227 26 C -0.071 4.071 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.162 0.838 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.171 0.829 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 22.383 -15.746 -0.129 27.367 hybrid contribution 0.005 1.607 0.316 1.638 sum 22.388 -14.139 0.187 26.480 Atomic orbital electron populations 1.70122 1.10060 1.29812 1.31784 1.27325 0.95518 1.05723 0.91221 0.84990 0.79724 0.74897 0.78908 1.16429 1.18963 1.18959 1.21471 0.96157 0.92191 1.47448 0.88607 1.18816 0.88203 0.88473 0.78056 1.90437 1.17250 1.89831 1.52029 1.21457 0.95566 0.96383 1.04734 1.21004 0.99827 0.91547 0.96099 1.20311 0.91498 0.98406 1.07894 1.19166 0.91431 0.85074 0.95640 1.86029 1.21419 1.27647 1.87606 1.22731 0.77118 1.00464 0.97485 1.21630 0.95089 0.95613 1.02140 1.22079 0.92916 1.02575 0.88697 1.61794 1.07039 1.32843 1.22409 1.22751 0.85693 1.00804 1.00144 1.23593 1.03369 0.93544 1.05314 1.23108 1.02466 1.01584 0.93786 1.22080 0.93651 0.90269 1.00638 1.22139 0.95505 1.03039 0.97056 1.21263 1.00912 0.91183 1.09388 1.21249 0.92626 0.98618 0.94611 0.90766 0.86925 0.83750 0.90672 0.90381 0.89597 0.93857 0.88044 0.85015 0.88772 0.87847 0.87228 0.89346 0.89743 0.93689 0.90761 0.91031 0.82873 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.34 11.73 21.89 0.26 -47.08 16 2 C 0.02 1.13 5.50 85.40 0.47 1.60 16 3 Si 1.00 39.22 29.56 68.60 2.03 41.24 16 4 H -0.24 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.54 -30.54 8.86 23.65 0.21 -30.33 16 8 H 0.10 4.75 6.01 -2.91 -0.02 4.73 16 9 C 0.36 21.88 6.91 25.61 0.18 22.06 16 10 O -0.60 -41.18 14.89 -4.71 -0.07 -41.25 16 11 C -0.18 -8.86 5.89 -19.99 -0.12 -8.97 16 12 C -0.07 -2.97 9.57 22.42 0.21 -2.76 16 13 C -0.16 -5.92 9.95 22.23 0.22 -5.70 16 14 C 0.13 4.36 6.62 22.71 0.15 4.51 16 15 O -0.31 -8.75 9.80 -89.76 -0.88 -9.63 16 16 C 0.08 1.63 2.17 30.67 0.07 1.69 16 17 C -0.11 -1.75 5.75 30.65 0.18 -1.57 16 18 C 0.06 0.84 5.42 86.33 0.47 1.31 16 19 N -0.52 -7.68 4.86 -871.21 -4.24 -11.92 16 20 C 0.01 0.18 6.12 44.91 0.27 0.46 16 21 C -0.22 -2.51 9.51 30.59 0.29 -2.22 16 22 C -0.17 -1.97 9.97 30.59 0.31 -1.67 16 23 C 0.06 0.97 4.09 86.33 0.35 1.33 16 24 C -0.14 -2.73 5.37 30.65 0.16 -2.56 16 25 C -0.21 -6.76 8.22 22.23 0.18 -6.58 16 26 C -0.05 -2.11 9.41 22.42 0.21 -1.90 16 27 H 0.28 15.03 8.29 -92.71 -0.77 14.26 16 28 H 0.11 5.33 7.65 -2.91 -0.02 5.31 16 29 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.08 1.53 6.30 -2.39 -0.02 1.52 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.13 1.22 7.99 -2.39 -0.02 1.20 16 36 H 0.09 1.20 5.91 -2.39 -0.01 1.18 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.17 7.55 -2.39 -0.02 1.16 16 40 H 0.08 1.29 6.49 -2.39 -0.02 1.28 16 41 H 0.04 0.69 7.35 -2.39 -0.02 0.67 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.52 6.89 -2.38 -0.02 1.50 16 44 H 0.15 3.86 5.38 -2.91 -0.02 3.84 16 45 H 0.14 5.17 6.19 -2.91 -0.02 5.15 16 Total: -1.00 -74.51 358.46 1.92 -72.59 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.00 Total: 27.35 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.82 Total: -31.31 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -3.98 Total: -59.00 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.95 Total: -50.87 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.24 kcal Total: -74.51 1.92 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.579 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds