Wall clock time and date at job start Fri Apr 10 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 119.99610 * 2 1 4 4 H 1.48493 * 109.46630 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46606 * 299.99646 * 3 2 1 6 6 H 1.48499 * 109.46981 * 59.99610 * 3 2 1 7 7 C 1.39944 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99584 * 163.53317 * 7 2 1 9 9 C 1.41394 * 120.00233 * 343.53762 * 7 2 1 10 10 C 1.40735 * 120.24346 * 334.18176 * 9 7 2 11 11 C 1.37600 * 119.74207 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24800 * 0.02562 * 11 10 9 13 13 C 1.38605 * 120.50605 * 359.68565 * 12 11 10 14 14 C 1.37639 * 120.24663 * 0.58999 * 13 12 11 15 15 C 1.50703 * 120.12926 * 179.70018 * 14 13 12 16 16 N 1.46901 * 109.47455 * 259.73027 * 15 14 13 17 17 C 1.46852 * 110.99905 * 170.00213 * 16 15 14 18 18 C 1.53140 * 109.45329 * 173.68438 * 17 16 15 19 19 C 1.52600 * 109.30585 * 58.34233 * 18 17 16 20 20 C 1.54219 * 109.94106 * 181.90337 * 19 18 17 21 21 C 1.54681 * 101.92373 * 255.93332 * 20 19 18 22 22 O 1.45876 * 104.58292 * 333.61728 * 21 20 19 23 23 C 1.34210 * 109.91219 * 30.26757 * 22 21 20 24 24 O 1.20833 * 125.18743 * 159.31803 * 23 22 21 25 25 C 1.52595 * 110.38572 * 303.56528 * 19 18 17 26 26 C 1.46843 * 110.99854 * 45.64275 * 16 15 14 27 27 H 0.96996 * 120.00941 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.12778 * 359.95755 * 10 9 7 29 29 H 1.08000 * 119.87138 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.74622 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.88242 * 180.30212 * 13 12 11 32 32 H 1.09008 * 109.46953 * 139.73063 * 15 14 13 33 33 H 1.08995 * 109.46966 * 19.73245 * 15 14 13 34 34 H 1.08997 * 109.47639 * 53.68851 * 17 16 15 35 35 H 1.09000 * 109.47472 * 293.67546 * 17 16 15 36 36 H 1.09003 * 109.49915 * 298.38975 * 18 17 16 37 37 H 1.08998 * 109.52460 * 178.31076 * 18 17 16 38 38 H 1.09004 * 110.89819 * 137.81531 * 20 19 18 39 39 H 1.08998 * 111.03202 * 14.11181 * 20 19 18 40 40 H 1.08996 * 110.43460 * 214.81196 * 21 20 19 41 41 H 1.09002 * 110.43540 * 92.42870 * 21 20 19 42 42 H 1.08998 * 109.50188 * 176.38169 * 25 19 18 43 43 H 1.09003 * 109.49790 * 296.47936 * 25 19 18 44 44 H 1.08998 * 109.47839 * 306.31528 * 26 16 15 45 45 H 1.09000 * 109.47102 * 66.31950 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8833 2.3964 -1.2126 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0548 -1.2311 -0.2646 9 6 1.3446 -2.4112 0.3481 10 6 0.2135 -2.3788 1.1849 11 6 -0.4245 -3.5521 1.5161 12 6 0.0433 -4.7630 1.0291 13 6 1.1528 -4.8064 0.1994 14 6 1.8101 -3.6458 -0.1404 15 6 3.0201 -3.6967 -1.0373 16 7 4.2384 -3.6031 -0.2218 17 6 5.4336 -3.8855 -1.0270 18 6 6.6875 -3.6255 -0.1872 19 6 6.6507 -4.5042 1.0599 20 6 7.8841 -4.2193 1.9407 21 6 8.7730 -5.4524 1.6545 22 8 7.8337 -6.5023 1.2757 23 6 6.7582 -5.9612 0.6826 24 8 5.9925 -6.5510 -0.0427 25 6 5.3710 -4.2505 1.8514 26 6 4.1596 -4.4902 0.9457 27 1 -0.4851 0.8399 -0.0004 28 1 -0.1521 -1.4366 1.5658 29 1 -1.2929 -3.5295 2.1578 30 1 -0.4635 -5.6791 1.2946 31 1 1.5056 -5.7547 -0.1781 32 1 2.9876 -2.8631 -1.7390 33 1 3.0238 -4.6365 -1.5894 34 1 5.4426 -3.2378 -1.9036 35 1 5.4193 -4.9279 -1.3454 36 1 6.7168 -2.5765 0.1077 37 1 7.5748 -3.8633 -0.7739 38 1 7.6077 -4.1749 2.9942 39 1 8.3819 -3.3004 1.6312 40 1 9.3244 -5.7401 2.5496 41 1 9.4611 -5.2437 0.8353 42 1 5.3289 -4.9299 2.7027 43 1 5.3613 -3.2201 2.2068 44 1 3.2445 -4.2811 1.4999 45 1 4.1540 -5.5283 0.6136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235525581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:12 Heat of formation + Delta-G solvation = -76.047723 kcal Electronic energy + Delta-G solvation = -27399.815231 eV Core-core repulsion = 23766.909313 eV Total energy + Delta-G solvation = -3632.905918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.56910 -40.08660 -38.76303 -38.40319 -35.56051 -35.39038 -32.42377 -31.91061 -31.28932 -30.33032 -27.76884 -26.91240 -25.10895 -24.27360 -23.41518 -22.80111 -22.41469 -21.11274 -20.34606 -18.96137 -18.03197 -17.60125 -17.31921 -17.03608 -16.44473 -16.18192 -15.95429 -15.72356 -15.44335 -15.15662 -14.81374 -14.65994 -14.48778 -14.31133 -13.74285 -13.55168 -13.47321 -13.31593 -13.19233 -12.95872 -12.85975 -12.77302 -12.69026 -12.47605 -12.29383 -12.09619 -12.03062 -11.68701 -11.35447 -11.27486 -11.22402 -11.01759 -10.93570 -10.82634 -9.24738 -9.20316 -8.94257 -8.53255 -6.19535 1.00671 1.01294 1.12541 1.43940 1.56876 1.59458 2.28097 2.28897 2.81705 2.92829 3.19102 3.35904 3.59342 3.86135 3.86942 3.95422 4.18637 4.26474 4.31460 4.43088 4.47060 4.51840 4.59471 4.62445 4.67329 4.71881 4.75874 4.78498 4.85719 4.92952 5.04591 5.06001 5.11508 5.15100 5.19290 5.25754 5.33055 5.41835 5.56543 5.78913 5.80200 6.03863 6.19564 6.24082 6.32206 6.41989 6.46615 6.49315 6.82197 7.09150 7.15684 8.43550 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.004587 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.347473 B = 6103.203865 C = 7243.599563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.105 3.895 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.247 4.247 13 C -0.093 4.093 14 C -0.199 4.199 15 C 0.134 3.866 16 N -0.521 5.521 17 C 0.040 3.960 18 C -0.087 4.087 19 C -0.117 4.117 20 C -0.137 4.137 21 C 0.048 3.952 22 O -0.369 6.369 23 C 0.486 3.514 24 O -0.491 6.491 25 C -0.089 4.089 26 C 0.057 3.943 27 H 0.283 0.717 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.649 -2.820 4.086 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.495 4.495 8 H 0.110 0.890 9 C 0.102 3.898 10 C -0.210 4.210 11 C -0.130 4.130 12 C -0.266 4.266 13 C -0.112 4.112 14 C -0.201 4.201 15 C 0.007 3.993 16 N -0.246 5.246 17 C -0.088 4.088 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.175 4.175 21 C -0.025 4.025 22 O -0.287 6.287 23 C 0.328 3.672 24 O -0.377 6.377 25 C -0.127 4.127 26 C -0.071 4.071 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 18.205 -2.689 3.929 18.817 hybrid contribution -0.770 -0.342 -0.490 0.974 sum 17.435 -3.031 3.439 18.028 Atomic orbital electron populations 1.69914 1.09106 1.30073 1.36717 1.26783 0.95303 1.04512 0.91562 0.85245 0.79994 0.76651 0.78362 1.17531 1.19785 1.19515 1.19924 0.98312 0.91098 1.40193 0.89035 1.17678 0.90911 0.92570 0.88637 1.21333 1.00478 0.96631 1.02603 1.20907 0.98985 0.93196 0.99960 1.20594 1.01615 0.96783 1.07607 1.20621 0.96163 0.96163 0.98218 1.19727 1.00953 0.93324 1.06060 1.20461 0.87453 0.97731 0.93621 1.61998 1.01606 1.52701 1.08267 1.22290 0.90743 0.99116 0.96684 1.21486 0.96901 1.00529 0.93509 1.21737 0.99208 0.91902 0.99045 1.23147 0.92749 1.00305 1.01249 1.24584 0.89950 0.83903 1.04052 1.87028 1.31559 1.39554 1.70523 1.23456 0.79003 0.89408 0.75307 1.90663 1.43759 1.70301 1.32948 1.21448 0.90921 1.03695 0.96597 1.22027 0.98809 0.93584 0.92676 0.90608 0.88280 0.87755 0.87403 0.88798 0.91725 0.97009 0.90418 0.95560 0.88238 0.89099 0.87808 0.85490 0.84416 0.87647 0.90790 0.88841 0.92237 0.96353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.67 10.97 21.83 0.24 -43.43 16 2 C 0.03 1.61 5.16 85.26 0.44 2.05 16 3 Si 0.98 37.94 29.59 68.60 2.03 39.97 16 4 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.47 -24.29 8.18 23.46 0.19 -24.10 16 8 H 0.09 4.65 6.85 -2.91 -0.02 4.63 16 9 C 0.10 5.58 5.56 -21.29 -0.12 5.46 16 10 C -0.19 -10.22 8.68 22.73 0.20 -10.03 16 11 C -0.11 -5.42 10.02 22.22 0.22 -5.20 16 12 C -0.25 -11.36 10.05 22.46 0.23 -11.13 16 13 C -0.09 -4.34 8.64 22.22 0.19 -4.15 16 14 C -0.20 -9.69 3.72 -19.40 -0.07 -9.77 16 15 C 0.13 5.83 4.60 85.56 0.39 6.22 16 16 N -0.52 -19.68 4.52 -900.50 -4.07 -23.75 16 17 C 0.04 1.23 5.19 86.36 0.45 1.68 16 18 C -0.09 -1.90 4.71 30.51 0.14 -1.76 16 19 C -0.12 -2.54 0.64 -52.72 -0.03 -2.58 16 20 C -0.14 -1.52 6.37 31.58 0.20 -1.32 16 21 C 0.05 0.50 7.91 72.56 0.57 1.07 16 22 O -0.37 -8.44 11.06 -51.57 -0.57 -9.01 16 23 C 0.49 13.57 6.99 71.29 0.50 14.07 16 24 O -0.49 -18.15 13.90 21.60 0.30 -17.85 16 25 C -0.09 -2.42 4.73 30.51 0.14 -2.28 16 26 C 0.06 2.12 4.59 86.36 0.40 2.52 16 27 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 28 H 0.10 5.55 6.21 -2.91 -0.02 5.53 16 29 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.09 4.10 8.03 -2.91 -0.02 4.08 16 32 H 0.06 2.92 7.34 -2.38 -0.02 2.90 16 33 H 0.01 0.51 7.93 -2.39 -0.02 0.49 16 34 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 35 H 0.03 0.92 6.05 -2.39 -0.01 0.91 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 0.98 7.80 -2.38 -0.02 0.96 16 39 H 0.13 0.79 7.78 -2.39 -0.02 0.77 16 40 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.06 2.58 6.01 -2.39 -0.01 2.57 16 45 H 0.02 0.75 6.19 -2.39 -0.01 0.73 16 Total: -1.00 -67.62 348.68 2.96 -64.66 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.99 Total: 28.65 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 4.04 Total: -39.25 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -3.83 Total: -67.18 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.27 Total: -26.86 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -67.62 2.96 -64.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.390 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds