Wall clock time and date at job start Fri Apr 10 2020 23:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86796 * 119.99830 * 2 1 4 4 H 1.48500 * 109.47278 * 239.99940 * 3 2 1 5 5 H 1.48502 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47157 * 120.00205 * 3 2 1 7 7 C 1.38620 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99777 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00397 * 359.97438 * 7 2 1 10 10 C 1.35794 * 117.00245 * 185.05661 * 9 7 2 11 11 C 1.38904 * 119.99220 * 354.46019 * 10 9 7 12 12 C 1.38012 * 120.00302 * 180.02562 * 11 10 9 13 13 C 1.38950 * 119.99434 * 359.97438 * 12 11 10 14 14 N 1.39779 * 120.00463 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99890 * 180.02562 * 14 13 12 16 16 H 1.09005 * 112.88790 * 333.33047 * 15 14 13 17 17 C 1.53858 * 113.58938 * 104.51019 * 15 14 13 18 18 H 1.08992 * 116.72190 * 19.61034 * 17 15 14 19 19 C 1.54432 * 112.95572 * 242.53246 * 17 15 14 20 20 C 1.54434 * 104.27189 * 266.32026 * 19 17 15 21 21 O 1.43490 * 104.92653 * 23.82643 * 20 19 17 22 22 C 1.44258 * 106.16079 * 320.41135 * 21 20 19 23 23 H 1.09004 * 114.87524 * 269.97558 * 22 21 20 24 24 C 1.52815 * 114.53118 * 132.25498 * 22 21 20 25 25 C 1.52993 * 121.05209 * 153.49523 * 24 22 21 26 26 C 1.53944 * 86.79435 * 209.47568 * 25 24 22 27 27 C 1.52973 * 121.09274 * 45.14451 * 24 22 21 28 28 C 1.38947 * 119.98740 * 0.26606 * 13 12 11 29 29 C 1.38015 * 119.99559 * 359.48031 * 28 13 12 30 30 H 0.96993 * 120.00443 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99755 * 359.97438 * 11 10 9 32 32 H 1.07993 * 120.00266 * 179.97438 * 12 11 10 33 33 H 0.97002 * 120.00163 * 0.02562 * 14 13 12 34 34 H 1.09003 * 110.49537 * 25.05913 * 19 17 15 35 35 H 1.09002 * 110.49104 * 147.58325 * 19 17 15 36 36 H 1.09003 * 110.37137 * 143.27488 * 20 19 17 37 37 H 1.09001 * 110.37055 * 265.60602 * 20 19 17 38 38 H 1.09001 * 113.65640 * 323.95292 * 25 24 22 39 39 H 1.08998 * 113.65944 * 95.00327 * 25 24 22 40 40 H 1.08998 * 113.58072 * 270.18631 * 26 25 24 41 41 H 1.09004 * 113.57876 * 139.39047 * 26 25 24 42 42 H 1.08997 * 113.65972 * 264.97463 * 27 24 22 43 43 H 1.09007 * 113.65231 * 36.01072 * 27 24 22 44 44 H 1.08001 * 120.00573 * 179.74392 * 28 13 12 45 45 H 1.07999 * 119.99673 * 180.23672 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0890 -1.2004 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0705 -3.5046 0.1056 11 6 3.4579 -3.4376 0.0918 12 6 4.2057 -4.5925 0.1991 13 6 3.5706 -5.8224 0.3214 14 7 4.3278 -6.9923 0.4296 15 6 3.6581 -8.2890 0.5580 16 1 2.6688 -8.2124 1.0090 17 6 3.6832 -9.1254 -0.7332 18 1 4.4369 -8.8602 -1.4744 19 6 2.2730 -9.4045 -1.2975 20 6 1.8880 -10.7752 -0.6993 21 8 2.6825 -10.8961 0.4894 22 6 3.9801 -10.3578 0.1615 23 1 4.6912 -11.0836 -0.2330 24 6 4.5354 -9.3709 1.1877 25 6 6.0428 -9.1674 1.3514 26 6 5.7496 -8.8272 2.8239 27 6 4.4677 -9.6683 2.6867 28 6 2.1828 -5.8895 0.3301 29 6 1.4354 -4.7338 0.2281 30 1 -0.4850 0.8399 0.0004 31 1 3.9513 -2.4817 -0.0037 32 1 5.2843 -4.5405 0.1880 33 1 5.2967 -6.9457 0.4196 34 1 1.5725 -8.6355 -0.9718 35 1 2.3012 -9.4573 -2.3859 36 1 0.8250 -10.7993 -0.4593 37 1 2.1391 -11.5765 -1.3942 38 1 6.6242 -10.0801 1.2207 39 1 6.4356 -8.3275 0.7783 40 1 5.5597 -7.7679 2.9972 41 1 6.4744 -9.2474 3.5212 42 1 3.6013 -9.2291 3.1811 43 1 4.6074 -10.7216 2.9304 44 1 1.6889 -6.8457 0.4210 45 1 0.3567 -4.7856 0.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329377446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:20 Heat of formation + Delta-G solvation = -3.642697 kcal Electronic energy + Delta-G solvation = -26281.188160 eV Core-core repulsion = 22651.421959 eV Total energy + Delta-G solvation = -3629.766201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52712 -40.62172 -38.87908 -38.40523 -35.63236 -34.21896 -33.38244 -31.78485 -31.50570 -28.92096 -27.24975 -26.74481 -25.45357 -25.17107 -23.56356 -22.85517 -22.30595 -21.19679 -19.85436 -18.98573 -18.91171 -17.84078 -17.69216 -17.14738 -16.41111 -16.22656 -16.08029 -15.95866 -15.40151 -15.31796 -15.14648 -14.89303 -14.42962 -14.22649 -14.08333 -13.64968 -13.45752 -13.32093 -13.21964 -13.09066 -12.90745 -12.72487 -12.51693 -12.42780 -12.19712 -12.13476 -12.05820 -11.71866 -11.46882 -11.21828 -11.07136 -10.92153 -10.70016 -10.45137 -10.09724 -9.78238 -8.38956 -7.93167 -6.02893 0.58039 0.92628 1.36710 1.48017 1.52955 2.22994 2.56860 2.68143 2.90775 3.24161 3.25039 3.46033 3.63684 3.69444 3.76820 3.86212 3.95924 4.10038 4.12813 4.15011 4.28406 4.33283 4.40634 4.47035 4.55700 4.60351 4.68316 4.75125 4.86253 4.87890 4.90761 4.92694 4.99417 5.07871 5.09666 5.11661 5.14149 5.17370 5.30265 5.41794 5.50860 5.53599 5.55308 5.78175 5.96057 6.00700 6.11350 6.60887 7.03352 7.07169 7.93612 8.85438 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.002895 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.841287 B = 9668.484864 C =10410.850704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.407 4.407 8 H 0.099 0.901 9 O -0.243 6.243 10 C 0.063 3.937 11 C -0.192 4.192 12 C -0.143 4.143 13 C 0.155 3.845 14 N -0.727 5.727 15 C 0.171 3.829 16 H 0.089 0.911 17 C -0.151 4.151 18 H 0.117 0.883 19 C -0.152 4.152 20 C 0.048 3.952 21 O -0.378 6.378 22 C 0.066 3.934 23 H 0.109 0.891 24 C -0.105 4.105 25 C -0.100 4.100 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.145 4.145 29 C -0.156 4.156 30 H 0.270 0.730 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.403 0.597 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.571 -23.157 0.253 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.224 4.224 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.116 0.884 9 O -0.151 6.151 10 C 0.014 3.986 11 C -0.212 4.212 12 C -0.165 4.165 13 C 0.055 3.945 14 N -0.361 5.361 15 C 0.064 3.936 16 H 0.107 0.893 17 C -0.171 4.171 18 H 0.135 0.865 19 C -0.189 4.189 20 C -0.028 4.028 21 O -0.298 6.298 22 C 0.009 3.991 23 H 0.126 0.874 24 C -0.106 4.106 25 C -0.137 4.137 26 C -0.175 4.175 27 C -0.159 4.159 28 C -0.167 4.167 29 C -0.176 4.176 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.241 0.759 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.151 0.849 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.969 -23.200 0.454 26.583 hybrid contribution -0.030 1.183 -0.237 1.207 sum 12.940 -22.017 0.217 25.538 Atomic orbital electron populations 1.70197 1.07990 1.28488 1.50044 1.26533 0.96834 1.02644 0.96437 0.84680 0.77352 0.74529 0.79842 1.18163 1.19841 1.18282 1.21728 0.92363 0.81769 1.52513 0.88382 1.83935 1.35564 1.12319 1.83278 1.19715 0.91534 0.87937 0.99445 1.21056 0.92857 0.99439 1.07815 1.20485 0.99719 0.90056 1.06241 1.17498 0.90551 0.86939 0.99539 1.44252 1.07266 1.01648 1.82945 1.21946 0.96036 0.80958 0.94662 0.89343 1.24651 0.98012 0.97176 0.97299 0.86481 1.22932 0.96229 0.97834 1.01949 1.23458 0.96640 0.96082 0.86636 1.88765 1.23095 1.83165 1.34742 1.23832 0.86690 0.92958 0.95668 0.87353 1.22979 0.97535 0.94785 0.95296 1.22565 0.91911 1.02874 0.96368 1.22811 0.97624 0.99904 0.97138 1.22636 0.98159 1.00697 0.94382 1.20391 0.92314 0.96937 1.07023 1.20199 0.99471 0.90246 1.07650 0.92152 0.86252 0.84162 0.75895 0.91704 0.89565 0.88443 0.91016 0.87603 0.90583 0.91202 0.90148 0.93007 0.89061 0.84867 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.67 13.67 21.61 0.30 -58.37 16 2 C -0.03 -1.66 5.49 84.82 0.47 -1.19 16 3 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.41 -24.39 9.48 67.91 0.64 -23.74 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 9 O -0.24 -15.11 9.76 -23.08 -0.23 -15.33 16 10 C 0.06 3.25 6.65 22.59 0.15 3.40 16 11 C -0.19 -8.50 9.16 22.38 0.20 -8.29 16 12 C -0.14 -4.94 9.89 22.39 0.22 -4.72 16 13 C 0.16 4.93 6.66 38.21 0.25 5.19 16 14 N -0.73 -16.67 5.47 -317.64 -1.74 -18.41 16 15 C 0.17 3.54 3.16 45.23 0.14 3.68 16 16 H 0.09 2.22 6.06 -2.38 -0.01 2.21 16 17 C -0.15 -2.63 4.88 -9.28 -0.05 -2.68 16 18 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 19 C -0.15 -2.64 6.64 31.57 0.21 -2.44 16 20 C 0.05 0.77 7.63 72.47 0.55 1.32 16 21 O -0.38 -7.62 11.15 -148.98 -1.66 -9.28 16 22 C 0.07 1.08 5.16 31.27 0.16 1.24 16 23 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 24 C -0.10 -1.72 0.98 -52.30 -0.05 -1.77 16 25 C -0.10 -1.23 7.45 30.91 0.23 -1.00 16 26 C -0.14 -2.03 8.08 31.22 0.25 -1.77 16 27 C -0.12 -2.09 7.77 30.90 0.24 -1.85 16 28 C -0.14 -5.12 9.25 22.39 0.21 -4.91 16 29 C -0.16 -6.91 9.98 22.37 0.22 -6.69 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.12 5.35 5.63 -2.91 -0.02 5.34 16 32 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.40 7.63 6.65 -92.71 -0.62 7.02 16 34 H 0.06 1.34 7.40 -2.39 -0.02 1.32 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.87 6.39 -2.39 -0.02 0.86 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 44 H 0.13 4.06 5.62 -2.91 -0.02 4.04 16 45 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -72.87 358.03 3.16 -69.71 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.40 Total: 31.89 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 4.06 Total: -46.23 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.44 Total: -76.78 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.89 Total: -24.61 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.87 3.16 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329377446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.065 kcal (2) G-P(sol) polarization free energy of solvation -72.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds