Wall clock time and date at job start Fri Apr 10 2020 23:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00371 * 2 1 4 4 H 1.48493 * 109.47397 * 239.99952 * 3 2 1 5 5 H 1.48504 * 109.46771 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46914 * 119.99816 * 3 2 1 7 7 C 1.37875 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00613 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52658 * 179.97438 * 9 7 2 11 11 C 1.53031 * 109.28042 * 182.37869 * 10 9 7 12 12 N 1.46850 * 109.52596 * 59.18031 * 11 10 9 13 13 C 1.46902 * 111.00216 * 174.16510 * 12 11 10 14 14 C 1.52993 * 109.47101 * 176.15240 * 13 12 11 15 15 H 1.08994 * 109.47646 * 298.77731 * 14 13 12 16 16 O 1.42905 * 109.47232 * 58.78016 * 14 13 12 17 17 C 1.50697 * 109.47165 * 178.77566 * 14 13 12 18 18 C 1.33997 * 124.92136 * 99.99623 * 17 14 13 19 19 C 1.46781 * 106.18724 * 179.97438 * 18 17 14 20 20 C 1.39413 * 134.37416 * 180.02562 * 19 18 17 21 21 C 1.36728 * 119.71674 * 179.97438 * 20 19 18 22 22 C 1.38746 * 120.42128 * 359.97438 * 21 20 19 23 23 C 1.37845 * 120.68390 * 0.02785 * 22 21 20 24 24 C 1.38945 * 119.81897 * 359.97215 * 23 22 21 25 25 O 1.34452 * 124.92471 * 279.69868 * 17 14 13 26 26 C 1.46850 * 111.19364 * 298.25840 * 12 11 10 27 27 C 1.53037 * 109.52462 * 61.74381 * 26 12 11 28 28 H 0.97000 * 119.99634 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.52637 * 300.12976 * 9 7 2 30 30 H 1.09002 * 109.50250 * 62.43580 * 10 9 7 31 31 H 1.09001 * 109.53336 * 302.33959 * 10 9 7 32 32 H 1.09004 * 109.46162 * 299.16189 * 11 10 9 33 33 H 1.09001 * 109.45882 * 179.19255 * 11 10 9 34 34 H 1.08997 * 109.47238 * 56.14806 * 13 12 11 35 35 H 1.09003 * 109.46355 * 296.15199 * 13 12 11 36 36 H 0.96695 * 114.00465 * 59.99648 * 16 14 13 37 37 H 1.08005 * 126.90752 * 359.97438 * 18 17 14 38 38 H 1.08003 * 120.13970 * 359.97438 * 20 19 18 39 39 H 1.08008 * 119.79207 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.65635 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.09344 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.45836 * 181.75534 * 26 12 11 43 43 H 1.08999 * 109.46176 * 301.72573 * 26 12 11 44 44 H 1.08996 * 109.50176 * 180.87999 * 27 26 12 45 45 H 1.08995 * 109.53663 * 60.77473 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2448 -3.6640 -0.0027 11 6 1.4749 -4.9851 -0.0639 12 7 0.6531 -5.0184 -1.2804 13 6 0.0066 -6.3274 -1.4434 14 6 -0.9137 -6.2931 -2.6651 15 1 -1.6887 -5.5415 -2.5153 16 8 -0.1501 -5.9648 -3.8276 17 6 -1.5538 -7.6448 -2.8499 18 6 -2.7979 -7.9632 -2.4671 19 6 -2.9946 -9.3684 -2.8428 20 6 -4.0500 -10.2713 -2.7222 21 6 -3.9064 -11.5481 -3.1897 22 6 -2.7181 -11.9496 -3.7830 23 6 -1.6638 -11.0709 -3.9109 24 6 -1.7888 -9.7688 -3.4425 25 8 -0.9615 -8.7044 -3.4279 26 6 -0.3406 -3.9372 -1.2796 27 6 0.3751 -2.5847 -1.2548 28 1 -0.4849 0.8401 -0.0004 29 1 0.6219 -2.5575 0.8865 30 1 2.8427 -3.6330 0.9081 31 1 2.8994 -3.5838 -0.8706 32 1 0.8313 -5.0712 0.8117 33 1 2.1802 -5.8160 -0.0792 34 1 -0.5794 -6.5566 -0.5534 35 1 0.7687 -7.0939 -1.5839 36 1 0.5593 -6.5923 -4.0224 37 1 -3.5123 -7.3159 -1.9801 38 1 -4.9771 -9.9634 -2.2616 39 1 -4.7234 -12.2485 -3.0973 40 1 -2.6183 -12.9610 -4.1484 41 1 -0.7430 -11.3936 -4.3739 42 1 -0.9540 -4.0071 -2.1779 43 1 -0.9756 -4.0282 -0.3984 44 1 -0.3628 -1.7828 -1.2384 45 1 0.9997 -2.4866 -2.1427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343896676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:22 Heat of formation + Delta-G solvation = -39.361755 kcal Electronic energy + Delta-G solvation = -25801.245515 eV Core-core repulsion = 22169.930419 eV Total energy + Delta-G solvation = -3631.315095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53310 -40.22622 -38.92246 -37.91076 -35.57684 -34.06243 -33.28254 -31.51789 -31.37530 -31.30629 -28.97653 -27.13754 -24.88388 -24.13230 -23.64543 -22.93905 -22.44168 -21.82019 -20.35542 -18.77777 -18.40912 -18.34266 -17.43004 -17.12945 -16.78377 -16.44504 -16.24335 -16.11941 -15.50929 -15.17169 -14.98090 -14.71639 -14.63992 -14.29047 -14.14412 -14.03084 -13.83574 -13.30228 -13.12958 -13.02373 -12.82794 -12.79173 -12.58246 -12.42984 -12.36452 -11.99766 -11.91174 -11.85681 -11.39099 -11.32031 -11.08545 -10.80069 -10.59883 -10.35707 -9.62118 -9.19313 -9.17710 -8.06742 -6.19675 -0.11383 0.37445 1.24410 1.41863 1.43403 1.50752 1.56762 2.44763 2.75251 2.86759 3.19874 3.23663 3.52952 3.66856 3.72736 3.94419 4.04677 4.10043 4.19142 4.23616 4.30573 4.37433 4.40280 4.49850 4.51922 4.60155 4.66750 4.76042 4.81164 4.90159 4.93245 4.98227 5.10829 5.18145 5.24204 5.31453 5.35146 5.42512 5.49974 5.58074 5.64012 5.71743 6.01083 6.01937 6.13495 6.23915 6.29537 6.42565 6.67210 6.91568 7.47696 8.97695 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.002380 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.120085 B =11762.711209 C =11968.576223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.043 3.957 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.530 5.530 13 C 0.031 3.969 14 C 0.196 3.804 15 H 0.129 0.871 16 O -0.548 6.548 17 C -0.002 4.002 18 C -0.203 4.203 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.120 4.120 24 C 0.024 3.976 25 O -0.201 6.201 26 C 0.064 3.936 27 C -0.093 4.093 28 H 0.260 0.740 29 H -0.011 1.011 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.390 0.610 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.076 0.924 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -25.247 -6.475 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.255 5.255 13 C -0.097 4.097 14 C 0.136 3.864 15 H 0.147 0.853 16 O -0.355 6.355 17 C -0.050 4.050 18 C -0.223 4.223 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.138 4.138 24 C -0.023 4.023 25 O -0.103 6.103 26 C -0.064 4.064 27 C -0.132 4.132 28 H 0.069 0.931 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.239 0.761 37 H 0.191 0.809 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.165 0.835 42 H 0.094 0.906 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.404 -24.549 -6.994 26.578 hybrid contribution 0.088 0.864 0.969 1.301 sum -7.316 -23.685 -6.025 25.511 Atomic orbital electron populations 1.70005 1.07090 1.27077 1.51520 1.25741 0.95715 1.02322 0.94927 0.85701 0.78455 0.79278 0.78754 1.19803 1.20956 1.19689 1.21562 0.92981 0.92301 1.50314 0.93146 1.18671 0.93195 0.92609 0.93047 1.21535 0.97991 0.93949 1.00229 1.22070 0.96102 0.98438 0.89557 1.61929 1.23272 1.02058 1.38214 1.22794 0.97722 0.92258 0.96941 1.20639 0.93153 0.86642 0.85923 0.85333 1.86609 1.49532 1.54731 1.44584 1.23311 0.93793 0.89432 0.98500 1.22583 0.97152 0.95243 1.07276 1.20263 0.96282 0.94882 1.04154 1.20651 0.97548 0.92931 0.98942 1.21229 0.99119 0.95931 0.98976 1.21415 0.91562 1.00289 0.97349 1.20358 1.02185 0.88052 1.03245 1.20182 0.89580 0.89885 1.02617 1.83870 1.41553 1.18067 1.66816 1.22133 0.93259 0.91791 0.99181 1.21390 0.99154 0.94662 0.97985 0.93104 0.99291 0.92728 0.93066 0.95784 0.89418 0.93341 0.89071 0.76059 0.80900 0.83879 0.82258 0.81413 0.83525 0.90565 0.96343 0.92086 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 11.37 21.45 0.24 -53.57 16 2 C 0.01 0.64 5.31 84.65 0.45 1.09 16 3 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.16 8.57 25.60 0.22 -29.94 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.04 2.22 2.16 -11.46 -0.02 2.20 16 10 C -0.10 -4.17 5.32 30.64 0.16 -4.00 16 11 C 0.07 2.26 5.46 86.32 0.47 2.73 16 12 N -0.53 -17.90 4.61 -896.37 -4.13 -22.03 16 13 C 0.03 0.81 4.78 86.30 0.41 1.23 16 14 C 0.20 5.00 2.83 29.84 0.08 5.09 16 15 H 0.13 3.32 6.24 -2.39 -0.01 3.30 16 16 O -0.55 -15.29 13.16 -145.43 -1.91 -17.20 16 17 C 0.00 -0.05 6.11 24.72 0.15 0.10 16 18 C -0.20 -4.70 10.99 23.54 0.26 -4.44 16 19 C -0.15 -3.51 6.40 -20.21 -0.13 -3.64 16 20 C -0.08 -1.40 10.05 22.20 0.22 -1.17 16 21 C -0.13 -1.68 9.98 22.04 0.22 -1.46 16 22 C -0.09 -1.08 10.01 22.30 0.22 -0.85 16 23 C -0.12 -2.05 10.07 22.35 0.23 -1.83 16 24 C 0.02 0.57 7.42 22.99 0.17 0.74 16 25 O -0.20 -5.13 10.45 -5.42 -0.06 -5.19 16 26 C 0.06 2.47 5.04 86.33 0.43 2.91 16 27 C -0.09 -4.57 5.12 30.65 0.16 -4.41 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 2.51 8.12 -2.39 -0.02 2.49 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.39 8.65 8.93 -74.06 -0.66 7.99 16 37 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.08 2.73 5.87 -2.39 -0.01 2.72 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 3.35 6.17 -2.39 -0.01 3.33 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.92 362.86 0.21 -67.71 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.33 Total: 19.42 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 3.71 Total: -35.67 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -3.89 Total: -75.60 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.97 Total: -22.39 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.92 0.21 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343896676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.346 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds