Wall clock time and date at job start Fri Apr 10 2020 23:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48499 * 109.46782 * 239.99898 * 3 2 1 5 5 H 1.48497 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47206 * 120.00134 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 181.96622 * 7 2 1 9 9 C 1.50697 * 120.00176 * 1.96536 * 7 2 1 10 10 H 1.09004 * 109.47425 * 175.34690 * 9 7 2 11 11 C 1.50706 * 109.46990 * 55.34300 * 9 7 2 12 12 O 1.21273 * 119.99798 * 239.99999 * 11 9 7 13 13 N 1.34777 * 119.99536 * 60.00295 * 11 9 7 14 14 C 1.46501 * 119.99398 * 179.97438 * 13 11 9 15 15 H 1.09002 * 111.02120 * 30.78518 * 14 13 11 16 16 C 1.55412 * 111.21315 * 266.54514 * 14 13 11 17 17 C 1.54383 * 102.30999 * 208.06928 * 16 14 13 18 18 O 1.43230 * 107.58940 * 21.28005 * 17 16 14 19 19 C 1.43644 * 109.97324 * 1.71713 * 18 17 16 20 20 H 1.09003 * 110.30982 * 94.58351 * 19 18 17 21 21 C 1.53005 * 110.31249 * 216.65291 * 19 18 17 22 22 C 1.52995 * 117.50060 * 228.46285 * 21 19 18 23 23 C 1.53000 * 117.49606 * 297.12512 * 21 19 18 24 24 C 1.50702 * 109.47367 * 295.34728 * 9 7 2 25 25 C 1.38244 * 119.99680 * 346.94264 * 24 9 7 26 26 C 1.38232 * 119.99771 * 179.78971 * 25 24 9 27 27 C 1.38231 * 120.00029 * 0.46049 * 26 25 24 28 28 C 1.38234 * 120.00446 * 359.77431 * 27 26 25 29 29 C 1.38230 * 120.00235 * 167.21862 * 24 9 7 30 30 H 0.97006 * 119.99736 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00360 * 0.02562 * 13 11 9 32 32 H 1.09001 * 110.88217 * 89.82899 * 16 14 13 33 33 H 1.08998 * 110.93329 * 326.32553 * 16 14 13 34 34 H 1.09004 * 109.82759 * 261.76862 * 17 16 14 35 35 H 1.09001 * 109.90841 * 140.84269 * 17 16 14 36 36 H 1.08999 * 115.55023 * 82.78837 * 21 19 18 37 37 H 1.09000 * 117.49868 * 215.00462 * 22 21 19 38 38 H 1.09005 * 117.49947 * 0.02562 * 22 21 19 39 39 H 1.09005 * 117.50080 * 359.97072 * 23 21 19 40 40 H 1.08995 * 117.50075 * 144.99702 * 23 21 19 41 41 H 1.07998 * 119.99551 * 359.97438 * 25 24 9 42 42 H 1.08003 * 119.99782 * 180.25507 * 26 25 24 43 43 H 1.08001 * 120.00161 * 179.78791 * 27 26 25 44 44 H 1.07998 * 120.00509 * 179.97438 * 28 27 26 45 45 H 1.07995 * 120.00313 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0840 -1.1944 0.0326 9 6 1.2516 -2.4988 -0.0436 10 1 1.9594 -3.3243 -0.1198 11 6 0.3359 -2.5101 -1.2405 12 8 -0.8611 -2.6299 -1.0870 13 7 0.8473 -2.3870 -2.4814 14 6 -0.0429 -2.3986 -3.6449 15 1 -1.0180 -1.9802 -3.3953 16 6 -0.1826 -3.8308 -4.2319 17 6 -0.4783 -3.5489 -5.7207 18 8 -0.0117 -2.2264 -6.0118 19 6 0.5949 -1.6518 -4.8434 20 1 1.6729 -1.8125 -4.8589 21 6 0.2830 -0.1560 -4.7640 22 6 1.4509 0.7962 -4.4996 23 6 0.8111 0.7364 -5.8890 24 6 0.4359 -2.6510 1.2143 25 6 0.6648 -1.8156 2.2918 26 6 -0.0864 -1.9523 3.4441 27 6 -1.0599 -2.9306 3.5226 28 6 -1.2855 -3.7692 2.4470 29 6 -0.5372 -3.6296 1.2930 30 1 -0.4850 0.8401 0.0004 31 1 1.8047 -2.2916 -2.6042 32 1 -1.0119 -4.3626 -3.7656 33 1 0.7465 -4.3898 -4.1201 34 1 -1.5512 -3.6108 -5.9027 35 1 0.0451 -4.2718 -6.3464 36 1 -0.6835 0.1003 -4.3300 37 1 1.2529 1.6789 -3.8916 38 1 2.4417 0.3571 -4.3826 39 1 1.3812 0.2580 -6.6854 40 1 0.1922 1.5798 -6.1950 41 1 1.4284 -1.0542 2.2320 42 1 0.0896 -1.2970 4.2844 43 1 -1.6444 -3.0397 4.4241 44 1 -2.0457 -4.5337 2.5084 45 1 -0.7132 -4.2848 0.4528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361646106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:43 Heat of formation + Delta-G solvation = -46.129215 kcal Electronic energy + Delta-G solvation = -27355.424360 eV Core-core repulsion = 23723.815806 eV Total energy + Delta-G solvation = -3631.608554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20914 -40.29683 -38.90328 -37.57936 -35.45798 -35.23429 -32.64718 -31.71067 -31.33759 -29.93853 -28.69505 -25.80085 -24.18597 -23.38024 -22.99757 -22.77486 -21.86887 -21.63066 -20.76703 -18.68774 -18.00868 -17.53472 -17.13436 -16.92498 -16.63854 -16.40381 -15.76458 -15.63480 -15.37342 -15.26803 -14.88584 -14.67196 -14.28287 -13.98186 -13.91606 -13.88500 -13.52336 -13.19215 -12.95846 -12.71984 -12.59069 -12.52913 -12.46148 -12.39277 -12.25046 -11.89577 -11.76954 -11.41254 -11.24846 -11.17224 -11.09271 -10.60137 -10.53124 -10.14972 -9.62735 -9.36745 -9.08497 -8.03921 -6.23275 0.89020 0.94317 1.43424 1.47133 1.51278 2.30292 2.38151 2.48647 2.78598 3.20177 3.23926 3.36532 3.44621 3.64151 3.89884 4.02922 4.08561 4.12279 4.23899 4.32542 4.35238 4.36755 4.46211 4.51238 4.66473 4.73986 4.75813 4.82951 4.85280 4.96156 5.01088 5.02850 5.05080 5.15418 5.17884 5.20758 5.24186 5.47057 5.55909 5.72712 5.85935 5.90682 5.95895 6.00008 6.03821 6.44389 6.54558 6.78052 7.08540 7.45867 7.94429 8.94267 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.005572 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.612471 B = 5024.062808 C = 6691.982043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.048 3.952 3 Si 0.930 3.070 4 H -0.260 1.260 5 H -0.301 1.301 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.048 3.952 10 H 0.069 0.931 11 C 0.555 3.445 12 O -0.582 6.582 13 N -0.710 5.710 14 C 0.127 3.873 15 H 0.062 0.938 16 C -0.163 4.163 17 C 0.054 3.946 18 O -0.385 6.385 19 C 0.120 3.880 20 H 0.087 0.913 21 C -0.168 4.168 22 C -0.169 4.169 23 C -0.148 4.148 24 C -0.034 4.034 25 C -0.087 4.087 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.117 4.117 30 H 0.253 0.747 31 H 0.405 0.595 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -4.692 -7.309 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.157 4.157 3 Si 0.757 3.243 4 H -0.185 1.185 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.027 3.973 10 H 0.087 0.913 11 C 0.345 3.655 12 O -0.461 6.461 13 N -0.362 5.362 14 C 0.020 3.980 15 H 0.080 0.920 16 C -0.202 4.202 17 C -0.022 4.022 18 O -0.304 6.304 19 C 0.062 3.938 20 H 0.105 0.895 21 C -0.186 4.186 22 C -0.206 4.206 23 C -0.185 4.185 24 C -0.035 4.035 25 C -0.105 4.105 26 C -0.171 4.171 27 C -0.160 4.160 28 C -0.165 4.165 29 C -0.136 4.136 30 H 0.062 0.938 31 H 0.240 0.760 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.093 -4.556 -7.409 8.946 hybrid contribution 0.290 1.274 0.353 1.354 sum 2.382 -3.282 -7.056 8.138 Atomic orbital electron populations 1.70222 1.06741 1.26518 1.46852 1.25461 0.94947 1.01244 0.94039 0.86034 0.78636 0.80271 0.79397 1.18453 1.22781 1.19796 1.20822 0.93047 0.89033 1.54312 0.91044 1.17991 0.93052 0.98307 0.87973 0.91330 1.20985 0.88534 0.71528 0.84458 1.90506 1.18112 1.51335 1.86186 1.45416 1.10161 1.76204 1.04432 1.22286 0.94362 0.95333 0.85976 0.92025 1.23486 1.03832 0.97100 0.95789 1.23188 1.00264 0.84138 0.94615 1.88406 1.78584 1.30031 1.33363 1.22490 0.97006 0.90678 0.83645 0.89494 1.22182 0.98822 0.91644 1.05991 1.22926 0.97174 1.00744 0.99797 1.22922 1.02919 1.01161 0.91453 1.19942 0.95418 0.92988 0.95184 1.21122 0.99280 0.97438 0.92634 1.21309 0.97853 0.99601 0.98318 1.21164 0.99092 0.96606 0.99147 1.21191 1.00496 1.00953 0.93865 1.21034 0.96651 0.99032 0.96858 0.93757 0.75965 0.90563 0.88910 0.90783 0.88716 0.90141 0.89956 0.87767 0.87287 0.88064 0.87054 0.85725 0.84565 0.85363 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.23 10.90 21.45 0.23 -46.99 16 2 C 0.05 2.36 4.01 84.65 0.34 2.70 16 3 Si 0.93 39.80 29.54 68.60 2.03 41.82 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.53 -25.18 7.11 25.60 0.18 -25.00 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.05 2.20 2.78 -13.03 -0.04 2.17 16 10 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 11 C 0.56 25.52 5.45 87.66 0.48 26.00 16 12 O -0.58 -30.86 13.59 -3.01 -0.04 -30.90 16 13 N -0.71 -26.76 5.11 -435.47 -2.23 -28.98 16 14 C 0.13 4.36 2.90 46.49 0.13 4.49 16 15 H 0.06 2.62 7.33 -2.39 -0.02 2.60 16 16 C -0.16 -4.42 6.73 31.89 0.21 -4.21 16 17 C 0.05 1.27 7.80 72.45 0.56 1.84 16 18 O -0.38 -10.92 11.01 -148.98 -1.64 -12.56 16 19 C 0.12 3.54 3.27 31.26 0.10 3.65 16 20 H 0.09 2.33 7.81 -2.39 -0.02 2.31 16 21 C -0.17 -5.28 5.46 -10.79 -0.06 -5.34 16 22 C -0.17 -4.95 10.19 30.62 0.31 -4.64 16 23 C -0.15 -3.74 10.22 30.62 0.31 -3.42 16 24 C -0.03 -1.63 4.51 -19.86 -0.09 -1.72 16 25 C -0.09 -4.02 8.21 22.27 0.18 -3.84 16 26 C -0.15 -6.18 10.05 22.27 0.22 -5.95 16 27 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 28 C -0.15 -5.79 10.05 22.27 0.22 -5.56 16 29 C -0.12 -5.28 8.21 22.27 0.18 -5.10 16 30 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 31 H 0.41 13.68 8.45 -92.71 -0.78 12.89 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.93 7.98 -2.39 -0.02 2.92 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.10 2.83 8.08 -2.38 -0.02 2.81 16 39 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.11 5.41 6.04 -2.91 -0.02 5.39 16 42 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 44 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 45 H 0.10 4.50 7.01 -2.91 -0.02 4.48 16 Total: -1.00 -61.88 366.58 2.05 -59.83 By element: Atomic # 1 Polarization: 46.57 SS G_CDS: 0.21 Total: 46.78 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 3.49 Total: -29.00 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.99 Total: -75.98 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.68 Total: -43.46 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -61.88 2.05 -59.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361646106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.702 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds