Wall clock time and date at job start Fri Apr 10 2020 23:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48494 * 109.46908 * 240.00248 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47084 * 119.99957 * 3 2 1 7 7 C 1.37883 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99477 * 185.09382 * 7 2 1 9 9 C 1.50697 * 120.00135 * 5.09612 * 7 2 1 10 10 H 1.08999 * 109.46663 * 185.77355 * 9 7 2 11 11 C 1.50700 * 109.46906 * 305.76962 * 9 7 2 12 12 O 1.21277 * 119.99772 * 120.00480 * 11 9 7 13 13 N 1.34777 * 120.00048 * 300.00079 * 11 9 7 14 14 C 1.47064 * 136.05650 * 359.63062 * 13 11 9 15 15 C 1.53242 * 88.08300 * 207.20376 * 14 13 11 16 16 C 1.53000 * 114.32431 * 220.47194 * 15 14 13 17 17 H 1.08995 * 110.80727 * 37.38984 * 16 15 14 18 18 C 1.54809 * 110.90651 * 273.75545 * 16 15 14 19 19 C 1.54102 * 104.19139 * 220.92441 * 18 16 15 20 20 O 1.43750 * 107.29266 * 357.97164 * 19 18 16 21 21 C 1.44381 * 106.97290 * 26.51367 * 20 19 18 22 22 C 1.47066 * 136.05848 * 180.02562 * 13 11 9 23 23 C 1.50694 * 109.47452 * 65.77035 * 9 7 2 24 24 C 1.38243 * 119.99687 * 355.07827 * 23 9 7 25 25 C 1.38234 * 119.99828 * 179.97438 * 24 23 9 26 26 C 1.38238 * 119.99754 * 359.97431 * 25 24 23 27 27 C 1.38235 * 120.00359 * 0.02562 * 26 25 24 28 28 C 1.38231 * 120.00205 * 175.05661 * 23 9 7 29 29 H 0.97003 * 120.00102 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.46958 * 321.93663 * 14 13 11 31 31 H 1.09001 * 113.46850 * 92.38244 * 14 13 11 32 32 H 1.08999 * 114.19551 * 87.73282 * 15 14 13 33 33 H 1.08997 * 110.49112 * 339.60312 * 18 16 15 34 34 H 1.09000 * 110.48638 * 102.11742 * 18 16 15 35 35 H 1.09001 * 109.87963 * 117.39637 * 19 18 16 36 36 H 1.09003 * 109.88117 * 238.39858 * 19 18 16 37 37 H 1.08998 * 110.61920 * 201.43785 * 21 20 19 38 38 H 1.08997 * 110.61851 * 78.43521 * 21 20 19 39 39 H 1.09001 * 113.46980 * 267.62608 * 22 13 11 40 40 H 1.09000 * 113.46561 * 38.00381 * 22 13 11 41 41 H 1.07994 * 119.99781 * 359.97438 * 24 23 9 42 42 H 1.07996 * 120.00130 * 179.97438 * 25 24 23 43 43 H 1.08008 * 119.99659 * 179.72160 * 26 25 24 44 44 H 1.08005 * 120.00150 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00193 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0813 -1.1960 0.0836 9 6 1.2554 -2.4967 -0.1148 10 1 1.9506 -3.3274 0.0060 11 6 0.1992 -2.5654 0.9580 12 8 -0.9695 -2.6729 0.6523 13 7 0.5534 -2.5074 2.2571 14 6 1.8130 -2.3893 3.0069 15 6 1.1304 -3.1201 4.1681 16 6 1.4675 -2.5592 5.5510 17 1 1.5478 -1.4727 5.5191 18 6 2.7676 -3.1934 6.1025 19 6 2.4642 -3.4415 7.5929 20 8 1.1406 -2.9424 7.8484 21 6 0.4178 -3.0064 6.6002 22 6 -0.1490 -2.5413 3.5487 23 6 0.6014 -2.5818 -1.4698 24 6 0.6631 -1.5061 -2.3358 25 6 0.0636 -1.5843 -3.5790 26 6 -0.5971 -2.7385 -3.9562 27 6 -0.6587 -3.8142 -3.0902 28 6 -0.0598 -3.7357 -1.8468 29 1 -0.4850 0.8401 -0.0004 30 1 2.6355 -2.9519 2.5653 31 1 2.0837 -1.3598 3.2413 32 1 1.2005 -4.2066 4.1150 33 1 2.9786 -4.1343 5.5944 34 1 3.6050 -2.5046 5.9912 35 1 2.5053 -4.5095 7.8067 36 1 3.1884 -2.9117 8.2118 37 1 -0.4295 -2.3209 6.6117 38 1 0.0858 -4.0253 6.4007 39 1 -0.4066 -1.5528 3.9289 40 1 -0.9918 -3.2323 3.5664 41 1 1.1796 -0.6046 -2.0412 42 1 0.1115 -0.7438 -4.2554 43 1 -1.0693 -2.7980 -4.9258 44 1 -1.1753 -4.7158 -3.3848 45 1 -0.1074 -4.5764 -1.1705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362482311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:56 Heat of formation + Delta-G solvation = -31.590738 kcal Electronic energy + Delta-G solvation = -26758.882200 eV Core-core repulsion = 23127.904082 eV Total energy + Delta-G solvation = -3630.978119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43866 -40.32367 -39.51316 -38.12778 -35.57833 -33.58063 -32.70733 -31.35664 -30.78325 -29.56169 -28.29170 -26.79527 -25.70615 -23.90564 -23.00032 -22.89057 -21.86736 -21.04690 -19.86230 -18.67223 -17.49023 -17.37985 -17.19187 -17.02007 -16.70525 -16.23303 -16.03554 -15.68126 -15.40631 -15.26092 -14.74643 -14.51504 -14.12105 -14.10224 -13.79574 -13.71180 -13.61005 -13.45301 -13.06131 -12.73819 -12.68820 -12.60743 -12.43307 -12.25788 -12.19423 -11.90987 -11.81729 -11.53609 -11.47882 -11.20645 -11.12136 -10.57226 -10.54714 -10.16886 -9.47146 -9.29207 -9.13223 -8.12008 -6.29575 0.79322 0.89268 1.39272 1.42893 1.48544 2.19221 2.37036 2.61913 3.04268 3.14847 3.23823 3.29179 3.79338 3.90162 4.08330 4.22049 4.26825 4.30115 4.32320 4.38335 4.43836 4.47323 4.56102 4.58047 4.65226 4.66532 4.78091 4.79976 4.89949 4.92350 4.95351 4.95894 4.98653 5.12236 5.17437 5.27039 5.37842 5.44029 5.46864 5.54492 5.66195 5.82968 5.92400 5.95130 5.98544 6.37952 6.48153 6.75443 7.26300 7.37118 7.89147 8.87870 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.003979 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.663631 B = 7034.826818 C = 8111.843302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.039 3.961 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.056 3.944 10 H 0.061 0.939 11 C 0.581 3.419 12 O -0.594 6.594 13 N -0.655 5.655 14 C 0.125 3.875 15 C -0.086 4.086 16 C -0.103 4.103 17 H 0.083 0.917 18 C -0.145 4.145 19 C 0.042 3.958 20 O -0.405 6.405 21 C 0.052 3.948 22 C 0.102 3.898 23 C -0.044 4.044 24 C -0.087 4.087 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.131 4.131 29 H 0.257 0.743 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -6.774 8.650 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.165 4.165 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.035 3.965 10 H 0.079 0.921 11 C 0.374 3.626 12 O -0.474 6.474 13 N -0.390 5.390 14 C 0.002 3.998 15 C -0.105 4.105 16 C -0.123 4.123 17 H 0.101 0.899 18 C -0.183 4.183 19 C -0.035 4.035 20 O -0.325 6.325 21 C -0.025 4.025 22 C -0.022 4.022 23 C -0.045 4.045 24 C -0.105 4.105 25 C -0.173 4.173 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.081 -6.643 8.443 11.884 hybrid contribution 0.041 1.382 -0.244 1.404 sum 5.122 -5.262 8.199 11.007 Atomic orbital electron populations 1.70238 1.06860 1.26910 1.47406 1.25555 0.95126 1.01721 0.94055 0.85927 0.78612 0.79714 0.79494 1.19196 1.22205 1.18849 1.20837 0.93279 0.89241 1.53147 0.91146 1.17911 0.92421 0.98273 0.87931 0.92118 1.20664 0.89236 0.71281 0.81415 1.90487 1.22274 1.52777 1.81856 1.49486 1.11757 1.74204 1.03559 1.22776 0.88575 0.99965 0.88457 1.22813 0.94539 1.00793 0.92369 1.22572 0.95890 1.00930 0.92865 0.89881 1.22981 0.97556 1.02665 0.95071 1.23320 0.84167 0.99639 0.96330 1.88838 1.25348 1.86104 1.32171 1.23633 0.95069 1.01717 0.82055 1.22933 0.97070 1.00022 0.82130 1.19986 0.95996 0.92982 0.95539 1.21393 0.97908 0.98327 0.92833 1.21374 1.00298 0.98782 0.96871 1.21233 1.00606 0.93415 1.00425 1.21209 1.00920 0.99713 0.94093 1.21047 0.99226 0.97868 0.96771 0.93381 0.90261 0.91252 0.86469 0.89085 0.89490 0.91406 0.89111 0.88969 0.91019 0.91553 0.91917 0.86592 0.85784 0.84079 0.84507 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.24 10.41 21.45 0.22 -49.02 16 2 C 0.04 1.97 3.19 84.66 0.27 2.24 16 3 Si 0.94 40.42 29.54 68.60 2.03 42.45 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.53 -25.97 7.13 25.60 0.18 -25.79 16 8 H 0.07 3.32 7.82 -2.91 -0.02 3.30 16 9 C 0.06 2.72 2.55 -13.04 -0.03 2.69 16 10 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 11 C 0.58 29.21 5.62 87.66 0.49 29.70 16 12 O -0.59 -34.51 15.92 -3.02 -0.05 -34.55 16 13 N -0.65 -26.91 3.64 -858.88 -3.12 -30.03 16 14 C 0.13 3.89 7.40 83.09 0.61 4.50 16 15 C -0.09 -2.02 3.35 -10.55 -0.04 -2.05 16 16 C -0.10 -2.00 2.89 -9.49 -0.03 -2.03 16 17 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 18 C -0.15 -2.21 6.60 31.58 0.21 -2.00 16 19 C 0.04 0.67 7.70 72.35 0.56 1.23 16 20 O -0.40 -9.01 11.52 -148.98 -1.72 -10.72 16 21 C 0.05 1.01 6.95 72.67 0.51 1.51 16 22 C 0.10 3.31 7.97 83.17 0.66 3.98 16 23 C -0.04 -2.18 4.50 -19.87 -0.09 -2.26 16 24 C -0.09 -4.23 8.00 22.27 0.18 -4.05 16 25 C -0.16 -6.48 10.05 22.27 0.22 -6.26 16 26 C -0.14 -5.17 10.05 22.27 0.22 -4.94 16 27 C -0.14 -5.46 10.05 22.27 0.22 -5.24 16 28 C -0.13 -5.87 8.73 22.27 0.19 -5.67 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 32 H 0.12 2.41 8.06 -2.39 -0.02 2.39 16 33 H 0.09 1.19 7.80 -2.39 -0.02 1.17 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 39 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.12 6.02 4.97 -2.91 -0.01 6.01 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -68.96 363.48 2.68 -66.28 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.97 Total: 30.05 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.35 Total: -14.46 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.90 Total: -79.05 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.76 Total: -45.28 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -68.96 2.68 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362482311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.688 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds