Wall clock time and date at job start Fri Apr 10 2020 23:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47514 * 264.82082 * 3 2 1 5 5 H 1.48505 * 109.47059 * 24.82232 * 3 2 1 6 6 H 1.48498 * 109.47098 * 144.81803 * 3 2 1 7 7 C 1.37879 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 2.10487 * 7 2 1 9 9 C 1.50701 * 120.00102 * 182.11197 * 7 2 1 10 10 H 1.09004 * 109.47107 * 35.02887 * 9 7 2 11 11 C 1.50690 * 109.47252 * 155.02894 * 9 7 2 12 12 O 1.21288 * 120.00196 * 119.72580 * 11 9 7 13 13 N 1.34771 * 120.00500 * 299.99589 * 11 9 7 14 14 C 1.47071 * 136.05549 * 359.36092 * 13 11 9 15 15 C 1.53231 * 88.08341 * 207.19878 * 14 13 11 16 16 C 1.53006 * 114.32566 * 220.46875 * 15 14 13 17 17 H 1.09002 * 110.45683 * 31.14984 * 16 15 14 18 18 C 1.54507 * 110.51044 * 153.76106 * 16 15 14 19 19 C 1.54473 * 104.06340 * 118.64522 * 18 16 15 20 20 O 1.44423 * 104.80587 * 23.97653 * 19 18 16 21 21 C 1.44430 * 105.27584 * 319.49042 * 20 19 18 22 22 C 1.47070 * 136.06307 * 179.72427 * 13 11 9 23 23 C 1.50701 * 109.46780 * 275.03066 * 9 7 2 24 24 C 1.38231 * 120.00122 * 306.31431 * 23 9 7 25 25 C 1.38238 * 119.99948 * 179.74739 * 24 23 9 26 26 C 1.38238 * 119.99959 * 0.52784 * 25 24 23 27 27 C 1.38233 * 119.99687 * 359.74730 * 26 25 24 28 28 C 1.38231 * 120.00328 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99823 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.46629 * 321.93557 * 14 13 11 31 31 H 1.08999 * 113.46979 * 92.36928 * 14 13 11 32 32 H 1.09005 * 114.19749 * 87.72744 * 15 14 13 33 33 H 1.09006 * 110.50945 * 237.28944 * 18 16 15 34 34 H 1.09001 * 110.51398 * 359.97438 * 18 16 15 35 35 H 1.08998 * 110.37461 * 142.80761 * 19 18 16 36 36 H 1.09005 * 110.37544 * 265.03766 * 19 18 16 37 37 H 1.09003 * 110.36521 * 281.67977 * 21 20 19 38 38 H 1.08992 * 110.37260 * 159.34159 * 21 20 19 39 39 H 1.09003 * 113.46789 * 267.62750 * 22 13 11 40 40 H 1.08992 * 113.46500 * 38.00816 * 22 13 11 41 41 H 1.08001 * 120.00128 * 359.97438 * 24 23 9 42 42 H 1.08001 * 119.99689 * 180.29981 * 25 24 23 43 43 H 1.07996 * 120.00066 * 179.77218 * 26 25 24 44 44 H 1.08004 * 119.99778 * 180.02562 * 27 26 25 45 45 H 1.08004 * 119.99971 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3963 2.6818 0.5878 6 1 3.4877 1.4741 0.8067 7 6 2.0045 -1.1941 -0.0005 8 1 1.4650 -2.1291 -0.0353 9 6 3.5107 -1.1947 0.0476 10 1 3.8549 -0.3646 0.6645 11 6 3.9940 -2.4939 0.6386 12 8 4.7080 -3.2276 -0.0116 13 7 3.6283 -2.8432 1.8879 14 6 2.8124 -2.2491 2.9576 15 6 3.6603 -3.0298 3.9674 16 6 2.8633 -3.6357 5.1245 17 1 1.8563 -3.8959 4.7984 18 6 3.5878 -4.8783 5.6887 19 6 3.8893 -4.5028 7.1565 20 8 2.9080 -3.4967 7.4890 21 6 2.8128 -2.6564 6.3181 22 6 3.8748 -3.9832 2.7838 23 6 4.0579 -1.0436 -1.3485 24 6 3.6512 -1.9080 -2.3475 25 6 4.1491 -1.7661 -3.6293 26 6 5.0621 -0.7666 -3.9094 27 6 5.4731 0.0942 -2.9090 28 6 4.9708 -0.0441 -1.6286 29 1 -0.4850 0.8400 0.0004 30 1 2.9264 -1.1683 3.0410 31 1 1.7688 -2.5627 2.9326 32 1 4.5616 -2.5093 4.2911 33 1 2.9381 -5.7524 5.6438 34 1 4.5135 -5.0613 5.1430 35 1 3.7739 -5.3733 7.8022 36 1 4.8968 -4.0964 7.2450 37 1 3.6546 -1.9651 6.2778 38 1 1.8705 -2.1086 6.3199 39 1 3.1170 -4.7635 2.7120 40 1 4.8900 -4.3746 2.7189 41 1 2.9416 -2.6919 -2.1276 42 1 3.8276 -2.4385 -4.4110 43 1 5.4539 -0.6581 -4.9100 44 1 6.1860 0.8754 -3.1280 45 1 5.2923 0.6283 -0.8469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362482314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:59 Heat of formation + Delta-G solvation = -19.929265 kcal Electronic energy + Delta-G solvation = -26464.629197 eV Core-core repulsion = 22834.156758 eV Total energy + Delta-G solvation = -3630.472439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44764 -39.19394 -38.38985 -36.94651 -33.65725 -32.67271 -31.49591 -30.14024 -29.82628 -28.57736 -27.07798 -25.65377 -23.72554 -22.92709 -22.24350 -21.84002 -20.71919 -19.87591 -18.32523 -17.14925 -16.54709 -16.38454 -16.15287 -16.06908 -15.31518 -15.08850 -14.71850 -14.47947 -14.30233 -13.81940 -13.60470 -13.21343 -12.87779 -12.82365 -12.67890 -12.51645 -12.32698 -12.12066 -11.93944 -11.78021 -11.64864 -11.39340 -11.20561 -10.98519 -10.94784 -10.63753 -10.48666 -10.27424 -10.15793 -9.93688 -9.90268 -9.55102 -8.95037 -8.74085 -8.14280 -8.11871 -7.82574 -6.30707 -4.34705 2.13843 2.20474 3.15431 3.22799 3.28392 3.37638 3.60294 3.87808 4.15939 4.22537 4.59804 4.60523 4.71630 4.92358 4.96264 5.00543 5.08305 5.27410 5.33039 5.42916 5.53642 5.56894 5.58991 5.62287 5.64546 5.71008 5.73186 5.73883 5.83156 5.87110 5.93663 6.06463 6.08179 6.27223 6.31276 6.41170 6.48163 6.50785 6.65780 6.76720 6.84939 7.16183 7.24754 7.26861 7.59037 7.79621 8.18739 8.38165 8.67501 9.01266 9.27491 10.80179 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003904 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.394863 B = 7170.296604 C = 8153.238989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.088 3.912 3 Si 0.863 3.137 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.028 3.972 10 H 0.068 0.932 11 C 0.567 3.433 12 O -0.559 6.559 13 N -0.639 5.639 14 C 0.126 3.874 15 C -0.128 4.128 16 C -0.108 4.108 17 H 0.091 0.909 18 C -0.151 4.151 19 C 0.044 3.956 20 O -0.379 6.379 21 C 0.049 3.951 22 C 0.110 3.890 23 C -0.031 4.031 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.268 0.732 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 -4.567 9.033 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.690 3.310 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.006 3.994 10 H 0.086 0.914 11 C 0.359 3.641 12 O -0.437 6.437 13 N -0.374 5.374 14 C 0.002 3.998 15 C -0.147 4.147 16 C -0.127 4.127 17 H 0.109 0.891 18 C -0.188 4.188 19 C -0.033 4.033 20 O -0.298 6.298 21 C -0.027 4.027 22 C -0.013 4.013 23 C -0.032 4.032 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.155 4.155 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.270 -4.741 8.626 12.237 hybrid contribution 0.333 0.968 -0.376 1.091 sum 7.602 -3.773 8.250 11.837 Atomic orbital electron populations 1.69852 1.06109 1.27433 1.48588 1.24890 0.94648 0.98627 0.93489 0.87056 0.80141 0.83943 0.79877 1.18997 1.21186 1.18838 1.20450 0.85878 0.95129 1.52935 0.90200 1.18470 0.98535 0.92204 0.90166 0.91403 1.20701 0.77553 0.88409 0.77425 1.90612 1.39030 1.55256 1.58827 1.49355 1.51523 1.22636 1.13916 1.22800 0.95700 0.99439 0.81817 1.23118 0.99907 0.98681 0.92954 1.22470 1.00253 0.94975 0.95038 0.89051 1.22998 1.01509 0.98379 0.95953 1.23400 0.92471 0.91847 0.95544 1.89119 1.60799 1.43005 1.36874 1.23530 1.02593 0.93119 0.83482 1.22839 1.01361 0.91261 0.85847 1.20105 0.92575 0.93611 0.96952 1.20855 0.97904 0.98238 0.91885 1.21045 0.98343 0.98624 0.96763 1.20870 0.99670 0.97046 0.98419 1.20881 1.00781 0.99575 0.93489 1.20986 0.98361 0.99543 0.96643 0.92155 0.90462 0.89453 0.88037 0.90550 0.90138 0.89412 0.92423 0.91962 0.88704 0.90466 0.91252 0.86446 0.87052 0.87265 0.87227 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.96 55.43 0.77 -23.97 16 2 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.86 20.09 26.09 -169.99 -4.43 15.66 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.73 6.15 56.52 0.35 -5.38 16 7 C -0.51 -12.95 7.55 -34.44 -0.26 -13.21 16 8 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 9 C 0.03 0.64 1.76 -94.08 -0.17 0.47 16 10 H 0.07 1.55 5.38 -51.93 -0.28 1.27 16 11 C 0.57 12.65 7.29 -10.99 -0.08 12.57 16 12 O -0.56 -13.72 16.20 5.55 0.09 -13.63 16 13 N -0.64 -11.78 3.64 -185.40 -0.67 -12.45 16 14 C 0.13 1.93 7.40 -8.65 -0.06 1.86 16 15 C -0.13 -1.46 3.35 -90.24 -0.30 -1.77 16 16 C -0.11 -1.06 2.99 -89.05 -0.27 -1.32 16 17 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 18 C -0.15 -1.28 6.44 -25.17 -0.16 -1.44 16 19 C 0.04 0.39 7.63 37.93 0.29 0.67 16 20 O -0.38 -4.35 11.65 -35.23 -0.41 -4.76 16 21 C 0.05 0.49 7.18 37.93 0.27 0.77 16 22 C 0.11 1.54 7.42 -8.51 -0.06 1.47 16 23 C -0.03 -0.72 3.64 -104.62 -0.38 -1.10 16 24 C -0.07 -1.58 8.31 -39.58 -0.33 -1.91 16 25 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 26 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 27 C -0.13 -2.39 10.05 -39.59 -0.40 -2.78 16 28 C -0.14 -2.86 8.68 -39.58 -0.34 -3.20 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 32 H 0.10 1.10 7.92 -51.93 -0.41 0.69 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.64 7.33 -51.93 -0.38 0.26 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.58 7.72 -51.93 -0.40 0.18 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.12 2.72 7.89 -52.49 -0.41 2.31 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.11 2.09 7.96 -52.48 -0.42 1.67 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -31.32 364.69 -9.27 -40.59 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.96 Total: 5.60 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.15 Total: -12.52 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.10 Total: -36.42 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.32 Total: -18.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.43 Total: 15.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.32 -9.27 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362482314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.657 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds