Wall clock time and date at job start Fri Apr 10 2020 23:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47514 * 264.82082 * 3 2 1 5 5 H 1.48505 * 109.47059 * 24.82232 * 3 2 1 6 6 H 1.48498 * 109.47098 * 144.81803 * 3 2 1 7 7 C 1.37879 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 2.10487 * 7 2 1 9 9 C 1.50701 * 120.00102 * 182.11197 * 7 2 1 10 10 H 1.09004 * 109.47107 * 35.02887 * 9 7 2 11 11 C 1.50690 * 109.47252 * 155.02894 * 9 7 2 12 12 O 1.21288 * 120.00196 * 119.72580 * 11 9 7 13 13 N 1.34771 * 120.00500 * 299.99589 * 11 9 7 14 14 C 1.47071 * 136.05549 * 359.36092 * 13 11 9 15 15 C 1.53231 * 88.08341 * 207.19878 * 14 13 11 16 16 C 1.53006 * 114.32566 * 220.46875 * 15 14 13 17 17 H 1.09002 * 110.45683 * 31.14984 * 16 15 14 18 18 C 1.54507 * 110.51044 * 153.76106 * 16 15 14 19 19 C 1.54473 * 104.06340 * 118.64522 * 18 16 15 20 20 O 1.44423 * 104.80587 * 23.97653 * 19 18 16 21 21 C 1.44430 * 105.27584 * 319.49042 * 20 19 18 22 22 C 1.47070 * 136.06307 * 179.72427 * 13 11 9 23 23 C 1.50701 * 109.46780 * 275.03066 * 9 7 2 24 24 C 1.38231 * 120.00122 * 306.31431 * 23 9 7 25 25 C 1.38238 * 119.99948 * 179.74739 * 24 23 9 26 26 C 1.38238 * 119.99959 * 0.52784 * 25 24 23 27 27 C 1.38233 * 119.99687 * 359.74730 * 26 25 24 28 28 C 1.38231 * 120.00328 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99823 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.46629 * 321.93557 * 14 13 11 31 31 H 1.08999 * 113.46979 * 92.36928 * 14 13 11 32 32 H 1.09005 * 114.19749 * 87.72744 * 15 14 13 33 33 H 1.09006 * 110.50945 * 237.28944 * 18 16 15 34 34 H 1.09001 * 110.51398 * 359.97438 * 18 16 15 35 35 H 1.08998 * 110.37461 * 142.80761 * 19 18 16 36 36 H 1.09005 * 110.37544 * 265.03766 * 19 18 16 37 37 H 1.09003 * 110.36521 * 281.67977 * 21 20 19 38 38 H 1.08992 * 110.37260 * 159.34159 * 21 20 19 39 39 H 1.09003 * 113.46789 * 267.62750 * 22 13 11 40 40 H 1.08992 * 113.46500 * 38.00816 * 22 13 11 41 41 H 1.08001 * 120.00128 * 359.97438 * 24 23 9 42 42 H 1.08001 * 119.99689 * 180.29981 * 25 24 23 43 43 H 1.07996 * 120.00066 * 179.77218 * 26 25 24 44 44 H 1.08004 * 119.99778 * 180.02562 * 27 26 25 45 45 H 1.08004 * 119.99971 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3963 2.6818 0.5878 6 1 3.4877 1.4741 0.8067 7 6 2.0045 -1.1941 -0.0005 8 1 1.4650 -2.1291 -0.0353 9 6 3.5107 -1.1947 0.0476 10 1 3.8549 -0.3646 0.6645 11 6 3.9940 -2.4939 0.6386 12 8 4.7080 -3.2276 -0.0116 13 7 3.6283 -2.8432 1.8879 14 6 2.8124 -2.2491 2.9576 15 6 3.6603 -3.0298 3.9674 16 6 2.8633 -3.6357 5.1245 17 1 1.8563 -3.8959 4.7984 18 6 3.5878 -4.8783 5.6887 19 6 3.8893 -4.5028 7.1565 20 8 2.9080 -3.4967 7.4890 21 6 2.8128 -2.6564 6.3181 22 6 3.8748 -3.9832 2.7838 23 6 4.0579 -1.0436 -1.3485 24 6 3.6512 -1.9080 -2.3475 25 6 4.1491 -1.7661 -3.6293 26 6 5.0621 -0.7666 -3.9094 27 6 5.4731 0.0942 -2.9090 28 6 4.9708 -0.0441 -1.6286 29 1 -0.4850 0.8400 0.0004 30 1 2.9264 -1.1683 3.0410 31 1 1.7688 -2.5627 2.9326 32 1 4.5616 -2.5093 4.2911 33 1 2.9381 -5.7524 5.6438 34 1 4.5135 -5.0613 5.1430 35 1 3.7739 -5.3733 7.8022 36 1 4.8968 -4.0964 7.2450 37 1 3.6546 -1.9651 6.2778 38 1 1.8705 -2.1086 6.3199 39 1 3.1170 -4.7635 2.7120 40 1 4.8900 -4.3746 2.7189 41 1 2.9416 -2.6919 -2.1276 42 1 3.8276 -2.4385 -4.4110 43 1 5.4539 -0.6581 -4.9100 44 1 6.1860 0.8754 -3.1280 45 1 5.2923 0.6283 -0.8469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362482314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:10:58 Heat of formation + Delta-G solvation = -38.929353 kcal Electronic energy + Delta-G solvation = -26465.453103 eV Core-core repulsion = 22834.156758 eV Total energy + Delta-G solvation = -3631.296345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68828 -40.49792 -39.63740 -38.45980 -35.54012 -33.69876 -33.31118 -31.67146 -30.78694 -29.89027 -28.55118 -26.90358 -25.49475 -23.91499 -23.41059 -23.22501 -22.11895 -20.89194 -19.82382 -19.11599 -17.99280 -17.63042 -17.29621 -17.13065 -16.73821 -16.32385 -16.14139 -15.92890 -15.62869 -15.20580 -14.89107 -14.68663 -14.50020 -14.20490 -14.07001 -13.77234 -13.70738 -13.50336 -13.46498 -13.05115 -12.79570 -12.73896 -12.55222 -12.24957 -12.09368 -12.04423 -11.93581 -11.64787 -11.46626 -11.41276 -11.22286 -10.89662 -10.67876 -10.54226 -9.68388 -9.60612 -9.41309 -8.35908 -6.43014 0.59509 0.65832 1.29203 1.37084 1.40229 1.73281 2.12432 2.28100 2.95000 3.06077 3.12019 3.18186 3.73161 3.83747 3.98916 4.03850 4.11301 4.17043 4.18262 4.25327 4.29146 4.34974 4.45511 4.46634 4.52635 4.56961 4.58941 4.69448 4.74755 4.77593 4.87195 4.89211 4.93389 4.96947 5.04507 5.17534 5.19359 5.23999 5.28283 5.36670 5.38934 5.65580 5.69918 5.91644 5.92615 6.17336 6.26614 6.55636 6.81763 7.21265 7.32879 8.78445 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003904 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.394863 B = 7170.296604 C = 8153.238989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.492 4.492 8 H 0.035 0.965 9 C 0.031 3.969 10 H 0.071 0.929 11 C 0.557 3.443 12 O -0.590 6.590 13 N -0.650 5.650 14 C 0.116 3.884 15 C -0.090 4.090 16 C -0.104 4.104 17 H 0.087 0.913 18 C -0.146 4.146 19 C 0.040 3.960 20 O -0.402 6.402 21 C 0.048 3.952 22 C 0.106 3.894 23 C -0.059 4.059 24 C -0.103 4.103 25 C -0.133 4.133 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.154 4.154 29 H 0.270 0.730 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.588 -3.664 9.257 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.157 4.157 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.010 3.990 10 H 0.089 0.911 11 C 0.349 3.651 12 O -0.472 6.472 13 N -0.383 5.383 14 C -0.007 4.007 15 C -0.109 4.109 16 C -0.123 4.123 17 H 0.105 0.895 18 C -0.184 4.184 19 C -0.036 4.036 20 O -0.321 6.321 21 C -0.029 4.029 22 C -0.016 4.016 23 C -0.060 4.060 24 C -0.121 4.121 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.143 4.143 28 C -0.172 4.172 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.154 0.846 43 H 0.170 0.830 44 H 0.168 0.832 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.731 -3.856 8.902 13.741 hybrid contribution -0.447 0.573 -0.475 0.869 sum 9.284 -3.282 8.427 12.961 Atomic orbital electron populations 1.69974 1.07738 1.28282 1.50673 1.25537 0.95184 1.01743 0.93272 0.86209 0.79992 0.79927 0.79945 1.19370 1.20783 1.16209 1.20313 0.87425 0.93283 1.51929 0.94654 1.18371 0.96458 0.92982 0.91225 0.91103 1.20571 0.77767 0.88203 0.78566 1.90566 1.40674 1.55898 1.60040 1.49525 1.50943 1.24612 1.13260 1.23006 0.95742 0.99731 0.82236 1.22916 0.99479 0.96461 0.92079 1.22409 0.99935 0.95753 0.94233 0.89476 1.22990 1.01846 0.97676 0.95899 1.23574 0.92437 0.91855 0.95734 1.89102 1.61711 1.43805 1.37472 1.23571 1.03082 0.93116 0.83085 1.23122 1.02145 0.90877 0.85465 1.20126 0.94421 0.95109 0.96374 1.20829 0.98994 0.98490 0.93828 1.21378 0.98255 0.99557 0.95944 1.21369 0.98127 0.95453 1.00332 1.21382 1.00434 1.00108 0.92369 1.21249 0.98324 0.99205 0.98442 0.92094 0.90903 0.90330 0.86446 0.89920 0.89191 0.88109 0.91380 0.91058 0.88718 0.89630 0.90441 0.89387 0.84640 0.82997 0.83247 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 2 C 0.04 2.33 5.47 84.65 0.46 2.80 16 3 Si 0.92 41.36 26.09 68.60 1.79 43.15 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -9.70 6.15 99.48 0.61 -9.09 16 7 C -0.49 -26.39 7.55 25.60 0.19 -26.19 16 8 H 0.04 2.16 8.05 -2.91 -0.02 2.13 16 9 C 0.03 1.46 1.76 -13.03 -0.02 1.44 16 10 H 0.07 3.23 5.38 -2.38 -0.01 3.22 16 11 C 0.56 25.70 7.29 87.65 0.64 26.34 16 12 O -0.59 -29.95 16.20 -3.05 -0.05 -30.00 16 13 N -0.65 -24.41 3.64 -858.86 -3.12 -27.53 16 14 C 0.12 3.58 7.40 83.09 0.62 4.19 16 15 C -0.09 -1.95 3.35 -10.55 -0.04 -1.99 16 16 C -0.10 -1.87 2.99 -9.78 -0.03 -1.90 16 17 H 0.09 1.68 7.91 -2.39 -0.02 1.66 16 18 C -0.15 -2.15 6.44 31.61 0.20 -1.94 16 19 C 0.04 0.61 7.63 72.48 0.55 1.16 16 20 O -0.40 -8.53 11.65 -148.98 -1.74 -10.26 16 21 C 0.05 0.88 7.18 72.49 0.52 1.40 16 22 C 0.11 2.88 7.42 83.17 0.62 3.50 16 23 C -0.06 -2.74 3.64 -19.87 -0.07 -2.81 16 24 C -0.10 -4.74 8.31 22.27 0.19 -4.55 16 25 C -0.13 -5.00 10.05 22.27 0.22 -4.78 16 26 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 28 C -0.15 -6.15 8.68 22.27 0.19 -5.96 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.08 2.56 7.93 -2.39 -0.02 2.54 16 32 H 0.12 2.25 7.92 -2.38 -0.02 2.23 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.17 7.33 -2.39 -0.02 1.15 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.18 7.72 -2.39 -0.02 1.16 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 4.41 7.89 -2.91 -0.02 4.39 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 45 H 0.12 4.37 7.96 -2.91 -0.02 4.34 16 Total: -1.00 -71.13 364.69 2.75 -68.38 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.87 Total: 27.33 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.69 Total: -17.38 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.82 Total: -81.21 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.79 Total: -40.26 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.79 Total: 43.15 kcal Total: -71.13 2.75 -68.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362482314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.450 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds