Wall clock time and date at job start Fri Apr 10 2020 23:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47614 * 240.00001 * 3 2 1 5 5 H 1.48507 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46985 * 119.99671 * 3 2 1 7 7 C 1.37878 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99710 * 185.10987 * 7 2 1 9 9 C 1.50698 * 119.99531 * 5.10874 * 7 2 1 10 10 H 1.09000 * 109.47521 * 334.89402 * 9 7 2 11 11 C 1.50706 * 109.46727 * 214.89725 * 9 7 2 12 12 O 1.21287 * 119.99672 * 240.00185 * 11 9 7 13 13 N 1.34772 * 120.00177 * 60.00022 * 11 9 7 14 14 C 1.47065 * 136.05907 * 359.62767 * 13 11 9 15 15 C 1.53235 * 88.08656 * 207.20248 * 14 13 11 16 16 C 1.52998 * 114.33191 * 220.46980 * 15 14 13 17 17 H 1.09004 * 110.45253 * 31.15264 * 16 15 14 18 18 C 1.54507 * 110.51176 * 153.75804 * 16 15 14 19 19 C 1.54483 * 104.05970 * 118.65023 * 18 16 15 20 20 O 1.44428 * 104.80437 * 23.97334 * 19 18 16 21 21 C 1.44424 * 105.27756 * 319.49175 * 20 19 18 22 22 C 1.47068 * 136.05829 * 179.97438 * 13 11 9 23 23 C 1.50698 * 109.47243 * 94.89792 * 9 7 2 24 24 C 1.38235 * 119.99803 * 233.74324 * 23 9 7 25 25 C 1.38236 * 119.99669 * 180.02562 * 24 23 9 26 26 C 1.38235 * 120.00396 * 359.97438 * 25 24 23 27 27 C 1.38240 * 119.99573 * 0.02562 * 26 25 24 28 28 C 1.38226 * 120.00010 * 0.02562 * 27 26 25 29 29 H 0.97009 * 120.00008 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.47022 * 321.94006 * 14 13 11 31 31 H 1.09001 * 113.46971 * 92.37353 * 14 13 11 32 32 H 1.09007 * 114.19653 * 87.72730 * 15 14 13 33 33 H 1.09001 * 110.50746 * 237.28655 * 18 16 15 34 34 H 1.08996 * 110.51411 * 0.02562 * 18 16 15 35 35 H 1.09000 * 110.37356 * 142.81246 * 19 18 16 36 36 H 1.09005 * 110.36673 * 265.03547 * 19 18 16 37 37 H 1.09002 * 110.37320 * 281.68139 * 21 20 19 38 38 H 1.08993 * 110.37106 * 159.34258 * 21 20 19 39 39 H 1.09004 * 113.46873 * 267.62667 * 22 13 11 40 40 H 1.09008 * 113.46437 * 38.00432 * 22 13 11 41 41 H 1.07994 * 120.00160 * 359.97438 * 24 23 9 42 42 H 1.08002 * 119.99890 * 179.70113 * 25 24 23 43 43 H 1.07992 * 120.00241 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.99343 * 179.97438 * 27 26 25 45 45 H 1.08006 * 119.99967 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1957 0.0838 9 6 1.2555 -2.4965 -0.1151 10 1 0.2370 -2.3637 0.2497 11 6 1.9504 -3.5504 0.7082 12 8 2.3749 -4.5538 0.1754 13 7 2.1002 -3.3777 2.0364 14 6 1.7458 -2.3395 3.0159 15 6 2.9327 -2.8076 3.8646 16 6 2.6545 -2.8498 5.3685 17 1 1.6051 -3.0780 5.5555 18 6 3.5659 -3.8890 6.0587 19 6 4.4003 -3.0536 7.0549 20 8 3.6013 -1.8779 7.3104 21 6 3.0460 -1.5094 6.0291 22 6 2.6954 -4.1417 3.1431 23 6 1.2198 -2.9291 -1.5582 24 6 0.0111 -3.2192 -2.1631 25 6 -0.0215 -3.6165 -3.4867 26 6 1.1544 -3.7232 -4.2056 27 6 2.3630 -3.4331 -3.6007 28 6 2.3958 -3.0368 -2.2768 29 1 -0.4850 0.8401 -0.0004 30 1 1.8604 -1.3250 2.6340 31 1 0.7795 -2.5042 3.4926 32 1 3.8781 -2.3260 3.6147 33 1 2.9673 -4.6296 6.5891 34 1 4.2151 -4.3725 5.3287 35 1 4.5602 -3.6116 7.9775 36 1 5.3558 -2.7757 6.6099 37 1 3.7929 -0.9930 5.4261 38 1 2.1655 -0.8812 6.1638 39 1 1.9844 -4.7911 3.6541 40 1 3.6155 -4.6578 2.8688 41 1 -0.9075 -3.1363 -1.6014 42 1 -0.9654 -3.8478 -3.9580 43 1 1.1288 -4.0340 -5.2396 44 1 3.2817 -3.5169 -4.1622 45 1 3.3401 -2.8106 -1.8040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362482317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:01 Heat of formation + Delta-G solvation = -41.479978 kcal Electronic energy + Delta-G solvation = -26465.031042 eV Core-core repulsion = 22833.624094 eV Total energy + Delta-G solvation = -3631.406948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61307 -40.39114 -39.57169 -38.38208 -35.52919 -33.64765 -32.88655 -31.57668 -30.73654 -29.74385 -28.36193 -26.81431 -25.72078 -23.90475 -23.29385 -23.17629 -22.04780 -20.88797 -19.85091 -18.64682 -17.83232 -17.51587 -17.30076 -17.04154 -16.71889 -16.21837 -16.09392 -15.93575 -15.50921 -15.34077 -14.88487 -14.50074 -14.27138 -14.06933 -13.91547 -13.70187 -13.46607 -13.37198 -13.32326 -12.92932 -12.80223 -12.76292 -12.54358 -12.25049 -12.20940 -12.00335 -11.92218 -11.66242 -11.41358 -11.31557 -11.18806 -10.72228 -10.68728 -10.38723 -9.60801 -9.52814 -9.29647 -8.21922 -6.31286 0.71328 0.75987 1.40406 1.43626 1.49462 1.89447 2.13976 2.40955 3.05923 3.10108 3.19693 3.23084 3.75191 3.88189 4.03089 4.10866 4.18035 4.23363 4.26233 4.27207 4.39930 4.45788 4.49455 4.50108 4.56019 4.56713 4.70473 4.83621 4.85413 4.92493 4.92547 4.93435 4.97546 5.09177 5.15518 5.21499 5.23206 5.37587 5.39682 5.41949 5.62061 5.74758 5.79609 5.91135 5.92251 6.20296 6.37453 6.71327 6.89776 7.33797 7.45124 8.86434 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.004096 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.038083 B = 6834.325804 C = 8151.847315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.040 3.960 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.047 0.953 9 C 0.059 3.941 10 H 0.065 0.935 11 C 0.548 3.452 12 O -0.600 6.600 13 N -0.648 5.648 14 C 0.110 3.890 15 C -0.093 4.093 16 C -0.100 4.100 17 H 0.097 0.903 18 C -0.146 4.146 19 C 0.039 3.961 20 O -0.400 6.400 21 C 0.046 3.954 22 C 0.106 3.894 23 C -0.043 4.043 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.111 4.111 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -4.803 8.999 10.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.038 3.962 10 H 0.083 0.917 11 C 0.341 3.659 12 O -0.482 6.482 13 N -0.381 5.381 14 C -0.013 4.013 15 C -0.113 4.113 16 C -0.119 4.119 17 H 0.115 0.885 18 C -0.183 4.183 19 C -0.037 4.037 20 O -0.319 6.319 21 C -0.030 4.030 22 C -0.016 4.016 23 C -0.044 4.044 24 C -0.163 4.163 25 C -0.146 4.146 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.129 4.129 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.155 0.845 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.058 -5.122 8.705 10.885 hybrid contribution 0.238 0.973 -0.364 1.066 sum 4.296 -4.149 8.341 10.259 Atomic orbital electron populations 1.69965 1.07017 1.28015 1.49229 1.25490 0.95450 1.01680 0.93578 0.85796 0.78702 0.79322 0.79094 1.20613 1.20669 1.18493 1.20544 0.92355 0.89270 1.52291 0.93467 1.17926 0.98030 0.92053 0.88165 0.91688 1.21161 0.77716 0.86299 0.80683 1.90543 1.53453 1.32564 1.71680 1.49448 1.59241 1.24757 1.04696 1.23074 0.98312 0.93822 0.86078 1.22853 0.98849 0.96119 0.93430 1.22402 1.01797 0.95830 0.91895 0.88497 1.22992 0.98564 0.98183 0.98605 1.23583 0.94155 0.85797 1.00207 1.89094 1.66611 1.46387 1.29828 1.23564 0.98907 0.96426 0.84117 1.23136 0.98257 0.95700 0.84493 1.20173 0.93342 0.93728 0.97114 1.21149 0.97025 1.01630 0.96503 1.21320 0.99404 1.00181 0.93685 1.21296 0.91933 1.01962 1.00772 1.21343 0.99190 1.00311 0.94390 1.20843 0.97288 0.99862 0.94917 0.92294 0.91025 0.89243 0.88085 0.89286 0.89580 0.87816 0.91964 0.92038 0.88409 0.88547 0.91367 0.87557 0.84034 0.83299 0.84526 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.26 12.77 21.45 0.27 -47.99 16 2 C 0.04 2.04 5.45 84.66 0.46 2.50 16 3 Si 0.95 40.74 29.54 68.60 2.03 42.76 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.51 -26.12 6.25 25.60 0.16 -25.96 16 8 H 0.05 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.06 3.00 2.33 -13.03 -0.03 2.97 16 10 H 0.07 3.56 6.99 -2.39 -0.02 3.54 16 11 C 0.55 26.44 7.29 87.66 0.64 27.08 16 12 O -0.60 -31.66 16.20 -3.05 -0.05 -31.71 16 13 N -0.65 -25.25 3.64 -858.80 -3.13 -28.38 16 14 C 0.11 3.53 7.67 83.09 0.64 4.17 16 15 C -0.09 -2.25 3.35 -10.54 -0.04 -2.28 16 16 C -0.10 -1.85 2.99 -9.78 -0.03 -1.87 16 17 H 0.10 1.68 7.91 -2.38 -0.02 1.66 16 18 C -0.15 -2.21 6.44 31.61 0.20 -2.01 16 19 C 0.04 0.63 7.63 72.49 0.55 1.19 16 20 O -0.40 -8.89 11.65 -148.98 -1.74 -10.63 16 21 C 0.05 0.93 7.18 72.49 0.52 1.45 16 22 C 0.11 2.99 7.42 83.18 0.62 3.60 16 23 C -0.04 -2.10 4.30 -19.87 -0.09 -2.19 16 24 C -0.14 -6.52 9.67 22.27 0.22 -6.31 16 25 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 26 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 27 C -0.13 -5.18 10.05 22.27 0.22 -4.96 16 28 C -0.11 -5.18 8.32 22.27 0.19 -4.99 16 29 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 30 H 0.07 2.70 7.15 -2.39 -0.02 2.68 16 31 H 0.09 2.57 7.93 -2.39 -0.02 2.55 16 32 H 0.10 2.52 7.92 -2.38 -0.02 2.50 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.24 7.33 -2.39 -0.02 1.22 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.06 1.26 7.72 -2.39 -0.02 1.24 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.31 8.10 -2.38 -0.02 2.29 16 40 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.11 4.73 7.96 -2.91 -0.02 4.71 16 42 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 44 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 45 H 0.09 4.53 7.89 -2.91 -0.02 4.51 16 Total: -1.00 -66.80 369.48 3.04 -63.76 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.97 Total: 29.01 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.68 Total: -16.83 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.85 Total: -76.37 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.79 Total: -42.34 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -66.80 3.04 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362482317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.283 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds