Wall clock time and date at job start Fri Apr 10 2020 23:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46589 * 2 1 4 4 C 1.52998 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.55210 * 29.32655 * 4 3 2 6 6 C 1.53000 * 117.50056 * 243.62450 * 4 3 2 7 7 C 1.52998 * 60.00240 * 252.50588 * 6 4 3 8 8 H 1.09002 * 117.49999 * 252.51211 * 7 6 4 9 9 N 1.46504 * 117.49883 * 107.48201 * 7 6 4 10 10 C 1.34778 * 119.99669 * 136.37802 * 9 7 6 11 11 O 1.21723 * 119.99897 * 0.02562 * 10 9 7 12 12 C 1.46248 * 119.99782 * 180.02562 * 10 9 7 13 13 C 1.35028 * 119.99818 * 180.02562 * 12 10 9 14 14 C 1.46966 * 119.99872 * 179.97438 * 13 12 10 15 15 C 1.40020 * 120.09975 * 359.73343 * 14 13 12 16 16 C 1.37604 * 119.89281 * 179.73980 * 15 14 13 17 17 C 1.39175 * 120.10064 * 0.50849 * 16 15 14 18 18 O 1.35575 * 119.89285 * 179.74358 * 17 16 15 19 19 C 1.34784 * 116.99652 * 174.46757 * 18 17 16 20 20 H 1.08001 * 120.00016 * 5.05591 * 19 18 17 21 21 C 1.38714 * 119.99916 * 185.05780 * 19 18 17 22 22 N 1.31508 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99855 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47122 * 59.99906 * 23 21 19 25 25 H 1.48500 * 109.46907 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47007 * 299.99982 * 23 21 19 27 27 C 1.39174 * 120.20417 * 359.75961 * 17 16 15 28 28 C 1.37597 * 120.10239 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.46692 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47482 * 299.99579 * 1 2 3 31 31 H 1.08999 * 109.47680 * 60.00307 * 1 2 3 32 32 H 1.08999 * 109.47680 * 119.99693 * 2 1 3 33 33 H 1.09001 * 109.47482 * 240.00421 * 2 1 3 34 34 H 1.08999 * 109.47318 * 299.99925 * 3 2 1 35 35 H 1.09002 * 109.47321 * 60.00320 * 3 2 1 36 36 H 1.09008 * 117.49911 * 359.97438 * 6 4 3 37 37 H 1.09007 * 117.50069 * 145.01550 * 6 4 3 38 38 H 0.96993 * 120.00110 * 316.38852 * 9 7 6 39 39 H 1.08001 * 120.00574 * 0.02562 * 12 10 9 40 40 H 1.07994 * 120.00269 * 0.02562 * 13 12 10 41 41 H 1.08003 * 120.05254 * 359.96917 * 15 14 13 42 42 H 1.07994 * 119.94602 * 180.27161 * 16 15 14 43 43 H 0.97008 * 119.99788 * 180.02562 * 22 21 19 44 44 H 1.07997 * 119.94466 * 179.97438 * 27 17 16 45 45 H 1.07997 * 120.04821 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5698 1.4427 -0.0006 5 1 4.0399 0.5855 -0.4826 6 6 4.2768 2.0455 1.2150 7 6 4.2762 2.7948 -0.1190 8 1 5.2111 2.8269 -0.6786 9 7 3.4356 3.9902 -0.2230 10 6 3.9153 5.1017 -0.8154 11 8 5.0467 5.1122 -1.2643 12 6 3.0764 6.2952 -0.9188 13 6 3.5568 7.4086 -1.5127 14 6 2.7136 8.6078 -1.6172 15 6 1.4099 8.5962 -1.1065 16 6 0.6260 9.7231 -1.2018 17 6 1.1235 10.8697 -1.8140 18 8 0.3456 11.9760 -1.9102 19 6 0.9218 13.0875 -2.4094 20 1 1.9329 13.0486 -2.7869 21 6 0.2162 14.2814 -2.4381 22 7 -1.0152 14.3286 -1.9787 23 14 1.0150 15.8221 -3.1292 24 1 1.3888 15.5921 -4.5478 25 1 0.0583 16.9550 -3.0472 26 1 2.2326 16.1439 -2.3424 27 6 2.4167 10.8840 -2.3280 28 6 3.2098 9.7637 -2.2324 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.6518 2.4424 2.0151 37 1 5.2120 1.5848 1.5331 38 1 2.5340 3.9817 0.1345 39 1 2.0727 6.2861 -0.5202 40 1 4.5603 7.4177 -1.9118 41 1 1.0216 7.7054 -0.6352 42 1 -0.3781 9.7165 -0.8043 43 1 -1.5088 15.1635 -1.9991 44 1 2.7984 11.7759 -2.8027 45 1 4.2134 9.7759 -2.6312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075372592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:49 Heat of formation + Delta-G solvation = -18.216145 kcal Electronic energy + Delta-G solvation = -23955.438578 eV Core-core repulsion = 20325.040425 eV Total energy + Delta-G solvation = -3630.398153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.90697 -39.18355 -38.02257 -36.86349 -34.56943 -33.24378 -32.67926 -32.22550 -30.44042 -28.30952 -27.64547 -25.71881 -23.92224 -22.37594 -22.20003 -21.86821 -21.11705 -20.10292 -19.36695 -18.18713 -17.21635 -17.10352 -16.29239 -15.61436 -15.14766 -14.85835 -14.69925 -14.64281 -14.35904 -14.18692 -13.85311 -13.80611 -13.47299 -13.04908 -12.93160 -12.70257 -12.60058 -12.42696 -11.94150 -11.87599 -11.73948 -11.73331 -11.40355 -11.20036 -11.12555 -11.08836 -11.04563 -10.71537 -10.55555 -10.26178 -9.82076 -9.61468 -9.51091 -8.91832 -8.77560 -8.39334 -7.12700 -6.66000 -4.20921 1.04831 2.12572 2.52304 3.03497 3.04781 3.07543 3.09242 3.36309 3.74752 3.81623 4.22747 4.49718 4.54769 4.58638 4.73560 4.81438 4.91149 4.93370 4.99442 5.03456 5.14856 5.25676 5.37477 5.44571 5.47397 5.51518 5.55084 5.55821 5.65550 5.66255 5.76002 5.84736 5.88142 5.98175 6.00172 6.10635 6.35552 6.46061 6.50379 6.60180 6.78001 6.90649 7.11831 7.22565 7.26944 7.51977 7.62839 7.79158 8.31700 8.78604 9.45348 10.50460 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.001884 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.382856 B =14858.084348 C =15785.001216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.162 4.162 5 H 0.110 0.890 6 C -0.192 4.192 7 C 0.088 3.912 8 H 0.136 0.864 9 N -0.704 5.704 10 C 0.560 3.440 11 O -0.558 6.558 12 C -0.285 4.285 13 C 0.041 3.959 14 C -0.200 4.200 15 C -0.042 4.042 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.394 4.394 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.401 0.599 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -22.007 4.338 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.131 4.131 4 C -0.181 4.181 5 H 0.128 0.872 6 C -0.231 4.231 7 C -0.018 4.018 8 H 0.153 0.847 9 N -0.353 5.353 10 C 0.353 3.647 11 O -0.438 6.438 12 C -0.306 4.306 13 C 0.021 3.979 14 C -0.201 4.201 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.063 6.063 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.262 4.262 28 C -0.053 4.053 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.235 0.765 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.484 -21.712 4.095 22.765 hybrid contribution -0.090 0.690 -0.071 0.699 sum 5.394 -21.022 4.023 22.073 Atomic orbital electron populations 1.21794 0.95800 1.01651 1.01986 1.21483 0.95783 0.96427 1.02034 1.21181 0.92265 0.97447 1.02170 1.22891 0.95440 0.97230 1.02565 0.87169 1.23584 1.02981 1.04207 0.92301 1.21620 0.97031 0.83005 1.00179 0.84670 1.45229 1.17384 1.11774 1.60934 1.18413 0.86708 0.83100 0.76523 1.90767 1.19934 1.84075 1.49016 1.22392 1.01361 0.93990 1.12822 1.22293 0.97345 0.90378 0.87858 1.18458 0.95574 0.94513 1.11535 1.20879 0.92610 0.96501 0.96078 1.20151 1.01459 0.92404 1.07889 1.19615 0.89618 0.88227 0.91503 1.83905 1.36415 1.16309 1.69627 1.21432 1.00253 0.84776 1.40440 0.88572 1.25396 0.95723 0.98675 0.96659 1.70006 1.09320 1.28034 1.41079 0.85714 0.78788 0.79163 0.79468 1.19248 1.20074 1.19232 1.21099 0.95520 1.00125 1.09414 1.20992 0.98069 0.91668 0.94539 0.92787 0.92699 0.92609 0.91967 0.91988 0.91258 0.91799 0.88527 0.88217 0.76456 0.85882 0.85893 0.86428 0.86128 0.91532 0.85108 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.71 5.89 -26.73 -0.16 -0.86 16 3 C -0.09 -0.61 4.41 -26.73 -0.12 -0.73 16 4 C -0.16 -1.17 5.74 -90.62 -0.52 -1.69 16 5 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 6 C -0.19 -1.43 10.10 -26.73 -0.27 -1.70 16 7 C 0.09 0.85 6.41 -67.93 -0.44 0.41 16 8 H 0.14 1.50 7.40 -51.93 -0.38 1.12 16 9 N -0.70 -7.44 5.34 -55.24 -0.29 -7.74 16 10 C 0.56 7.89 7.74 -13.04 -0.10 7.78 16 11 O -0.56 -9.76 15.80 5.17 0.08 -9.68 16 12 C -0.28 -3.87 9.41 -37.51 -0.35 -4.23 16 13 C 0.04 0.62 9.45 -37.19 -0.35 0.27 16 14 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 15 C -0.04 -0.72 9.40 -39.15 -0.37 -1.09 16 16 C -0.20 -3.97 9.97 -39.46 -0.39 -4.37 16 17 C 0.17 3.82 6.66 -38.89 -0.26 3.56 16 18 O -0.16 -4.37 9.74 0.71 0.01 -4.37 16 19 C -0.39 -10.42 9.48 30.91 0.29 -10.13 16 20 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 23 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 27 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 28 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 29 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.40 7.79 -51.93 -0.40 -0.01 16 36 H 0.10 0.70 8.03 -51.92 -0.42 0.28 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.32 7.81 -40.82 -0.32 3.00 16 39 H 0.12 1.43 6.06 -52.49 -0.32 1.11 16 40 H 0.12 1.86 7.52 -52.49 -0.39 1.46 16 41 H 0.12 1.61 6.16 -52.48 -0.32 1.29 16 42 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -30.31 381.35 -9.33 -39.64 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.49 Total: 7.60 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -4.12 Total: -22.63 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.46 Total: -30.74 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.31 -9.33 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075372592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.426 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds