Wall clock time and date at job start Fri Apr 10 2020 23:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46588 * 2 1 4 4 C 1.53009 * 109.46586 * 179.97438 * 3 2 1 5 5 H 1.08988 * 115.55116 * 330.67155 * 4 3 2 6 6 C 1.53001 * 117.51358 * 116.37237 * 4 3 2 7 7 C 1.53002 * 117.49559 * 184.99930 * 4 3 2 8 8 H 1.09000 * 117.50039 * 144.97317 * 7 4 3 9 9 N 1.46499 * 117.49945 * 359.97438 * 7 4 3 10 10 C 1.34771 * 120.00262 * 154.99893 * 9 7 4 11 11 O 1.21727 * 119.99783 * 0.02562 * 10 9 7 12 12 C 1.46252 * 120.00455 * 179.97438 * 10 9 7 13 13 C 1.35027 * 120.00225 * 180.02562 * 12 10 9 14 14 C 1.46965 * 119.99923 * 180.02562 * 13 12 10 15 15 C 1.40021 * 120.09778 * 179.97438 * 14 13 12 16 16 C 1.37601 * 119.89750 * 179.72703 * 15 14 13 17 17 C 1.39173 * 120.09650 * 0.27413 * 16 15 14 18 18 O 1.35571 * 119.89575 * 179.97438 * 17 16 15 19 19 C 1.34781 * 117.00247 * 354.44582 * 18 17 16 20 20 H 1.08001 * 119.99715 * 5.05139 * 19 18 17 21 21 C 1.38716 * 120.00271 * 185.05782 * 19 18 17 22 22 N 1.31516 * 119.99773 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00278 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46669 * 89.99984 * 23 21 19 25 25 H 1.48493 * 109.47473 * 210.00329 * 23 21 19 26 26 H 1.48503 * 109.46935 * 330.00544 * 23 21 19 27 27 C 1.39173 * 120.20949 * 359.97438 * 17 16 15 28 28 C 1.37595 * 120.09872 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47493 * 299.99984 * 1 2 3 31 31 H 1.09000 * 109.47476 * 60.00332 * 1 2 3 32 32 H 1.08997 * 109.47566 * 240.00418 * 2 1 3 33 33 H 1.08994 * 109.47074 * 119.99770 * 2 1 3 34 34 H 1.08997 * 109.47698 * 60.00238 * 3 2 1 35 35 H 1.09001 * 109.47326 * 299.99325 * 3 2 1 36 36 H 1.09003 * 117.50087 * 359.97438 * 6 4 3 37 37 H 1.09001 * 117.49822 * 214.96569 * 6 4 3 38 38 H 0.97004 * 120.00192 * 334.99646 * 9 7 4 39 39 H 1.07995 * 119.99881 * 0.02562 * 12 10 9 40 40 H 1.07995 * 119.99889 * 359.97438 * 13 12 10 41 41 H 1.07999 * 120.05422 * 359.97438 * 15 14 13 42 42 H 1.07995 * 119.94907 * 180.25557 * 16 15 14 43 43 H 0.97002 * 119.99550 * 179.97438 * 22 21 19 44 44 H 1.07993 * 119.95614 * 179.97438 * 27 17 16 45 45 H 1.08005 * 120.05236 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0398 0.5854 0.4826 6 6 4.2773 2.0452 -1.2149 7 6 4.2763 2.7946 0.1190 8 1 5.2107 2.8270 0.6793 9 7 3.4359 3.9901 0.2225 10 6 3.9152 5.1017 0.8148 11 8 5.0468 5.1125 1.2635 12 6 3.0765 6.2954 0.9176 13 6 3.5570 7.4092 1.5107 14 6 2.7139 8.6085 1.6145 15 6 3.2099 9.7644 2.2295 16 6 2.4189 10.8868 2.3194 17 6 1.1257 10.8722 1.8052 18 8 0.3497 11.9801 1.8965 19 6 0.8468 13.0195 2.5959 20 1 1.8540 12.9772 2.9834 21 6 0.0648 14.1435 2.8181 22 7 0.5498 15.1574 3.5010 23 14 -1.6771 14.2169 2.1474 24 1 -2.6190 13.6677 3.1554 25 1 -2.0349 15.6276 1.8524 26 1 -1.7619 13.4137 0.9013 27 6 0.6266 9.7239 1.1977 28 6 1.4103 8.5969 1.1033 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.6526 2.4414 -2.0155 37 1 5.2126 1.5844 -1.5325 38 1 2.5343 3.9817 -0.1354 39 1 2.0727 6.2859 0.5192 40 1 4.5606 7.4185 1.9095 41 1 4.2131 9.7765 2.6291 42 1 2.8021 11.7801 2.7899 43 1 0.0031 15.9435 3.6561 44 1 -0.3776 9.7170 0.8005 45 1 1.0221 7.7060 0.6320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075372595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:58 Heat of formation + Delta-G solvation = -16.004531 kcal Electronic energy + Delta-G solvation = -23993.116900 eV Core-core repulsion = 20362.814650 eV Total energy + Delta-G solvation = -3630.302250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.95714 -39.34619 -38.07331 -37.02391 -34.60267 -33.29063 -32.72160 -32.39887 -30.54234 -28.50569 -27.69153 -25.70986 -23.87995 -22.39504 -22.28670 -21.91673 -21.14399 -20.13839 -19.37174 -18.10887 -17.46326 -17.21962 -16.34565 -15.65642 -15.21514 -15.04566 -14.72227 -14.66163 -14.29623 -14.07245 -13.97412 -13.88997 -13.66901 -12.97586 -12.86483 -12.73208 -12.63596 -12.46021 -12.41432 -11.95579 -11.82308 -11.81118 -11.43292 -11.24163 -11.19722 -11.09733 -11.02320 -10.77701 -10.29709 -10.28383 -9.87408 -9.67275 -9.56000 -8.96909 -8.82999 -8.48216 -7.25653 -6.61291 -4.25051 0.96162 2.02327 2.43565 3.04464 3.10876 3.14869 3.27815 3.31342 3.70117 4.07944 4.19715 4.41597 4.51410 4.55549 4.61912 4.70664 4.78549 4.87189 4.93030 4.96046 5.11869 5.15189 5.34446 5.41178 5.41807 5.44430 5.47885 5.52746 5.58123 5.62860 5.71896 5.81895 5.85275 5.92894 5.95285 6.00711 6.27692 6.31446 6.45563 6.51882 6.66131 6.91519 7.07676 7.14816 7.40614 7.46758 7.61782 7.83133 8.26551 8.71939 9.32069 10.44901 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.001974 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.238257 B =14181.325768 C =15284.427333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.162 4.162 5 H 0.111 0.889 6 C -0.192 4.192 7 C 0.088 3.912 8 H 0.136 0.864 9 N -0.704 5.704 10 C 0.559 3.441 11 O -0.556 6.556 12 C -0.279 4.279 13 C 0.038 3.962 14 C -0.190 4.190 15 C -0.036 4.036 16 C -0.230 4.230 17 C 0.174 3.826 18 O -0.202 6.202 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.866 5.866 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.200 4.200 28 C -0.045 4.045 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.283 0.717 44 H 0.121 0.879 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -25.141 -7.780 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.131 4.131 4 C -0.181 4.181 5 H 0.129 0.871 6 C -0.230 4.230 7 C -0.019 4.019 8 H 0.154 0.846 9 N -0.353 5.353 10 C 0.352 3.648 11 O -0.436 6.436 12 C -0.300 4.300 13 C 0.018 3.982 14 C -0.191 4.191 15 C -0.055 4.055 16 C -0.249 4.249 17 C 0.119 3.881 18 O -0.105 6.105 19 C -0.467 4.467 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.502 5.502 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.063 4.063 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.235 0.765 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.069 -24.776 -7.438 25.951 hybrid contribution -1.079 0.188 -0.389 1.163 sum 0.990 -24.587 -7.828 25.822 Atomic orbital electron populations 1.21791 0.95806 1.01666 1.01966 1.21484 0.95780 0.96422 1.02060 1.21182 0.92267 0.97459 1.02144 1.22894 0.95435 0.97223 1.02564 0.87144 1.23583 1.02994 1.04184 0.92282 1.21626 0.97041 0.82977 1.00215 0.84638 1.45226 1.17409 1.11780 1.60873 1.18404 0.86729 0.83108 0.76591 1.90777 1.19876 1.84045 1.48890 1.22422 1.01289 0.93953 1.12381 1.22312 0.97504 0.90324 0.88028 1.18523 0.95509 0.94522 1.10571 1.21049 0.98315 0.91596 0.94504 1.21223 0.94957 1.00282 1.08431 1.19364 0.89922 0.86416 0.92399 1.83503 1.42883 1.20615 1.63480 1.20879 1.01766 0.92491 1.31522 0.87182 1.24545 0.99986 0.93960 0.95467 1.69622 1.38160 1.05793 1.36628 0.86153 0.82338 0.77743 0.80571 1.19631 1.20513 1.18210 1.20141 1.01184 0.91908 1.08647 1.20881 0.92584 0.96642 0.96203 0.92774 0.92609 0.92719 0.91954 0.91967 0.91265 0.91814 0.88529 0.88192 0.76461 0.85848 0.85713 0.86492 0.84482 0.90649 0.86116 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.67 5.89 -26.73 -0.16 -0.83 16 3 C -0.09 -0.58 4.41 -26.72 -0.12 -0.69 16 4 C -0.16 -1.11 5.74 -90.61 -0.52 -1.63 16 5 H 0.11 0.69 8.07 -51.94 -0.42 0.27 16 6 C -0.19 -1.37 10.10 -26.73 -0.27 -1.64 16 7 C 0.09 0.81 6.41 -67.93 -0.44 0.38 16 8 H 0.14 1.46 7.40 -51.93 -0.38 1.08 16 9 N -0.70 -7.11 5.34 -55.25 -0.29 -7.40 16 10 C 0.56 7.59 7.74 -13.04 -0.10 7.49 16 11 O -0.56 -9.50 15.80 5.16 0.08 -9.42 16 12 C -0.28 -3.61 9.41 -37.51 -0.35 -3.97 16 13 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 14 C -0.19 -3.09 5.87 -105.02 -0.62 -3.70 16 15 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 16 C -0.23 -4.67 9.14 -39.47 -0.36 -5.03 16 17 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 18 O -0.20 -5.02 8.57 0.74 0.01 -5.02 16 19 C -0.39 -10.46 9.94 30.91 0.31 -10.15 16 20 H 0.11 2.99 5.41 -52.49 -0.28 2.71 16 21 C 0.07 1.75 5.49 -17.51 -0.10 1.66 16 22 N -0.87 -23.84 13.96 55.48 0.77 -23.07 16 23 Si 0.91 20.52 28.62 -169.99 -4.86 15.66 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.20 -3.67 9.97 -39.47 -0.39 -4.06 16 28 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 36 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 3.11 7.81 -40.82 -0.32 2.79 16 39 H 0.12 1.33 6.07 -52.49 -0.32 1.01 16 40 H 0.13 1.82 7.52 -52.49 -0.39 1.43 16 41 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 43 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 45 H 0.12 1.50 6.16 -52.48 -0.32 1.18 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -29.43 380.22 -9.17 -38.60 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.50 Total: 5.95 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -4.11 Total: -21.03 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.48 Total: -30.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.86 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.43 -9.17 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075372595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.595 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds