Wall clock time and date at job start Fri Apr 10 2020 23:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99935 * 3 2 1 5 5 H 1.48506 * 109.47062 * 30.00126 * 3 2 1 6 6 H 1.48495 * 109.46994 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47398 * 305.00045 * 10 9 7 12 12 N 1.46896 * 109.47053 * 65.00291 * 10 9 7 13 13 C 1.46901 * 110.99913 * 205.00062 * 12 10 9 14 14 C 1.53002 * 109.47317 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46495 * 304.99591 * 14 13 12 16 16 O 1.42895 * 109.47367 * 64.99253 * 14 13 12 17 17 C 1.52993 * 109.47470 * 184.99912 * 14 13 12 18 18 N 1.46503 * 109.47487 * 174.99675 * 17 14 13 19 19 C 1.34950 * 126.03776 * 124.99489 * 18 17 14 20 20 C 1.35305 * 107.74587 * 179.97438 * 19 18 17 21 21 C 1.39871 * 107.92128 * 0.02562 * 20 19 18 22 22 N 1.30842 * 108.20392 * 359.73746 * 21 20 19 23 23 C 1.50703 * 109.46912 * 184.99967 * 10 9 7 24 24 C 1.38233 * 119.99662 * 279.72689 * 23 10 9 25 25 C 1.38238 * 119.99748 * 179.80858 * 24 23 10 26 26 C 1.38238 * 119.99869 * 0.39869 * 25 24 23 27 27 C 1.38232 * 120.00036 * 359.86136 * 26 25 24 28 28 C 1.38232 * 120.00031 * 359.94639 * 27 26 25 29 29 H 0.97001 * 119.99531 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 31 31 H 1.08991 * 109.46995 * 299.99937 * 9 7 2 32 32 H 1.00896 * 111.00728 * 81.04206 * 12 10 9 33 33 H 1.09007 * 109.47248 * 299.99411 * 13 12 10 34 34 H 1.08990 * 109.47767 * 59.99672 * 13 12 10 35 35 H 0.96708 * 113.99805 * 60.00228 * 16 14 13 36 36 H 1.09006 * 109.46713 * 294.99669 * 17 14 13 37 37 H 1.09001 * 109.47135 * 54.99273 * 17 14 13 38 38 H 1.08003 * 126.12207 * 0.02562 * 19 18 17 39 39 H 1.08000 * 126.04422 * 180.02562 * 20 19 18 40 40 H 1.08001 * 125.90165 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.00479 * 0.02562 * 24 23 10 42 42 H 1.07997 * 120.00351 * 180.22988 * 25 24 23 43 43 H 1.08003 * 120.00083 * 179.82956 * 26 25 24 44 44 H 1.08001 * 119.99800 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.00320 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 1 3.5865 -3.1759 0.8414 12 7 3.6333 -3.2931 -1.2556 13 6 3.5543 -4.7500 -1.0854 14 6 3.1491 -5.3973 -2.4112 15 1 2.2200 -4.9500 -2.7647 16 8 4.1785 -5.1849 -3.3792 17 6 2.9454 -6.8994 -2.2043 18 7 2.4426 -7.4993 -3.4427 19 6 2.9972 -8.5362 -4.1048 20 6 2.2340 -8.7856 -5.1940 21 6 1.1772 -7.8693 -5.1979 22 7 1.2982 -7.1012 -4.1457 23 6 5.5233 -2.6386 0.1243 24 6 6.3093 -2.4027 -0.9881 25 6 7.6869 -2.4005 -0.8732 26 6 8.2786 -2.6423 0.3525 27 6 7.4927 -2.8835 1.4638 28 6 6.1151 -2.8818 1.3497 29 1 -0.4849 0.8401 0.0004 30 1 3.8746 -0.6809 0.8905 31 1 3.8752 -0.6798 -0.8894 32 1 4.2674 -3.0501 -2.0018 33 1 4.5271 -5.1332 -0.7770 34 1 2.8123 -4.9872 -0.3231 35 1 5.0355 -5.5574 -3.1302 36 1 3.8958 -7.3613 -1.9366 37 1 2.2243 -7.0614 -1.4032 38 1 3.8897 -9.0716 -3.8165 39 1 2.4098 -9.5559 -5.9302 40 1 0.3941 -7.8090 -5.9392 41 1 5.8470 -2.2167 -1.9463 42 1 8.3009 -2.2126 -1.7416 43 1 9.3549 -2.6433 0.4417 44 1 7.9551 -3.0728 2.4213 45 1 5.5010 -3.0698 2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578564297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:47 Heat of formation + Delta-G solvation = 33.082138 kcal Electronic energy + Delta-G solvation = -25795.865975 eV Core-core repulsion = 22199.985034 eV Total energy + Delta-G solvation = -3595.880941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98843 -40.59915 -39.02166 -37.06304 -34.74664 -34.19079 -32.77768 -31.76574 -31.02457 -30.92803 -29.69949 -26.83478 -25.32285 -23.68027 -23.16194 -22.80378 -21.85676 -21.62309 -21.05457 -19.02425 -18.46602 -17.85981 -17.21442 -17.04229 -16.61683 -16.29242 -16.11235 -15.90529 -15.25256 -15.11431 -14.88004 -14.87742 -14.62113 -14.20490 -14.17404 -14.00702 -13.87340 -13.61857 -13.34448 -13.23696 -12.91790 -12.89265 -12.39030 -12.22485 -12.18842 -11.91449 -11.72777 -11.64013 -11.45626 -11.36092 -11.13249 -10.70571 -10.30128 -9.79712 -9.56541 -9.42899 -9.13689 -8.20085 -6.19077 0.48289 0.52617 1.06626 1.34727 1.35168 1.46437 1.65049 2.01870 2.39228 2.90390 3.06440 3.18510 3.35289 3.70439 3.85898 3.92931 3.99081 4.02844 4.13139 4.15595 4.20132 4.31410 4.32384 4.42447 4.44713 4.66424 4.70325 4.71111 4.76679 4.86975 4.93751 5.09093 5.12029 5.17120 5.19785 5.21114 5.38824 5.59874 5.63993 5.69247 5.73523 5.79195 6.15680 6.20544 6.28320 6.44561 6.62789 6.76187 6.85888 6.88305 7.41559 8.97276 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.004019 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.166052 B = 6965.021398 C = 9268.854342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.037 0.963 9 C 0.010 3.990 10 C 0.151 3.849 11 H 0.068 0.932 12 N -0.679 5.679 13 C 0.043 3.957 14 C 0.113 3.887 15 H 0.074 0.926 16 O -0.564 6.564 17 C 0.105 3.895 18 N -0.371 5.371 19 C 0.057 3.943 20 C -0.289 4.289 21 C 0.028 3.972 22 N -0.348 5.348 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.130 4.130 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.009 0.991 32 H 0.342 0.658 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.384 0.616 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.212 0.788 39 H 0.169 0.831 40 H 0.196 0.804 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.674 -17.780 -3.559 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.196 4.196 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.528 4.528 8 H 0.055 0.945 9 C -0.028 4.028 10 C 0.041 3.959 11 H 0.086 0.914 12 N -0.311 5.311 13 C -0.087 4.087 14 C 0.053 3.947 15 H 0.092 0.908 16 O -0.371 6.371 17 C -0.017 4.017 18 N -0.153 5.153 19 C -0.089 4.089 20 C -0.318 4.318 21 C -0.158 4.158 22 N -0.170 5.170 23 C -0.116 4.116 24 C -0.149 4.149 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.163 0.837 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.159 0.841 37 H 0.113 0.887 38 H 0.229 0.771 39 H 0.187 0.813 40 H 0.213 0.787 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.918 -16.244 -2.990 23.644 hybrid contribution 0.879 -0.019 -0.161 0.894 sum 17.797 -16.263 -3.151 24.313 Atomic orbital electron populations 1.70079 1.08098 1.27477 1.54229 1.25898 0.95474 1.02913 0.95284 0.85789 0.79473 0.79391 0.78704 1.19951 1.21177 1.17405 1.21244 0.91328 0.92794 1.47389 0.94487 1.19461 0.94462 0.93271 0.95612 1.20295 0.88077 0.95700 0.91840 0.91427 1.60348 1.56885 1.07259 1.06614 1.22478 1.00712 0.88639 0.96895 1.21968 0.91466 0.92808 0.88496 0.90779 1.86692 1.22241 1.81711 1.46414 1.22549 1.02334 0.93801 0.83008 1.48698 1.19670 1.25874 1.21073 1.23235 1.00614 0.91212 0.93844 1.21853 0.99395 1.07161 1.03408 1.24360 1.00570 0.94341 0.96498 1.77390 1.04876 1.25078 1.09686 1.20853 0.96540 0.99441 0.94756 1.21045 0.94655 1.01095 0.98094 1.21377 0.93943 0.99364 0.98914 1.21470 1.01035 0.99681 0.92399 1.21428 0.92980 0.99387 0.99908 1.21246 0.95936 1.00887 0.96752 0.92999 0.96572 0.97272 0.83680 0.92773 0.91046 0.76689 0.84051 0.88742 0.77148 0.81335 0.78728 0.86737 0.84063 0.83436 0.83833 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.52 13.96 21.45 0.30 -62.22 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.94 46.60 27.47 68.60 1.88 48.49 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 7 C -0.49 -28.85 9.39 25.60 0.24 -28.61 16 8 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 9 C 0.01 0.47 3.70 29.85 0.11 0.58 16 10 C 0.15 5.76 2.17 44.17 0.10 5.85 16 11 H 0.07 2.68 7.66 -2.39 -0.02 2.66 16 12 N -0.68 -24.76 5.95 -495.45 -2.95 -27.70 16 13 C 0.04 1.19 5.15 86.30 0.44 1.63 16 14 C 0.11 3.01 3.33 30.59 0.10 3.11 16 15 H 0.07 2.77 8.06 -2.38 -0.02 2.76 16 16 O -0.56 -14.27 12.80 -148.98 -1.91 -16.18 16 17 C 0.10 2.04 6.15 86.38 0.53 2.57 16 18 N -0.37 -8.89 3.62 -348.06 -1.26 -10.15 16 19 C 0.06 1.01 11.45 83.54 0.96 1.96 16 20 C -0.29 -5.55 10.80 21.99 0.24 -5.31 16 21 C 0.03 0.68 12.03 85.24 1.02 1.70 16 22 N -0.35 -10.85 12.35 -57.02 -0.70 -11.56 16 23 C -0.11 -3.51 4.71 -19.87 -0.09 -3.61 16 24 C -0.13 -3.59 9.12 22.27 0.20 -3.39 16 25 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 26 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 27 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 28 C -0.13 -3.49 9.67 22.27 0.22 -3.27 16 29 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 31 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 32 H 0.34 11.85 5.90 -89.70 -0.53 11.32 16 33 H 0.05 1.19 8.00 -2.38 -0.02 1.17 16 34 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 35 H 0.38 5.91 9.05 -74.05 -0.67 5.24 16 36 H 0.14 1.41 8.07 -2.38 -0.02 1.39 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.20 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.11 3.25 6.50 -2.91 -0.02 3.23 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.12 3.14 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -81.86 377.07 0.31 -81.55 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.26 Total: 31.01 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 5.20 Total: -33.25 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.61 Total: -111.62 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.91 Total: -16.18 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.49 kcal Total: -81.86 0.31 -81.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.636 kcal (2) G-P(sol) polarization free energy of solvation -81.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds