Wall clock time and date at job start Fri Apr 10 2020 23:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46825 * 239.99950 * 3 2 1 5 5 H 1.48495 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46922 * 120.00052 * 3 2 1 7 7 C 1.37876 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47565 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47027 * 305.00244 * 10 9 7 12 12 N 1.46903 * 109.47044 * 64.99527 * 10 9 7 13 13 C 1.46897 * 111.00344 * 205.00335 * 12 10 9 14 14 C 1.52992 * 109.47647 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47256 * 59.99776 * 14 13 12 16 16 O 1.42903 * 109.47063 * 299.99964 * 14 13 12 17 17 C 1.53002 * 109.47564 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.47148 * 184.99803 * 17 14 13 19 19 C 1.34946 * 126.03644 * 124.95038 * 18 17 14 20 20 C 1.35316 * 107.74870 * 180.02562 * 19 18 17 21 21 C 1.39875 * 107.91722 * 0.02562 * 20 19 18 22 22 N 1.30829 * 108.20298 * 0.02562 * 21 20 19 23 23 C 1.50701 * 109.47607 * 184.99648 * 10 9 7 24 24 C 1.38236 * 120.00108 * 279.72791 * 23 10 9 25 25 C 1.38231 * 120.00017 * 179.80886 * 24 23 10 26 26 C 1.38241 * 119.99589 * 0.39523 * 25 24 23 27 27 C 1.38233 * 120.00213 * 359.85643 * 26 25 24 28 28 C 1.38229 * 120.00139 * 359.96107 * 27 26 25 29 29 H 0.96995 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47429 * 59.99643 * 9 7 2 31 31 H 1.09002 * 109.47039 * 299.99426 * 9 7 2 32 32 H 1.00903 * 110.99777 * 328.95989 * 12 10 9 33 33 H 1.09004 * 109.46975 * 59.99785 * 13 12 10 34 34 H 1.09005 * 109.47318 * 300.00313 * 13 12 10 35 35 H 0.96700 * 113.99890 * 299.99883 * 16 14 13 36 36 H 1.08996 * 109.46833 * 64.99795 * 17 14 13 37 37 H 1.08993 * 109.46978 * 305.00271 * 17 14 13 38 38 H 1.07999 * 126.12479 * 0.04451 * 19 18 17 39 39 H 1.07999 * 126.03957 * 180.26092 * 20 19 18 40 40 H 1.08004 * 125.89587 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.99888 * 359.97438 * 24 23 10 42 42 H 1.07995 * 119.99904 * 180.22999 * 25 24 23 43 43 H 1.08000 * 119.99658 * 179.83699 * 26 25 24 44 44 H 1.07996 * 119.99872 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00221 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0084 -3.6539 1.2557 13 6 4.3096 -4.3140 1.0852 14 6 5.0733 -4.2863 2.4105 15 1 4.4970 -4.8106 3.1730 16 8 5.2763 -2.9309 2.8151 17 6 6.4282 -4.9745 2.2330 18 7 7.1088 -5.0542 3.5279 19 6 7.5790 -6.1772 4.1098 20 6 8.1360 -5.8270 5.2923 21 6 8.0010 -4.4424 5.4382 22 7 7.3847 -3.9783 4.3816 23 6 1.4959 -4.9637 -0.1232 24 6 0.8991 -5.5262 0.9896 25 6 0.2084 -6.7181 0.8753 26 6 0.1215 -7.3517 -0.3503 27 6 0.7227 -6.7919 -1.4620 28 6 1.4102 -5.5980 -1.3485 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8904 32 1 3.1229 -2.7135 1.6032 33 1 4.8856 -3.7900 0.3224 34 1 4.1548 -5.3481 0.7770 35 1 5.7832 -2.4034 2.1826 36 1 7.0388 -4.4002 1.5363 37 1 6.2764 -5.9796 1.8398 38 1 7.5214 -7.1766 3.7043 39 1 8.6055 -6.4974 5.9969 40 1 8.3460 -3.8576 6.2781 41 1 0.9702 -5.0330 1.9478 42 1 -0.2610 -7.1556 1.7439 43 1 -0.4160 -8.2843 -0.4391 44 1 0.6551 -7.2871 -2.4194 45 1 1.8795 -5.1604 -2.2171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578564298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:49 Heat of formation + Delta-G solvation = 28.493989 kcal Electronic energy + Delta-G solvation = -25761.131612 eV Core-core repulsion = 22165.051713 eV Total energy + Delta-G solvation = -3596.079898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95167 -40.34815 -38.96352 -37.03645 -34.77282 -34.15041 -32.61911 -31.63751 -30.96843 -30.65589 -29.49431 -26.80351 -25.34311 -23.70903 -23.23490 -22.71183 -21.82592 -21.61385 -20.97193 -18.60695 -18.36760 -17.50563 -17.33474 -17.08198 -16.56224 -16.35815 -16.08183 -15.73602 -15.51080 -15.05875 -14.79729 -14.62203 -14.50854 -14.13538 -14.04385 -13.69702 -13.66439 -13.52522 -13.40351 -13.13003 -12.96645 -12.74677 -12.52652 -12.31657 -12.13243 -11.98895 -11.77335 -11.53978 -11.41710 -11.17674 -11.03443 -10.58944 -10.24785 -9.68874 -9.45687 -9.40325 -9.24182 -8.20443 -6.31839 0.59163 0.65190 1.08685 1.38998 1.41996 1.48647 1.67912 2.03799 2.39073 2.98427 3.08995 3.17563 3.51771 3.76103 3.90169 4.02981 4.10024 4.13753 4.16562 4.19251 4.29952 4.34747 4.41703 4.43057 4.59744 4.66718 4.78585 4.80127 4.83484 4.89976 4.95442 5.05916 5.20727 5.22190 5.30397 5.41039 5.48758 5.68090 5.73228 5.79760 5.81905 5.87830 6.15236 6.21089 6.26426 6.39185 6.59907 6.81537 6.83078 6.89065 7.37349 8.90773 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.004339 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.918597 B = 6451.960382 C = 9346.449890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.041 3.959 10 C 0.143 3.857 11 H 0.036 0.964 12 N -0.678 5.678 13 C 0.038 3.962 14 C 0.114 3.886 15 H 0.086 0.914 16 O -0.559 6.559 17 C 0.104 3.896 18 N -0.376 5.376 19 C 0.046 3.954 20 C -0.288 4.288 21 C 0.019 3.981 22 N -0.318 5.318 23 C -0.077 4.077 24 C -0.106 4.106 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.124 4.124 28 C -0.137 4.137 29 H 0.263 0.737 30 H -0.010 1.010 31 H -0.007 1.007 32 H 0.350 0.650 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.378 0.622 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.207 0.793 39 H 0.167 0.833 40 H 0.195 0.805 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -17.957 2.929 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.004 3.996 10 C 0.034 3.966 11 H 0.054 0.946 12 N -0.311 5.311 13 C -0.092 4.092 14 C 0.053 3.947 15 H 0.104 0.896 16 O -0.364 6.364 17 C -0.018 4.018 18 N -0.159 5.159 19 C -0.099 4.099 20 C -0.317 4.317 21 C -0.167 4.167 22 N -0.139 5.139 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.156 4.156 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.011 0.989 32 H 0.171 0.829 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.224 0.776 39 H 0.184 0.816 40 H 0.212 0.788 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.935 -17.541 2.971 21.423 hybrid contribution 1.001 1.470 -0.516 1.852 sum 12.935 -16.071 2.455 20.775 Atomic orbital electron populations 1.70096 1.07846 1.27733 1.51367 1.25868 0.95556 1.03043 0.94691 0.85584 0.78315 0.78565 0.79078 1.19161 1.21253 1.19329 1.21443 0.93170 0.91729 1.50718 0.92023 1.19006 0.93891 0.91902 0.94829 1.20291 0.94119 0.91845 0.90378 0.94591 1.60346 1.17072 1.25601 1.28117 1.22555 0.90098 1.00651 0.95892 1.22035 0.93084 0.83476 0.96069 0.89628 1.86703 1.77548 1.22037 1.50137 1.22568 0.92945 1.05465 0.80841 1.48788 1.45136 1.04957 1.16994 1.23243 0.97982 0.93623 0.95092 1.21851 1.13346 0.95692 1.00791 1.24412 0.98510 0.95972 0.97816 1.77532 1.20517 1.12036 1.03822 1.20094 0.98261 0.95364 0.94009 1.21024 0.97115 0.95915 0.98428 1.21416 0.99244 0.95401 0.98871 1.21412 1.00142 1.00900 0.92390 1.21348 0.97675 0.95391 0.99770 1.21212 1.01193 0.96463 0.96715 0.92859 0.99180 0.98863 0.82885 0.94478 0.89613 0.77425 0.88616 0.84496 0.77593 0.81582 0.78776 0.87256 0.84611 0.83525 0.83806 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -29.24 8.12 25.60 0.21 -29.03 16 8 H 0.06 3.19 7.49 -2.91 -0.02 3.17 16 9 C 0.04 2.15 4.55 29.85 0.14 2.29 16 10 C 0.14 5.82 2.19 44.17 0.10 5.92 16 11 H 0.04 1.46 7.66 -2.39 -0.02 1.44 16 12 N -0.68 -24.85 5.54 -495.46 -2.74 -27.59 16 13 C 0.04 1.03 5.18 86.30 0.45 1.48 16 14 C 0.11 2.85 3.45 30.59 0.11 2.96 16 15 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 16 O -0.56 -17.24 11.71 -148.98 -1.74 -18.98 16 17 C 0.10 1.87 6.18 86.38 0.53 2.40 16 18 N -0.38 -8.43 3.68 -348.07 -1.28 -9.71 16 19 C 0.05 0.80 11.45 83.54 0.96 1.76 16 20 C -0.29 -5.30 10.80 21.99 0.24 -5.06 16 21 C 0.02 0.43 12.03 85.24 1.03 1.46 16 22 N -0.32 -8.96 11.56 -57.02 -0.66 -9.62 16 23 C -0.08 -2.78 4.71 -19.86 -0.09 -2.87 16 24 C -0.11 -3.70 9.33 22.27 0.21 -3.49 16 25 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 26 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 27 C -0.12 -3.20 10.05 22.27 0.22 -2.97 16 28 C -0.14 -4.34 9.67 22.27 0.22 -4.13 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.35 14.75 6.60 -89.69 -0.59 14.16 16 33 H 0.04 0.95 8.06 -2.38 -0.02 0.94 16 34 H 0.09 2.09 8.00 -2.38 -0.02 2.07 16 35 H 0.38 9.77 9.05 -74.06 -0.67 9.10 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.14 1.50 8.07 -2.39 -0.02 1.48 16 38 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.11 4.12 7.71 -2.91 -0.02 4.10 16 42 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.12 3.55 8.04 -2.91 -0.02 3.53 16 Total: -1.00 -73.61 379.79 0.82 -72.79 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.27 Total: 38.27 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 5.21 Total: -34.88 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.40 Total: -103.43 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.74 Total: -18.98 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.61 0.82 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578564298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.282 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds