Wall clock time and date at job start Fri Apr 10 2020 23:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99476 * 3 2 1 5 5 H 1.48504 * 109.47401 * 29.99467 * 3 2 1 6 6 H 1.48500 * 109.47541 * 149.99962 * 3 2 1 7 7 C 1.40031 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.41338 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78420 * 180.02562 * 9 7 2 11 11 C 1.38307 * 119.12435 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66855 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.50213 * 359.97438 * 12 11 10 14 14 N 1.39267 * 119.57890 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00000 * 174.66399 * 14 13 12 16 16 O 1.21271 * 120.00459 * 5.14771 * 15 14 13 17 17 C 1.51496 * 119.99871 * 185.15058 * 15 14 13 18 18 C 1.52478 * 108.85057 * 299.16696 * 17 15 14 19 19 C 1.52128 * 112.63441 * 188.80193 * 18 17 15 20 20 C 1.52187 * 112.85369 * 44.68667 * 19 18 17 21 21 N 1.45811 * 112.61855 * 314.07974 * 20 19 18 22 22 C 1.45876 * 113.93454 * 288.68529 * 21 20 19 23 23 C 1.52308 * 112.13892 * 70.07834 * 22 21 20 24 24 C 1.52171 * 112.43481 * 47.57728 * 23 22 21 25 25 C 1.46486 * 112.11014 * 57.12140 * 21 20 19 26 26 N 1.31929 * 120.84808 * 359.97438 * 13 12 11 27 27 H 0.97000 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.43912 * 359.96722 * 10 9 7 29 29 H 1.07999 * 120.66448 * 179.97438 * 11 10 9 30 30 H 1.08004 * 120.24798 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00019 * 354.66349 * 14 13 12 32 32 H 1.09701 * 109.05737 * 310.30515 * 18 17 15 33 33 H 1.09713 * 109.03327 * 67.38846 * 18 17 15 34 34 H 1.08745 * 110.89584 * 279.63247 * 19 18 17 35 35 H 1.10622 * 107.93742 * 163.73531 * 19 18 17 36 36 H 1.09706 * 109.04675 * 192.75045 * 20 19 18 37 37 H 1.09678 * 109.17059 * 75.59403 * 20 19 18 38 38 H 1.09635 * 109.22324 * 191.11202 * 22 21 20 39 39 H 1.09572 * 109.36501 * 308.76048 * 22 21 20 40 40 H 1.10501 * 107.98553 * 166.78399 * 23 22 21 41 41 H 1.08685 * 110.72649 * 282.91835 * 23 22 21 42 42 H 1.09683 * 109.24740 * 192.95267 * 24 23 22 43 43 H 1.09701 * 109.19760 * 75.58143 * 24 23 22 44 44 H 1.08867 * 109.94881 * 175.82172 * 25 21 20 45 45 H 1.08894 * 109.90136 * 54.78819 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0016 10 6 2.0085 -3.6519 0.0027 11 6 1.3032 -4.8416 0.0043 12 6 -0.0829 -4.7934 0.0043 13 6 -0.7279 -3.5550 0.0031 14 7 -2.1196 -3.5047 0.0036 15 6 -2.7511 -2.3189 0.1111 16 8 -2.1109 -1.2889 0.1134 17 6 -4.2607 -2.2726 0.2291 18 6 -4.8720 -2.8971 -1.0204 19 6 -6.3794 -2.7056 -1.0931 20 6 -6.8128 -1.2892 -0.7436 21 7 -6.1551 -0.7811 0.4544 22 6 -6.6128 -1.4054 1.6908 23 6 -6.1582 -2.8545 1.8046 24 6 -4.6801 -3.0262 1.4865 25 6 -4.6953 -0.8079 0.3354 26 7 -0.0358 -2.4318 0.0026 27 1 -0.4850 0.8400 -0.0004 28 1 3.0885 -3.6561 0.0022 29 1 1.8214 -5.7891 0.0048 30 1 -0.6591 -5.7069 0.0051 31 1 -2.6345 -4.3232 -0.0734 32 1 -4.4069 -2.4508 -1.9080 33 1 -4.6431 -3.9700 -1.0327 34 1 -6.8933 -3.4328 -0.4690 35 1 -6.6992 -2.9108 -2.1321 36 1 -7.8992 -1.2745 -0.5916 37 1 -6.5892 -0.6255 -1.5877 38 1 -6.2246 -0.8398 2.5460 39 1 -7.7070 -1.3660 1.7342 40 1 -6.3264 -3.1841 2.8458 41 1 -6.7673 -3.4992 1.1763 42 1 -4.4598 -4.0927 1.3559 43 1 -4.0844 -2.6668 2.3347 44 1 -4.2425 -0.3543 1.2155 45 1 -4.3863 -0.2688 -0.5588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922158607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:14:00 Heat of formation + Delta-G solvation = 19.345590 kcal Electronic energy + Delta-G solvation = -27595.649344 eV Core-core repulsion = 23999.172742 eV Total energy + Delta-G solvation = -3596.476603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91497 -38.80117 -37.25121 -34.13939 -33.41840 -33.14972 -32.81462 -30.70913 -30.27184 -28.92674 -26.42817 -25.60475 -24.17407 -23.09113 -21.73832 -21.51302 -21.08941 -19.41077 -18.37947 -17.77025 -16.45239 -16.09411 -15.64920 -15.07585 -14.81509 -14.52170 -14.49575 -14.36620 -13.83966 -13.65522 -13.48798 -13.25910 -13.07610 -12.76108 -12.55344 -12.41364 -11.91072 -11.80582 -11.58144 -11.41708 -11.25006 -11.13512 -11.07632 -10.94286 -10.75979 -10.63991 -10.55079 -10.45897 -9.92010 -9.86040 -9.64112 -9.00020 -8.82245 -8.05124 -7.95312 -7.17880 -6.94525 -6.12486 -4.38819 2.79046 3.08442 3.18803 3.20931 3.27858 3.74312 3.79883 4.05347 4.07814 4.62505 4.70320 4.75083 4.90346 4.91714 4.98743 5.08638 5.16352 5.30940 5.37189 5.46093 5.56875 5.70220 5.74015 5.78271 5.82255 5.96502 5.99760 6.04109 6.05722 6.13063 6.13744 6.16744 6.34680 6.42290 6.49889 6.70970 6.84765 6.86190 7.16853 7.25750 7.31306 7.56506 7.64287 7.82218 8.08680 8.21510 8.48747 8.75861 9.06368 9.30009 10.26088 10.49600 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.004699 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.359634 B = 5956.908805 C = 7238.973734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.372 3.628 14 N -0.665 5.665 15 C 0.481 3.519 16 O -0.405 6.405 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.149 4.149 20 C 0.067 3.933 21 N -0.547 5.547 22 C 0.067 3.933 23 C -0.150 4.150 24 C -0.099 4.099 25 C 0.093 3.907 26 N -0.473 5.473 27 H 0.272 0.728 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 -3.938 0.646 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.273 5.273 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.133 3.867 14 N -0.311 5.311 15 C 0.262 3.738 16 O -0.268 6.268 17 C -0.109 4.109 18 C -0.138 4.138 19 C -0.188 4.188 20 C -0.061 4.061 21 N -0.267 5.267 22 C -0.062 4.062 23 C -0.189 4.189 24 C -0.137 4.137 25 C -0.035 4.035 26 N -0.192 5.192 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.292 -1.648 0.708 15.397 hybrid contribution 0.828 -1.765 -0.119 1.953 sum -14.464 -3.413 0.590 14.873 Atomic orbital electron populations 1.70313 1.05722 1.27420 1.23855 1.26167 0.95141 1.00538 0.95269 0.86530 0.80562 0.81937 0.79012 1.19678 1.20266 1.18801 1.19581 0.94046 0.89391 1.42561 0.90012 1.18398 0.87229 0.91935 0.87883 1.21624 0.98524 0.93557 1.19177 1.20552 0.93193 0.96495 0.95828 1.20490 0.94800 0.94962 1.28213 1.18649 0.83432 0.90892 0.93721 1.43457 1.04916 1.09256 1.73509 1.20768 0.88504 0.84890 0.79685 1.91141 1.64943 1.30844 1.39872 1.21325 0.93645 0.99867 0.96086 1.21258 0.95015 1.00589 0.96927 1.21975 0.95924 0.98819 1.02082 1.21736 0.98234 0.93526 0.92598 1.60270 1.07109 1.57273 1.02083 1.21771 0.99775 0.92327 0.92286 1.22005 0.96260 0.98669 1.01978 1.21245 0.95842 0.99918 0.96707 1.21772 0.85243 0.92400 1.04065 1.68711 1.06948 1.23189 1.20328 0.91574 0.88624 0.88719 0.89275 0.77088 0.91555 0.92051 0.91600 0.92238 0.91328 0.90982 0.90967 0.91251 0.92191 0.91567 0.91987 0.91594 0.89731 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.07 8.99 55.55 0.50 -17.57 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 3 Si 0.90 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.43 -11.77 9.14 -37.73 -0.34 -12.11 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.27 7.66 6.55 -84.99 -0.56 7.10 16 10 C -0.31 -7.78 9.83 -38.66 -0.38 -8.16 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.15 9.95 -38.89 -0.39 -8.54 16 13 C 0.37 9.11 7.43 -154.98 -1.15 7.96 16 14 N -0.66 -13.11 5.19 -11.15 -0.06 -13.17 16 15 C 0.48 9.52 6.31 -10.59 -0.07 9.46 16 16 O -0.41 -9.97 11.69 5.57 0.07 -9.90 16 17 C -0.10 -1.50 0.57 -155.73 -0.09 -1.59 16 18 C -0.10 -1.24 4.50 -27.44 -0.12 -1.36 16 19 C -0.15 -1.49 5.10 -27.59 -0.14 -1.63 16 20 C 0.07 0.70 5.76 -4.83 -0.03 0.68 16 21 N -0.55 -6.69 4.79 -236.54 -1.13 -7.83 16 22 C 0.07 0.70 5.77 -4.73 -0.03 0.68 16 23 C -0.15 -1.52 5.15 -27.51 -0.14 -1.66 16 24 C -0.10 -1.25 4.52 -27.43 -0.12 -1.37 16 25 C 0.09 1.39 4.18 -3.97 -0.02 1.38 16 26 N -0.47 -13.28 5.74 -10.26 -0.06 -13.34 16 27 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 28 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.40 6.26 7.84 -40.82 -0.32 5.94 16 32 H 0.07 0.93 8.14 -51.53 -0.42 0.51 16 33 H 0.06 0.70 7.70 -51.52 -0.40 0.30 16 34 H 0.07 0.61 5.73 -52.07 -0.30 0.31 16 35 H 0.06 0.53 8.27 -51.00 -0.42 0.11 16 36 H 0.07 0.61 8.10 -51.53 -0.42 0.19 16 37 H 0.07 0.77 8.20 -51.54 -0.42 0.35 16 38 H 0.07 0.79 8.19 -51.57 -0.42 0.37 16 39 H 0.07 0.62 8.10 -51.60 -0.42 0.20 16 40 H 0.06 0.55 8.27 -51.07 -0.42 0.13 16 41 H 0.07 0.62 5.66 -52.11 -0.29 0.32 16 42 H 0.06 0.73 7.93 -51.54 -0.41 0.32 16 43 H 0.07 0.95 8.14 -51.53 -0.42 0.53 16 44 H 0.08 1.41 8.07 -52.00 -0.42 0.99 16 45 H 0.08 1.39 8.08 -51.99 -0.42 0.97 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -31.52 344.45 -11.33 -42.85 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.74 Total: 8.42 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.07 Total: -8.99 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.75 Total: -51.91 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.52 -11.33 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922158607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.195 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds