Wall clock time and date at job start Fri Apr 10 2020 23:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38174 * 119.55461 * 2 1 4 4 C 1.39796 * 118.99706 * 180.22666 * 3 2 1 5 5 C 1.48150 * 120.91740 * 179.75397 * 4 3 2 6 6 O 1.21513 * 120.00067 * 46.27054 * 5 4 3 7 7 N 1.34775 * 119.99801 * 226.26526 * 5 4 3 8 8 C 1.47323 * 120.68790 * 357.09732 * 7 5 4 9 9 C 1.53588 * 108.63913 * 125.69855 * 8 7 5 10 10 H 1.08998 * 110.59713 * 172.18657 * 9 8 7 11 11 C 1.53374 * 108.68926 * 294.37929 * 9 8 7 12 12 C 1.53003 * 109.26991 * 60.30051 * 11 9 8 13 13 C 1.53012 * 109.80008 * 60.56236 * 12 11 9 14 14 C 1.53361 * 109.25902 * 299.42776 * 13 12 11 15 15 H 1.08996 * 111.08964 * 177.82898 * 14 13 12 16 16 C 1.46949 * 120.44582 * 176.91501 * 7 5 4 17 17 N 1.47568 * 107.98536 * 56.37315 * 14 13 12 18 18 C 1.36937 * 121.61074 * 122.27795 * 17 14 13 19 19 H 1.07998 * 120.00041 * 28.05443 * 18 17 14 20 20 C 1.38812 * 120.00071 * 208.04707 * 18 17 14 21 21 N 1.31623 * 120.00016 * 19.74128 * 20 18 17 22 22 Si 1.86802 * 120.00053 * 199.74276 * 20 18 17 23 23 H 1.48495 * 109.47314 * 94.61333 * 22 20 18 24 24 H 1.48503 * 109.47062 * 214.61445 * 22 20 18 25 25 H 1.48507 * 109.46928 * 334.61152 * 22 20 18 26 26 C 1.39826 * 118.15707 * 359.48098 * 4 3 2 27 27 C 1.38131 * 119.00658 * 0.27091 * 26 4 3 28 28 N 1.31802 * 119.54942 * 179.69670 * 2 1 3 29 29 H 1.08998 * 109.46613 * 270.30345 * 1 2 3 30 30 H 1.09002 * 109.46732 * 30.30086 * 1 2 3 31 31 H 1.08994 * 109.47084 * 150.30062 * 1 2 3 32 32 H 1.08000 * 120.49711 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.55055 * 5.95932 * 8 7 5 34 34 H 1.08996 * 109.58676 * 245.45654 * 8 7 5 35 35 H 1.08999 * 109.50529 * 180.24153 * 11 9 8 36 36 H 1.09000 * 109.50160 * 300.36396 * 11 9 8 37 37 H 1.09000 * 109.41697 * 180.66739 * 12 11 9 38 38 H 1.09000 * 109.41551 * 300.53056 * 12 11 9 39 39 H 1.09003 * 109.50357 * 179.48593 * 13 12 11 40 40 H 1.09010 * 109.50160 * 59.36131 * 13 12 11 41 41 H 1.08997 * 109.61886 * 114.49713 * 16 7 5 42 42 H 1.09005 * 109.61885 * 354.12537 * 16 7 5 43 43 H 0.96996 * 119.99482 * 179.97438 * 21 20 18 44 44 H 1.08004 * 120.50065 * 180.29205 * 26 4 3 45 45 H 1.07997 * 119.55239 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2020 0.0000 4 6 3.5865 1.1884 -0.0048 5 6 4.3600 2.4519 -0.0105 6 8 4.0595 3.3517 0.7489 7 7 5.3971 2.6033 -0.8578 8 6 5.8146 1.4997 -1.7399 9 6 5.8311 2.0088 -3.1889 10 1 6.2663 1.2619 -3.8528 11 6 4.3950 2.3484 -3.6068 12 6 3.8445 3.4372 -2.6835 13 6 4.7059 4.6968 -2.7964 14 6 6.1429 4.3663 -2.3750 15 1 6.7923 5.2353 -2.4807 16 6 6.1286 3.8763 -0.9195 17 7 6.6212 3.2547 -3.2196 18 6 7.7443 3.3735 -3.9941 19 1 8.5353 4.0467 -3.6985 20 6 7.8660 2.6285 -5.1590 21 7 6.7947 2.1193 -5.7296 22 14 9.5503 2.3486 -5.9169 23 1 10.0976 1.0525 -5.4420 24 1 9.4290 2.3222 -7.3967 25 1 10.4632 3.4487 -5.5146 26 6 4.2343 -0.0508 0.0017 27 6 3.4741 -1.2040 0.0069 28 7 2.1571 -1.1466 0.0061 29 1 -0.3632 0.0054 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8926 -0.5091 32 1 1.6495 2.1377 -0.0004 33 1 5.1089 0.6738 -1.6499 34 1 6.8127 1.1644 -1.4583 35 1 4.3907 2.7075 -4.6360 36 1 3.7729 1.4567 -3.5293 37 1 2.8196 3.6720 -2.9710 38 1 3.8592 3.0805 -1.6536 39 1 4.3042 5.4720 -2.1438 40 1 4.7010 5.0497 -3.8278 41 1 7.1513 3.7278 -0.5730 42 1 5.6321 4.6145 -0.2896 43 1 6.8799 1.5991 -6.5438 44 1 5.3130 -0.1054 0.0030 45 1 3.9653 -2.1658 0.0115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039948775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:37 Heat of formation + Delta-G solvation = 56.940954 kcal Electronic energy + Delta-G solvation = -28179.623089 eV Core-core repulsion = 24584.776744 eV Total energy + Delta-G solvation = -3594.846345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17890 -39.74640 -37.73713 -34.26953 -33.33505 -32.67140 -32.50273 -31.67167 -30.40849 -27.82369 -27.13281 -25.75601 -24.47950 -23.46417 -22.62204 -21.55022 -21.24557 -19.66280 -18.38361 -17.54128 -16.75951 -16.31282 -15.96336 -15.57536 -14.94340 -14.83756 -14.55301 -14.41133 -14.02322 -13.63213 -13.43719 -13.27465 -13.18628 -12.92662 -12.64046 -12.45781 -12.37310 -12.14355 -11.91185 -11.69537 -11.43559 -11.26470 -11.00069 -10.77812 -10.35080 -10.25596 -10.18851 -10.12203 -10.08761 -9.78081 -9.62266 -9.41281 -9.28473 -8.93745 -8.59006 -7.99222 -6.70563 -5.90893 -3.33238 0.86076 1.01982 2.82165 3.21912 3.30480 3.39409 3.39790 3.71940 4.19060 4.38051 4.46625 4.69087 4.90754 4.97672 5.10058 5.24229 5.33022 5.37135 5.46108 5.61375 5.64314 5.66288 5.69995 5.78063 5.79867 5.87360 5.91267 5.94925 6.00681 6.09627 6.17727 6.31251 6.36511 6.41410 6.54153 6.55513 6.64151 6.79746 6.93660 7.00553 7.02588 7.35572 7.47105 7.66804 7.74676 7.86953 8.28364 8.30424 9.05176 9.67486 10.29654 11.16223 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.004647 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.737112 B = 6024.296298 C = 6530.851981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 C -0.124 4.124 4 C -0.067 4.067 5 C 0.557 3.443 6 O -0.546 6.546 7 N -0.578 5.578 8 C 0.072 3.928 9 C 0.179 3.821 10 H 0.115 0.885 11 C -0.113 4.113 12 C -0.138 4.138 13 C -0.122 4.122 14 C 0.152 3.848 15 H 0.080 0.920 16 C 0.100 3.900 17 N -0.578 5.578 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.007 3.993 21 N -0.894 5.894 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C -0.150 4.150 27 C 0.101 3.899 28 N -0.477 5.477 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.254 0.746 44 H 0.144 0.856 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -4.206 9.502 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.144 4.144 4 C -0.078 4.078 5 C 0.346 3.654 6 O -0.425 6.425 7 N -0.309 5.309 8 C -0.051 4.051 9 C 0.072 3.928 10 H 0.132 0.868 11 C -0.152 4.152 12 C -0.176 4.176 13 C -0.161 4.161 14 C 0.044 3.956 15 H 0.098 0.902 16 C -0.023 4.023 17 N -0.299 5.299 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.192 4.192 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.170 4.170 27 C -0.056 4.056 28 N -0.187 5.187 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.162 0.838 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.101 -4.564 9.709 13.443 hybrid contribution 1.415 0.588 -0.686 1.679 sum -6.686 -3.976 9.023 11.913 Atomic orbital electron populations 1.20715 0.88485 1.03680 1.03112 1.21229 0.97155 0.87835 0.95149 1.21975 0.93017 0.99895 0.99553 1.20372 0.94465 0.94146 0.98791 1.17972 0.80518 0.86505 0.80451 1.90761 1.68905 1.42123 1.40709 1.48183 1.30233 1.15393 1.37095 1.23156 0.99505 0.88517 0.93957 1.21095 0.90773 0.90650 0.90325 0.86784 1.21806 0.96669 0.96175 1.00554 1.22092 0.96982 0.96826 1.01668 1.21919 0.96814 0.96578 1.00800 1.21242 0.93674 0.91973 0.88720 0.90167 1.22312 0.95489 0.84661 0.99852 1.44422 1.28448 1.07372 1.49629 1.19161 0.93376 1.24782 1.00941 0.91403 1.25009 0.96879 1.01849 0.95499 1.70013 1.26494 1.38077 1.19206 0.86301 0.84163 0.78245 0.78213 1.21468 1.21841 1.20409 1.22403 1.01991 0.92352 1.00300 1.22685 0.89143 0.98292 0.95442 1.67374 1.10281 1.29364 1.11670 0.90356 0.90530 0.90301 0.84228 0.90146 0.91363 0.90569 0.94845 0.94996 0.90830 0.93930 0.92216 0.91624 0.89906 0.93550 0.83841 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.16 36.01 0.37 -0.58 16 2 C 0.12 1.56 6.78 -82.62 -0.56 1.00 16 3 C -0.12 -1.71 9.46 -39.02 -0.37 -2.08 16 4 C -0.07 -1.00 5.03 -104.65 -0.53 -1.53 16 5 C 0.56 9.66 4.75 -12.19 -0.06 9.60 16 6 O -0.55 -10.80 16.42 5.35 0.09 -10.71 16 7 N -0.58 -10.03 1.66 -172.94 -0.29 -10.32 16 8 C 0.07 1.25 4.77 -3.29 -0.02 1.23 16 9 C 0.18 3.77 2.67 -66.85 -0.18 3.59 16 10 H 0.11 2.74 5.96 -51.93 -0.31 2.43 16 11 C -0.11 -2.32 5.56 -26.54 -0.15 -2.47 16 12 C -0.14 -2.62 5.55 -26.72 -0.15 -2.77 16 13 C -0.12 -2.35 5.58 -26.54 -0.15 -2.50 16 14 C 0.15 2.99 3.62 -66.85 -0.24 2.75 16 15 H 0.08 1.55 8.01 -51.93 -0.42 1.14 16 16 C 0.10 1.79 5.86 -3.49 -0.02 1.77 16 17 N -0.58 -13.03 2.53 -155.44 -0.39 -13.42 16 18 C -0.25 -6.37 9.70 -15.06 -0.15 -6.52 16 19 H 0.07 1.70 7.90 -52.49 -0.41 1.29 16 20 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 21 N -0.89 -23.77 11.09 55.49 0.62 -23.15 16 22 Si 0.90 20.41 29.60 -169.99 -5.03 15.38 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.15 -1.92 7.45 -39.03 -0.29 -2.22 16 27 C 0.10 1.20 11.17 -17.59 -0.20 1.00 16 28 N -0.48 -6.28 10.25 -9.52 -0.10 -6.38 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.60 8.08 -51.93 -0.42 0.19 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.08 1.25 4.35 -51.93 -0.23 1.02 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.81 7.95 -51.93 -0.41 1.40 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.36 2.43 -52.45 -0.13 1.23 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 43 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.14 1.64 6.80 -52.48 -0.36 1.28 16 45 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -29.12 343.95 -9.10 -38.22 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.41 Total: 4.82 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.77 Total: 0.39 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.16 Total: -53.28 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.12 -9.10 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039948775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.157 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds