Wall clock time and date at job start Fri Apr 10 2020 23:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38174 * 119.55461 * 2 1 4 4 C 1.39796 * 118.99706 * 180.22666 * 3 2 1 5 5 C 1.48150 * 120.91740 * 179.75397 * 4 3 2 6 6 O 1.21513 * 120.00067 * 46.27054 * 5 4 3 7 7 N 1.34775 * 119.99801 * 226.26526 * 5 4 3 8 8 C 1.47323 * 120.68790 * 357.09732 * 7 5 4 9 9 C 1.53588 * 108.63913 * 125.69855 * 8 7 5 10 10 H 1.08998 * 110.59713 * 172.18657 * 9 8 7 11 11 C 1.53374 * 108.68926 * 294.37929 * 9 8 7 12 12 C 1.53003 * 109.26991 * 60.30051 * 11 9 8 13 13 C 1.53012 * 109.80008 * 60.56236 * 12 11 9 14 14 C 1.53361 * 109.25902 * 299.42776 * 13 12 11 15 15 H 1.08996 * 111.08964 * 177.82898 * 14 13 12 16 16 C 1.46949 * 120.44582 * 176.91501 * 7 5 4 17 17 N 1.47568 * 107.98536 * 56.37315 * 14 13 12 18 18 C 1.36937 * 121.61074 * 122.27795 * 17 14 13 19 19 H 1.07998 * 120.00041 * 28.05443 * 18 17 14 20 20 C 1.38812 * 120.00071 * 208.04707 * 18 17 14 21 21 N 1.31623 * 120.00016 * 19.74128 * 20 18 17 22 22 Si 1.86802 * 120.00053 * 199.74276 * 20 18 17 23 23 H 1.48495 * 109.47314 * 94.61333 * 22 20 18 24 24 H 1.48503 * 109.47062 * 214.61445 * 22 20 18 25 25 H 1.48507 * 109.46928 * 334.61152 * 22 20 18 26 26 C 1.39826 * 118.15707 * 359.48098 * 4 3 2 27 27 C 1.38131 * 119.00658 * 0.27091 * 26 4 3 28 28 N 1.31802 * 119.54942 * 179.69670 * 2 1 3 29 29 H 1.08998 * 109.46613 * 270.30345 * 1 2 3 30 30 H 1.09002 * 109.46732 * 30.30086 * 1 2 3 31 31 H 1.08994 * 109.47084 * 150.30062 * 1 2 3 32 32 H 1.08000 * 120.49711 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.55055 * 5.95932 * 8 7 5 34 34 H 1.08996 * 109.58676 * 245.45654 * 8 7 5 35 35 H 1.08999 * 109.50529 * 180.24153 * 11 9 8 36 36 H 1.09000 * 109.50160 * 300.36396 * 11 9 8 37 37 H 1.09000 * 109.41697 * 180.66739 * 12 11 9 38 38 H 1.09000 * 109.41551 * 300.53056 * 12 11 9 39 39 H 1.09003 * 109.50357 * 179.48593 * 13 12 11 40 40 H 1.09010 * 109.50160 * 59.36131 * 13 12 11 41 41 H 1.08997 * 109.61886 * 114.49713 * 16 7 5 42 42 H 1.09005 * 109.61885 * 354.12537 * 16 7 5 43 43 H 0.96996 * 119.99482 * 179.97438 * 21 20 18 44 44 H 1.08004 * 120.50065 * 180.29205 * 26 4 3 45 45 H 1.07997 * 119.55239 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2020 0.0000 4 6 3.5865 1.1884 -0.0048 5 6 4.3600 2.4519 -0.0105 6 8 4.0595 3.3517 0.7489 7 7 5.3971 2.6033 -0.8578 8 6 5.8146 1.4997 -1.7399 9 6 5.8311 2.0088 -3.1889 10 1 6.2663 1.2619 -3.8528 11 6 4.3950 2.3484 -3.6068 12 6 3.8445 3.4372 -2.6835 13 6 4.7059 4.6968 -2.7964 14 6 6.1429 4.3663 -2.3750 15 1 6.7923 5.2353 -2.4807 16 6 6.1286 3.8763 -0.9195 17 7 6.6212 3.2547 -3.2196 18 6 7.7443 3.3735 -3.9941 19 1 8.5353 4.0467 -3.6985 20 6 7.8660 2.6285 -5.1590 21 7 6.7947 2.1193 -5.7296 22 14 9.5503 2.3486 -5.9169 23 1 10.0976 1.0525 -5.4420 24 1 9.4290 2.3222 -7.3967 25 1 10.4632 3.4487 -5.5146 26 6 4.2343 -0.0508 0.0017 27 6 3.4741 -1.2040 0.0069 28 7 2.1571 -1.1466 0.0061 29 1 -0.3632 0.0054 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8926 -0.5091 32 1 1.6495 2.1377 -0.0004 33 1 5.1089 0.6738 -1.6499 34 1 6.8127 1.1644 -1.4583 35 1 4.3907 2.7075 -4.6360 36 1 3.7729 1.4567 -3.5293 37 1 2.8196 3.6720 -2.9710 38 1 3.8592 3.0805 -1.6536 39 1 4.3042 5.4720 -2.1438 40 1 4.7010 5.0497 -3.8278 41 1 7.1513 3.7278 -0.5730 42 1 5.6321 4.6145 -0.2896 43 1 6.8799 1.5991 -6.5438 44 1 5.3130 -0.1054 0.0030 45 1 3.9653 -2.1658 0.0115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039948775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:11:36 Heat of formation + Delta-G solvation = 41.762188 kcal Electronic energy + Delta-G solvation = -28180.281290 eV Core-core repulsion = 24584.776744 eV Total energy + Delta-G solvation = -3595.504546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50085 -40.89682 -39.22752 -35.77494 -34.83070 -34.05970 -33.55714 -33.08510 -32.19352 -28.82508 -28.57522 -27.24953 -25.97699 -24.85380 -23.72689 -23.11206 -22.81294 -20.97778 -20.04763 -18.91471 -18.08602 -17.59323 -17.18849 -16.88616 -16.46886 -16.35545 -15.78231 -15.68588 -15.40710 -15.23846 -14.76345 -14.64355 -14.54254 -14.37413 -14.08701 -13.68868 -13.52145 -13.31108 -13.11125 -13.09442 -13.02904 -12.70313 -12.61445 -12.47926 -12.11057 -11.95228 -11.81761 -11.72764 -11.49041 -11.18156 -11.09631 -10.85220 -10.49575 -10.40244 -9.89858 -9.54693 -8.49790 -7.83231 -5.27531 -0.21014 0.06622 1.48182 1.51664 1.52882 1.59562 1.88905 2.53201 2.72436 3.20863 3.29781 3.35796 3.48228 3.78460 3.91877 4.01356 4.05941 4.11427 4.17891 4.24095 4.30152 4.38596 4.45438 4.53416 4.63708 4.68060 4.72193 4.78922 4.79097 4.80896 4.85071 4.95563 4.98549 5.03418 5.06998 5.18768 5.20010 5.31624 5.37209 5.47566 5.62883 5.65327 5.71266 5.79469 6.31070 6.40116 6.92355 6.92961 7.15844 7.82500 8.42212 9.20601 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.004647 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.737112 B = 6024.296298 C = 6530.851981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.087 4.087 5 C 0.561 3.439 6 O -0.571 6.571 7 N -0.579 5.579 8 C 0.086 3.914 9 C 0.176 3.824 10 H 0.084 0.916 11 C -0.102 4.102 12 C -0.134 4.134 13 C -0.118 4.118 14 C 0.147 3.853 15 H 0.080 0.920 16 C 0.108 3.892 17 N -0.591 5.591 18 C -0.259 4.259 19 H 0.066 0.934 20 C -0.037 4.037 21 N -0.919 5.919 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.274 1.274 26 C -0.153 4.153 27 C 0.106 3.894 28 N -0.490 5.490 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.158 0.842 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -5.246 11.004 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.015 4.015 3 C -0.156 4.156 4 C -0.098 4.098 5 C 0.351 3.649 6 O -0.452 6.452 7 N -0.309 5.309 8 C -0.037 4.037 9 C 0.069 3.931 10 H 0.102 0.898 11 C -0.142 4.142 12 C -0.172 4.172 13 C -0.157 4.157 14 C 0.040 3.960 15 H 0.098 0.902 16 C -0.016 4.016 17 N -0.313 5.313 18 C -0.389 4.389 19 H 0.083 0.917 20 C -0.233 4.233 21 N -0.564 5.564 22 Si 0.787 3.213 23 H -0.212 1.212 24 H -0.229 1.229 25 H -0.199 1.199 26 C -0.173 4.173 27 C -0.051 4.051 28 N -0.201 5.201 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.175 0.825 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.506 -5.599 11.234 15.162 hybrid contribution 1.490 0.925 -1.132 2.088 sum -7.015 -4.674 10.101 13.156 Atomic orbital electron populations 1.20818 0.86286 1.04523 1.04291 1.21692 0.98666 0.87232 0.93940 1.22104 0.92723 1.00638 1.00102 1.20320 0.94908 0.93706 1.00891 1.18297 0.79976 0.87031 0.79616 1.90745 1.69440 1.43393 1.41658 1.48175 1.30402 1.15177 1.37182 1.22962 1.00704 0.88798 0.91232 1.21011 0.90304 0.89589 0.92188 0.89782 1.21645 0.97000 0.96982 0.98532 1.22078 0.97108 0.96128 1.01846 1.21862 0.96934 0.97256 0.99678 1.21366 0.93673 0.91423 0.89520 0.90181 1.22158 0.96159 0.85108 0.98125 1.44588 1.28263 1.08776 1.49647 1.19395 0.94208 1.24247 1.01043 0.91658 1.25587 0.99322 1.02312 0.96118 1.70155 1.27870 1.38978 1.19403 0.85404 0.81079 0.78095 0.76684 1.21248 1.22860 1.19876 1.22576 1.02799 0.91820 1.00130 1.23231 0.88827 0.99325 0.93710 1.67490 1.10979 1.29574 1.12012 0.88902 0.89319 0.89834 0.84006 0.87960 0.90636 0.94519 0.93713 0.94329 0.89670 0.92031 0.94677 0.90901 0.89353 0.94218 0.82464 0.78915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.16 71.24 0.72 -0.90 16 2 C 0.12 2.80 6.78 42.55 0.29 3.08 16 3 C -0.14 -3.48 9.46 22.63 0.21 -3.26 16 4 C -0.09 -2.44 5.03 -19.88 -0.10 -2.54 16 5 C 0.56 18.46 4.75 86.88 0.41 18.87 16 6 O -0.57 -21.77 16.42 -3.76 -0.06 -21.83 16 7 N -0.58 -19.15 1.66 -819.35 -1.36 -20.51 16 8 C 0.09 2.86 4.77 86.42 0.41 3.27 16 9 C 0.18 7.42 2.67 45.11 0.12 7.54 16 10 H 0.08 4.10 5.96 -2.39 -0.01 4.09 16 11 C -0.10 -4.23 5.56 30.72 0.17 -4.06 16 12 C -0.13 -5.00 5.55 30.60 0.17 -4.83 16 13 C -0.12 -4.53 5.58 30.72 0.17 -4.35 16 14 C 0.15 5.75 3.62 45.11 0.16 5.91 16 15 H 0.08 3.08 8.01 -2.39 -0.02 3.06 16 16 C 0.11 3.70 5.86 86.49 0.51 4.20 16 17 N -0.59 -26.75 2.53 -645.70 -1.63 -28.39 16 18 C -0.26 -13.12 9.70 84.03 0.81 -12.30 16 19 H 0.07 3.28 7.90 -2.91 -0.02 3.25 16 20 C -0.04 -1.89 4.94 84.86 0.42 -1.47 16 21 N -0.92 -50.06 11.09 21.65 0.24 -49.82 16 22 Si 0.96 42.39 29.60 68.60 2.03 44.42 16 23 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C -0.15 -3.52 7.45 22.63 0.17 -3.35 16 27 C 0.11 2.18 11.17 84.67 0.95 3.13 16 28 N -0.49 -11.61 10.25 -184.03 -1.89 -13.50 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.18 8.08 -2.39 -0.02 1.17 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.10 2.96 4.35 -2.38 -0.01 2.95 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 3.04 2.43 -3.42 -0.01 3.03 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.09 2.95 7.00 -2.38 -0.02 2.94 16 43 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 44 H 0.16 3.11 6.80 -2.91 -0.02 3.09 16 45 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -62.64 343.95 3.93 -58.71 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 1.00 Total: 21.95 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.60 Total: 8.95 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.64 Total: -112.21 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -62.64 3.93 -58.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039948775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.475 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds