Wall clock time and date at job start Fri Apr 10 2020 23:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38631 * 120.46932 * 2 1 4 4 C 1.38579 * 118.48693 * 179.97438 * 3 2 1 5 5 C 1.38604 * 119.35231 * 359.97438 * 4 3 2 6 6 N 1.31491 * 120.90235 * 359.72608 * 5 4 3 7 7 C 1.32745 * 121.64067 * 0.56411 * 6 5 4 8 8 C 1.48169 * 119.72616 * 179.71097 * 7 6 5 9 9 O 1.21511 * 119.99801 * 104.03309 * 8 7 6 10 10 N 1.34775 * 119.99696 * 284.03979 * 8 7 6 11 11 C 1.48251 * 127.00685 * 355.04158 * 10 8 7 12 12 C 1.55266 * 103.44818 * 141.51929 * 11 10 8 13 13 C 1.53232 * 102.46012 * 36.19507 * 12 11 10 14 14 C 1.53956 * 111.55934 * 101.21505 * 13 12 11 15 15 C 1.54588 * 102.66981 * 153.88650 * 14 13 12 16 16 N 1.47136 * 107.45191 * 339.25800 * 15 14 13 17 17 C 1.36935 * 125.60689 * 178.95797 * 16 15 14 18 18 H 1.07996 * 119.99932 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99732 * 0.03573 * 17 16 15 20 20 N 1.31617 * 120.00408 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99754 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47763 * 59.99251 * 21 19 17 23 23 H 1.48498 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46920 * 299.99302 * 21 19 17 25 25 C 1.47704 * 108.78191 * 359.00500 * 16 15 14 26 26 C 1.47890 * 127.00368 * 175.02184 * 10 8 7 27 27 H 1.08996 * 109.47775 * 274.82281 * 1 2 3 28 28 H 1.09006 * 109.47206 * 34.82424 * 1 2 3 29 29 H 1.09005 * 109.47446 * 154.82065 * 1 2 3 30 30 H 1.07997 * 120.75502 * 359.94520 * 3 2 1 31 31 H 1.08008 * 120.32583 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.54845 * 179.97438 * 5 4 3 33 33 H 1.08995 * 110.62565 * 260.00734 * 11 10 8 34 34 H 1.09000 * 110.62384 * 22.87119 * 11 10 8 35 35 H 1.08999 * 110.80698 * 277.95558 * 12 11 10 36 36 H 1.09001 * 110.80767 * 154.43707 * 12 11 10 37 37 H 1.09001 * 110.72887 * 35.63304 * 14 13 12 38 38 H 1.09000 * 110.87396 * 272.20342 * 14 13 12 39 39 H 1.09002 * 109.86706 * 219.75941 * 15 14 13 40 40 H 1.08992 * 109.87041 * 98.77232 * 15 14 13 41 41 H 0.96999 * 120.00196 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.39037 * 141.41584 * 25 16 15 43 43 H 1.09010 * 110.38531 * 263.67916 * 25 16 15 44 44 H 1.08999 * 110.04787 * 85.90999 * 26 10 8 45 45 H 1.09000 * 110.09019 * 324.46388 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2321 -0.0840 0.0016 6 7 3.5406 -1.2024 0.0075 7 6 2.2132 -1.2004 0.0015 8 6 1.4766 -2.4860 0.0021 9 8 0.9485 -2.8832 1.0218 10 7 1.3924 -3.2148 -1.1285 11 6 1.8851 -2.8346 -2.4740 12 6 2.4472 -4.1658 -3.0422 13 6 1.4665 -5.2032 -2.4852 14 6 0.4425 -5.6415 -3.5481 15 6 0.0484 -7.0594 -3.0748 16 7 1.1226 -7.5452 -2.1945 17 6 1.1423 -8.7552 -1.5536 18 1 1.9800 -9.0201 -0.9258 19 6 0.0854 -9.6412 -1.7113 20 7 -0.9358 -9.3182 -2.4762 21 14 0.1118 -11.2915 -0.8365 22 1 0.1812 -11.0732 0.6307 23 1 -1.1238 -12.0464 -1.1662 24 1 1.2988 -12.0669 -1.2782 25 6 2.1757 -6.5126 -2.1148 26 6 0.7899 -4.5570 -1.2795 27 1 -0.3634 0.0864 1.0239 28 1 -0.3634 0.8437 -0.5869 29 1 -0.3634 -0.9300 -0.4372 30 1 1.6901 2.1415 -0.0009 31 1 4.1722 2.0598 0.0001 32 1 5.3113 -0.1250 0.0016 33 1 1.0665 -2.4682 -3.0933 34 1 2.6722 -2.0846 -2.3969 35 1 3.4561 -4.3492 -2.6726 36 1 2.4277 -4.1605 -4.1320 37 1 0.9028 -5.6779 -4.5354 38 1 -0.4238 -4.9799 -3.5488 39 1 -0.0540 -7.7217 -3.9345 40 1 -0.8915 -7.0184 -2.5247 41 1 -1.6742 -9.9375 -2.5866 42 1 2.5752 -6.4549 -1.1023 43 1 2.9738 -6.7285 -2.8253 44 1 -0.2820 -4.4677 -1.4558 45 1 0.9729 -5.1523 -0.3849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041181582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:00 Heat of formation + Delta-G solvation = 36.165928 kcal Electronic energy + Delta-G solvation = -26632.353260 eV Core-core repulsion = 23036.606042 eV Total energy + Delta-G solvation = -3595.747218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96004 -39.73500 -38.12865 -35.65282 -33.95162 -32.80887 -32.18360 -30.47502 -29.06833 -28.37071 -27.72727 -26.06559 -24.67538 -23.63250 -22.50537 -22.35803 -20.20882 -19.95654 -18.80579 -17.55454 -17.07988 -16.68893 -16.31428 -15.72084 -15.38084 -14.65885 -14.52753 -14.44294 -14.18979 -13.86645 -13.60692 -13.47772 -13.12003 -13.05534 -12.87496 -12.80027 -12.44535 -12.07668 -11.94319 -11.84400 -11.39997 -11.38380 -11.24335 -10.84993 -10.73220 -10.32911 -10.17222 -10.11565 -9.98751 -9.93086 -9.74693 -9.60172 -9.55092 -9.20948 -8.60917 -8.52964 -6.78127 -5.66168 -2.99201 0.60233 0.91495 2.47771 2.89773 3.40490 3.45343 3.49474 3.50564 4.08109 4.33026 4.43433 4.54415 4.61254 4.64760 4.75175 4.87293 4.99932 5.04405 5.20143 5.30096 5.32479 5.33642 5.43288 5.54557 5.56904 5.69467 5.77640 5.82973 5.85088 5.87699 5.97443 6.08827 6.15874 6.19260 6.29481 6.36935 6.38479 6.53864 6.58984 6.78590 6.85871 7.54940 7.57807 7.60374 7.65201 7.86907 8.10447 8.30527 9.27336 9.87261 10.53091 11.45507 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003095 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.002997 B = 9044.506120 C = 9185.435590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.159 4.159 5 C 0.095 3.905 6 N -0.451 5.451 7 C 0.101 3.899 8 C 0.594 3.406 9 O -0.525 6.525 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.116 4.116 13 C -0.084 4.084 14 C -0.131 4.131 15 C 0.177 3.823 16 N -0.605 5.605 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.150 3.850 26 C 0.132 3.868 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 24.245 -1.257 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.104 4.104 4 C -0.178 4.178 5 C -0.064 4.064 6 N -0.161 5.161 7 C -0.038 4.038 8 C 0.379 3.621 9 O -0.400 6.400 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.155 4.155 13 C -0.086 4.086 14 C -0.170 4.170 15 C 0.052 3.948 16 N -0.332 5.332 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.024 3.976 26 C 0.010 3.990 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.179 0.821 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.660 23.040 -0.583 23.990 hybrid contribution -0.320 -0.015 0.422 0.529 sum 6.340 23.025 -0.162 23.882 Atomic orbital electron populations 1.20817 0.89578 1.03445 1.03447 1.20842 0.97847 0.92662 0.98894 1.21455 0.94185 0.97850 0.96928 1.22316 0.95217 0.99800 1.00509 1.22841 1.00499 0.87259 0.95848 1.67660 1.06546 1.31701 1.10222 1.20958 0.90325 0.93225 0.99296 1.17395 0.79724 0.82442 0.82515 1.90836 1.47199 1.70148 1.31848 1.48910 1.58181 1.18927 1.08031 1.22622 0.98532 0.98058 0.82852 1.22552 0.99295 0.92981 1.00654 1.21663 0.96316 0.95572 0.95050 1.22908 0.97208 1.00033 0.96806 1.21218 0.91535 0.88064 0.93935 1.44561 1.18408 1.15286 1.54919 1.19013 1.03620 0.90987 1.21885 0.90548 1.24775 0.96780 0.98726 1.00122 1.69947 1.09333 1.35909 1.41891 0.86209 0.76758 0.83606 0.79261 1.21163 1.21648 1.21237 1.21407 0.91637 0.86469 0.98107 1.21962 0.96891 0.80828 0.99278 0.89979 0.90655 0.91081 0.84196 0.84302 0.82071 0.90881 0.90829 0.90549 0.89848 0.91961 0.92006 0.93943 0.93582 0.93784 0.94233 0.95953 0.91072 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.71 36.00 0.35 -0.75 16 2 C -0.10 -1.08 5.93 -104.09 -0.62 -1.70 16 3 C -0.08 -0.62 9.87 -39.31 -0.39 -1.01 16 4 C -0.16 -1.14 10.11 -39.32 -0.40 -1.54 16 5 C 0.09 0.88 11.18 -17.56 -0.20 0.68 16 6 N -0.45 -6.00 10.21 -9.80 -0.10 -6.10 16 7 C 0.10 1.41 5.34 -83.01 -0.44 0.96 16 8 C 0.59 10.00 5.90 -12.18 -0.07 9.92 16 9 O -0.53 -10.76 17.49 5.36 0.09 -10.67 16 10 N -0.61 -9.50 3.31 -170.95 -0.57 -10.07 16 11 C 0.10 1.26 6.99 -1.88 -0.01 1.24 16 12 C -0.12 -1.53 6.20 -25.41 -0.16 -1.69 16 13 C -0.08 -1.43 0.74 -153.85 -0.11 -1.54 16 14 C -0.13 -2.32 5.86 -25.40 -0.15 -2.47 16 15 C 0.18 4.24 5.33 -2.86 -0.02 4.22 16 16 N -0.61 -15.49 3.41 -170.49 -0.58 -16.07 16 17 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.32 10.30 55.49 0.57 -26.75 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.12 6.03 -3.15 -0.02 3.11 16 26 C 0.13 2.34 6.26 -3.48 -0.02 2.32 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.84 7.29 -51.93 -0.38 0.46 16 35 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.08 0.95 7.59 -51.93 -0.39 0.55 16 37 H 0.06 1.01 7.74 -51.93 -0.40 0.61 16 38 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 39 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 40 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.85 7.76 -51.93 -0.40 0.45 16 43 H 0.02 0.46 8.05 -51.92 -0.42 0.04 16 44 H 0.07 1.27 7.47 -51.93 -0.39 0.88 16 45 H 0.08 1.77 7.50 -51.93 -0.39 1.38 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -34.36 362.34 -9.45 -43.81 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.80 Total: -2.04 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.51 Total: 4.86 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.68 Total: -58.99 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.36 -9.45 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041181582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.976 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds