Wall clock time and date at job start Fri Apr 10 2020 23:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38631 * 120.46932 * 2 1 4 4 C 1.38579 * 118.48693 * 179.97438 * 3 2 1 5 5 C 1.38604 * 119.35231 * 359.97438 * 4 3 2 6 6 N 1.31491 * 120.90235 * 359.72608 * 5 4 3 7 7 C 1.32745 * 121.64067 * 0.56411 * 6 5 4 8 8 C 1.48169 * 119.72616 * 179.71097 * 7 6 5 9 9 O 1.21511 * 119.99801 * 104.03309 * 8 7 6 10 10 N 1.34775 * 119.99696 * 284.03979 * 8 7 6 11 11 C 1.48251 * 127.00685 * 355.04158 * 10 8 7 12 12 C 1.55266 * 103.44818 * 141.51929 * 11 10 8 13 13 C 1.53232 * 102.46012 * 36.19507 * 12 11 10 14 14 C 1.53956 * 111.55934 * 101.21505 * 13 12 11 15 15 C 1.54588 * 102.66981 * 153.88650 * 14 13 12 16 16 N 1.47136 * 107.45191 * 339.25800 * 15 14 13 17 17 C 1.36935 * 125.60689 * 178.95797 * 16 15 14 18 18 H 1.07996 * 119.99932 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99732 * 0.03573 * 17 16 15 20 20 N 1.31617 * 120.00408 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99754 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47763 * 59.99251 * 21 19 17 23 23 H 1.48498 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46920 * 299.99302 * 21 19 17 25 25 C 1.47704 * 108.78191 * 359.00500 * 16 15 14 26 26 C 1.47890 * 127.00368 * 175.02184 * 10 8 7 27 27 H 1.08996 * 109.47775 * 274.82281 * 1 2 3 28 28 H 1.09006 * 109.47206 * 34.82424 * 1 2 3 29 29 H 1.09005 * 109.47446 * 154.82065 * 1 2 3 30 30 H 1.07997 * 120.75502 * 359.94520 * 3 2 1 31 31 H 1.08008 * 120.32583 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.54845 * 179.97438 * 5 4 3 33 33 H 1.08995 * 110.62565 * 260.00734 * 11 10 8 34 34 H 1.09000 * 110.62384 * 22.87119 * 11 10 8 35 35 H 1.08999 * 110.80698 * 277.95558 * 12 11 10 36 36 H 1.09001 * 110.80767 * 154.43707 * 12 11 10 37 37 H 1.09001 * 110.72887 * 35.63304 * 14 13 12 38 38 H 1.09000 * 110.87396 * 272.20342 * 14 13 12 39 39 H 1.09002 * 109.86706 * 219.75941 * 15 14 13 40 40 H 1.08992 * 109.87041 * 98.77232 * 15 14 13 41 41 H 0.96999 * 120.00196 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.39037 * 141.41584 * 25 16 15 43 43 H 1.09010 * 110.38531 * 263.67916 * 25 16 15 44 44 H 1.08999 * 110.04787 * 85.90999 * 26 10 8 45 45 H 1.09000 * 110.09019 * 324.46388 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2321 -0.0840 0.0016 6 7 3.5406 -1.2024 0.0075 7 6 2.2132 -1.2004 0.0015 8 6 1.4766 -2.4860 0.0021 9 8 0.9485 -2.8832 1.0218 10 7 1.3924 -3.2148 -1.1285 11 6 1.8851 -2.8346 -2.4740 12 6 2.4472 -4.1658 -3.0422 13 6 1.4665 -5.2032 -2.4852 14 6 0.4425 -5.6415 -3.5481 15 6 0.0484 -7.0594 -3.0748 16 7 1.1226 -7.5452 -2.1945 17 6 1.1423 -8.7552 -1.5536 18 1 1.9800 -9.0201 -0.9258 19 6 0.0854 -9.6412 -1.7113 20 7 -0.9358 -9.3182 -2.4762 21 14 0.1118 -11.2915 -0.8365 22 1 0.1812 -11.0732 0.6307 23 1 -1.1238 -12.0464 -1.1662 24 1 1.2988 -12.0669 -1.2782 25 6 2.1757 -6.5126 -2.1148 26 6 0.7899 -4.5570 -1.2795 27 1 -0.3634 0.0864 1.0239 28 1 -0.3634 0.8437 -0.5869 29 1 -0.3634 -0.9300 -0.4372 30 1 1.6901 2.1415 -0.0009 31 1 4.1722 2.0598 0.0001 32 1 5.3113 -0.1250 0.0016 33 1 1.0665 -2.4682 -3.0933 34 1 2.6722 -2.0846 -2.3969 35 1 3.4561 -4.3492 -2.6726 36 1 2.4277 -4.1605 -4.1320 37 1 0.9028 -5.6779 -4.5354 38 1 -0.4238 -4.9799 -3.5488 39 1 -0.0540 -7.7217 -3.9345 40 1 -0.8915 -7.0184 -2.5247 41 1 -1.6742 -9.9375 -2.5866 42 1 2.5752 -6.4549 -1.1023 43 1 2.9738 -6.7285 -2.8253 44 1 -0.2820 -4.4677 -1.4558 45 1 0.9729 -5.1523 -0.3849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041181582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:00 Heat of formation + Delta-G solvation = 13.242773 kcal Electronic energy + Delta-G solvation = -26633.347283 eV Core-core repulsion = 23036.606042 eV Total energy + Delta-G solvation = -3596.741241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95944 -40.91088 -39.48510 -37.25895 -34.68774 -34.55542 -33.14074 -32.04706 -30.68168 -29.81381 -28.61580 -27.54480 -26.24982 -24.78783 -23.70676 -23.18507 -22.12485 -21.01359 -20.25911 -18.96428 -18.43279 -17.91828 -17.41872 -16.81125 -16.65958 -16.32067 -15.90842 -15.58973 -15.30428 -15.24356 -14.97841 -14.60969 -14.47895 -14.02622 -13.86655 -13.79964 -13.70934 -13.44914 -13.26054 -13.05266 -12.93046 -12.88299 -12.73260 -12.63727 -12.52209 -12.08067 -11.87439 -11.64162 -11.45891 -11.35813 -11.24890 -10.78185 -10.69597 -10.47363 -9.98335 -9.87516 -8.89014 -7.85722 -5.20479 -0.14388 0.25941 1.27794 1.42693 1.46402 1.52324 1.73959 2.48115 2.67334 3.11870 3.31364 3.48787 3.56211 3.57877 3.68910 3.80295 3.82631 3.97564 4.06108 4.20081 4.23722 4.36582 4.42650 4.49340 4.53976 4.61772 4.62988 4.68678 4.71992 4.79147 4.84149 4.90215 4.99189 5.03360 5.05778 5.10408 5.14336 5.19859 5.29137 5.35082 5.43745 5.66456 5.70146 5.79217 6.19968 6.34557 6.78815 6.89414 7.10786 7.77276 8.41234 9.23996 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003095 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.002997 B = 9044.506120 C = 9185.435590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.072 4.072 4 C -0.137 4.137 5 C 0.085 3.915 6 N -0.489 5.489 7 C 0.069 3.931 8 C 0.589 3.411 9 O -0.581 6.581 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.105 4.105 13 C -0.071 4.071 14 C -0.111 4.111 15 C 0.183 3.817 16 N -0.627 5.627 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.976 3.024 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.147 3.853 26 C 0.136 3.864 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.188 0.812 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.247 0.753 42 H 0.023 0.977 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 28.057 -2.644 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.074 4.074 6 N -0.199 5.199 7 C -0.069 4.069 8 C 0.377 3.623 9 O -0.461 6.461 10 N -0.339 5.339 11 C -0.015 4.015 12 C -0.143 4.143 13 C -0.073 4.073 14 C -0.149 4.149 15 C 0.058 3.942 16 N -0.354 5.354 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.804 3.196 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.201 1.201 25 C 0.022 3.978 26 C 0.013 3.987 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.063 0.937 30 H 0.196 0.804 31 H 0.200 0.800 32 H 0.205 0.795 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.541 26.882 -2.004 28.277 hybrid contribution -0.809 -1.123 0.910 1.656 sum 7.732 25.759 -1.094 26.917 Atomic orbital electron populations 1.20830 0.89286 1.03461 1.03527 1.21025 0.98271 0.92780 0.98844 1.21912 0.94672 0.97949 0.95204 1.22794 0.95204 1.00482 0.97178 1.23414 1.01671 0.87162 0.95149 1.67532 1.06449 1.34176 1.11766 1.20517 0.90881 0.92188 1.03310 1.18100 0.79054 0.83433 0.81754 1.90779 1.49616 1.71869 1.33791 1.49003 1.57614 1.17768 1.09475 1.22835 0.99800 0.97901 0.80920 1.22561 0.97879 0.91398 1.02511 1.21507 0.96667 0.94675 0.94462 1.22778 0.98369 0.95899 0.97876 1.21007 0.89966 0.91316 0.91876 1.44863 1.20021 1.15536 1.54941 1.19375 1.03663 0.92413 1.21975 0.90676 1.25599 0.96622 1.02226 1.01237 1.70169 1.09701 1.36709 1.43126 0.85197 0.76845 0.79513 0.78060 1.20878 1.21683 1.20093 1.21574 0.91280 0.87390 0.97586 1.21702 0.97032 0.82068 0.97855 0.90492 0.87293 0.93700 0.80441 0.79998 0.79492 0.88324 0.89314 0.90544 0.86476 0.89077 0.89754 0.97224 0.97586 0.94388 0.95895 0.94529 0.91579 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.71 71.24 0.69 -1.35 16 2 C -0.11 -2.11 5.93 -19.52 -0.12 -2.22 16 3 C -0.07 -0.82 9.87 22.45 0.22 -0.60 16 4 C -0.14 -1.30 10.11 22.44 0.23 -1.07 16 5 C 0.09 1.31 11.18 84.83 0.95 2.26 16 6 N -0.49 -12.41 10.21 -184.91 -1.89 -14.30 16 7 C 0.07 1.88 5.34 41.89 0.22 2.10 16 8 C 0.59 20.69 5.90 86.88 0.51 21.20 16 9 O -0.58 -25.74 17.49 -3.75 -0.07 -25.81 16 10 N -0.61 -19.29 3.31 -813.07 -2.69 -21.98 16 11 C 0.11 2.37 6.99 86.82 0.61 2.97 16 12 C -0.11 -2.47 6.20 31.45 0.19 -2.28 16 13 C -0.07 -2.39 0.74 -51.76 -0.04 -2.43 16 14 C -0.11 -3.80 5.86 31.46 0.18 -3.62 16 15 C 0.18 9.11 5.33 86.80 0.46 9.58 16 16 N -0.63 -33.46 3.41 -693.32 -2.36 -35.82 16 17 C -0.25 -14.47 10.28 84.03 0.86 -13.61 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.06 -3.78 5.49 84.86 0.47 -3.31 16 20 N -0.95 -58.62 10.30 21.65 0.22 -58.40 16 21 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 22 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 C 0.15 6.26 6.03 86.30 0.52 6.78 16 26 C 0.14 5.06 6.26 85.98 0.54 5.60 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 1.13 8.13 -2.38 -0.02 1.12 16 29 H 0.04 1.03 6.91 -2.38 -0.02 1.01 16 30 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.78 7.29 -2.39 -0.02 1.76 16 35 H 0.08 1.85 7.93 -2.39 -0.02 1.83 16 36 H 0.12 2.06 7.59 -2.39 -0.02 2.04 16 37 H 0.09 2.66 7.74 -2.39 -0.02 2.64 16 38 H 0.08 2.55 7.69 -2.39 -0.02 2.53 16 39 H 0.01 0.53 7.50 -2.39 -0.02 0.51 16 40 H 0.01 0.33 7.38 -2.39 -0.02 0.32 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.02 1.04 7.76 -2.39 -0.02 1.02 16 43 H 0.04 1.48 8.05 -2.38 -0.02 1.46 16 44 H 0.07 2.49 7.47 -2.39 -0.02 2.47 16 45 H 0.04 1.82 7.50 -2.39 -0.02 1.81 16 Total: -1.00 -83.28 362.34 2.73 -80.55 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.98 Total: 5.86 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.51 Total: 19.99 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -6.72 Total: -130.50 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -83.28 2.73 -80.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041181582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.789 kcal (2) G-P(sol) polarization free energy of solvation -83.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds