Wall clock time and date at job start Fri Apr 10 2020 23:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38173 * 120.49943 * 2 1 4 4 N 1.31791 * 120.89335 * 180.02562 * 3 2 1 5 5 C 1.31830 * 122.05454 * 0.02562 * 4 3 2 6 6 C 1.38131 * 120.89328 * 359.97438 * 5 4 3 7 7 C 1.39793 * 120.49891 * 180.02562 * 2 1 3 8 8 C 1.48149 * 120.92553 * 0.02562 * 7 2 1 9 9 O 1.21516 * 119.99971 * 42.93002 * 8 7 2 10 10 N 1.34780 * 120.00338 * 222.93190 * 8 7 2 11 11 C 1.47563 * 125.67021 * 5.07270 * 10 8 7 12 12 C 1.55435 * 104.88218 * 156.03382 * 11 10 8 13 13 C 1.53659 * 101.31071 * 35.82351 * 12 11 10 14 14 C 1.53654 * 111.42189 * 204.77466 * 13 12 11 15 15 C 1.55179 * 101.41767 * 272.73556 * 14 13 12 16 16 N 1.47558 * 105.00783 * 324.50476 * 15 14 13 17 17 C 1.36939 * 125.67125 * 203.82585 * 16 15 14 18 18 H 1.08008 * 119.99532 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00404 * 0.04385 * 17 16 15 20 20 N 1.31616 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47049 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47150 * 119.99962 * 21 19 17 24 24 H 1.48502 * 109.47305 * 239.99991 * 21 19 17 25 25 C 1.47399 * 108.65326 * 23.86406 * 16 15 14 26 26 C 1.47404 * 125.67558 * 185.37986 * 10 8 7 27 27 H 1.08998 * 109.47104 * 263.98861 * 1 2 3 28 28 H 1.08999 * 109.46548 * 23.99338 * 1 2 3 29 29 H 1.09001 * 109.46857 * 143.99104 * 1 2 3 30 30 H 1.08000 * 119.55256 * 0.04105 * 3 2 1 31 31 H 1.07995 * 119.55352 * 180.27565 * 5 4 3 32 32 H 1.08000 * 120.49548 * 180.02562 * 6 5 4 33 33 H 1.09000 * 110.33454 * 275.02043 * 11 10 8 34 34 H 1.09002 * 110.33811 * 37.25700 * 11 10 8 35 35 H 1.08999 * 111.25243 * 277.75791 * 12 11 10 36 36 H 1.08992 * 110.95661 * 153.76730 * 12 11 10 37 37 H 1.09004 * 111.03597 * 30.77437 * 14 13 12 38 38 H 1.09001 * 111.03521 * 154.69770 * 14 13 12 39 39 H 1.09000 * 110.33026 * 205.62165 * 15 14 13 40 40 H 1.09000 * 110.42049 * 83.43843 * 15 14 13 41 41 H 0.97006 * 119.99904 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.98949 * 238.53775 * 25 16 15 43 43 H 1.08998 * 109.98873 * 117.22674 * 25 16 15 44 44 H 1.08997 * 109.98570 * 301.45259 * 26 10 8 45 45 H 1.08997 * 109.98757 * 62.72929 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2335 0.0871 -0.0015 6 6 3.6138 -1.1474 -0.0016 7 6 2.2165 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.5409 -2.6701 -0.7189 10 7 1.9357 -3.5067 0.7928 11 6 3.0238 -3.4127 1.7852 12 6 2.7245 -4.5390 2.8136 13 6 2.1550 -5.6366 1.9014 14 6 1.2364 -6.5918 2.6790 15 6 2.2570 -7.6302 3.2160 16 7 3.2659 -7.7623 2.1474 17 6 4.0784 -8.8460 1.9458 18 1 4.7880 -8.8449 1.1315 19 6 3.9898 -9.9461 2.7877 20 7 3.1252 -9.9474 3.7800 21 14 5.0976 -11.4247 2.5122 22 1 5.9734 -11.1753 1.3391 23 1 5.9357 -11.6468 3.7179 24 1 4.2642 -12.6277 2.2603 25 6 3.2544 -6.5334 1.3336 26 6 1.3988 -4.8794 0.8105 27 1 -0.3633 -0.1076 1.0220 28 1 -0.3632 0.9389 -0.4179 29 1 -0.3633 -0.8313 -0.6042 30 1 1.6692 2.1263 0.0007 31 1 5.3121 0.1417 0.0026 32 1 4.1996 -2.0547 -0.0020 33 1 3.9886 -3.5799 1.3063 34 1 3.0068 -2.4390 2.2749 35 1 1.9854 -4.2177 3.5475 36 1 3.6392 -4.8729 3.3033 37 1 0.7370 -6.0743 3.4980 38 1 0.5109 -7.0631 2.0159 39 1 1.7659 -8.5869 3.3937 40 1 2.7216 -7.2677 4.1330 41 1 3.0635 -10.7160 4.3686 42 1 3.0363 -6.7771 0.2938 43 1 4.2188 -6.0306 1.4043 44 1 0.3336 -4.8598 1.0407 45 1 1.5622 -5.3558 -0.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041260783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:12:09 Heat of formation + Delta-G solvation = 16.677897 kcal Electronic energy + Delta-G solvation = -26474.613339 eV Core-core repulsion = 22878.021056 eV Total energy + Delta-G solvation = -3596.592283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02061 -40.93422 -39.57437 -37.28174 -34.68489 -34.46816 -33.22736 -31.92429 -30.82562 -29.90503 -28.45769 -27.45213 -26.16897 -24.71666 -23.89735 -23.18624 -22.20574 -20.89815 -20.25369 -18.93944 -18.43987 -17.72926 -17.36734 -16.83531 -16.72417 -16.21747 -15.89862 -15.76929 -15.58542 -15.24209 -15.09523 -14.41566 -14.34270 -14.14307 -13.96025 -13.78354 -13.67584 -13.57932 -13.26666 -13.13884 -12.97147 -12.77941 -12.72765 -12.53153 -12.43438 -11.98546 -11.77652 -11.56186 -11.51417 -11.41891 -11.21315 -10.81255 -10.72750 -10.42342 -9.94082 -9.80641 -8.86646 -7.76629 -5.20025 -0.26060 0.07099 1.47429 1.48084 1.54335 1.58050 1.76592 2.49867 2.74327 3.15356 3.33226 3.47149 3.50656 3.58795 3.61863 3.77902 3.80622 3.85752 3.96408 4.18556 4.22320 4.28887 4.42306 4.52592 4.55908 4.63400 4.68508 4.70718 4.74690 4.76474 4.83800 4.86242 4.89876 4.99670 5.05156 5.10524 5.19119 5.26196 5.29685 5.32041 5.48358 5.62246 5.66462 5.84253 6.31727 6.33208 6.88248 6.90352 7.12436 7.79406 8.43095 9.25308 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.002899 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.099152 B = 9657.333443 C =10121.748809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.095 4.095 3 C 0.096 3.904 4 N -0.486 5.486 5 C 0.090 3.910 6 C -0.134 4.134 7 C -0.099 4.099 8 C 0.573 3.427 9 O -0.565 6.565 10 N -0.605 5.605 11 C 0.103 3.897 12 C -0.108 4.108 13 C -0.071 4.071 14 C -0.117 4.117 15 C 0.159 3.841 16 N -0.626 5.626 17 C -0.235 4.235 18 H 0.079 0.921 19 C -0.066 4.066 20 N -0.947 5.947 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.294 1.294 25 C 0.150 3.850 26 C 0.132 3.868 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.187 0.813 31 H 0.189 0.811 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.067 0.933 40 H -0.005 1.005 41 H 0.246 0.754 42 H 0.019 0.981 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 22.095 -4.111 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 C -0.061 4.061 4 N -0.195 5.195 5 C -0.066 4.066 6 C -0.154 4.154 7 C -0.110 4.110 8 C 0.362 3.638 9 O -0.445 6.445 10 N -0.337 5.337 11 C -0.019 4.019 12 C -0.146 4.146 13 C -0.072 4.072 14 C -0.156 4.156 15 C 0.034 3.966 16 N -0.352 5.352 17 C -0.364 4.364 18 H 0.097 0.903 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.221 1.221 25 C 0.025 3.975 26 C 0.010 3.990 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.204 0.796 31 H 0.206 0.794 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.527 22.661 -4.469 23.148 hybrid contribution 0.094 -2.257 -0.014 2.259 sum -1.433 20.404 -4.483 20.940 Atomic orbital electron populations 1.20986 0.89068 1.04857 1.03415 1.21198 0.98616 0.92534 0.97396 1.23086 0.89675 0.97836 0.95553 1.67618 1.08756 1.32475 1.10655 1.23185 1.01849 0.86492 0.95071 1.22575 0.92911 1.01386 0.98548 1.20143 0.94906 0.92693 1.03291 1.18195 0.83024 0.83356 0.79200 1.90726 1.28248 1.82537 1.42974 1.48625 1.36504 1.10393 1.38195 1.22738 0.89980 1.00370 0.88769 1.22663 1.02348 0.93021 0.96579 1.21381 0.95739 0.94808 0.95270 1.22720 0.96925 0.96504 0.99412 1.21717 0.88492 0.97694 0.88721 1.44909 1.42826 1.14636 1.32806 1.19456 1.12869 0.93357 1.10758 0.90311 1.25570 1.01290 1.01128 0.97844 1.70056 1.39281 1.30468 1.19942 0.85034 0.77938 0.79169 0.77337 1.19222 1.21901 1.22072 1.21266 0.96100 0.86616 0.93475 1.21736 0.98225 0.80583 0.98504 0.90360 0.88559 0.91075 0.79649 0.79381 0.82731 0.89538 0.88575 0.89190 0.89732 0.89322 0.92064 0.91465 0.98712 0.94398 0.96276 0.94927 0.90767 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.56 71.24 0.68 -1.51 16 2 C -0.09 -1.81 5.93 -19.50 -0.12 -1.92 16 3 C 0.10 1.56 10.84 84.68 0.92 2.48 16 4 N -0.49 -8.84 10.33 -196.01 -2.03 -10.86 16 5 C 0.09 1.38 11.17 84.67 0.95 2.32 16 6 C -0.13 -2.26 8.46 22.63 0.19 -2.07 16 7 C -0.10 -2.14 5.26 -19.88 -0.10 -2.24 16 8 C 0.57 15.32 7.12 86.88 0.62 15.94 16 9 O -0.56 -18.83 14.98 -3.77 -0.06 -18.88 16 10 N -0.61 -15.01 3.34 -815.39 -2.72 -17.73 16 11 C 0.10 2.03 5.37 87.01 0.47 2.50 16 12 C -0.11 -2.62 5.87 31.65 0.19 -2.43 16 13 C -0.07 -2.16 0.61 -51.86 -0.03 -2.19 16 14 C -0.12 -4.05 5.93 31.56 0.19 -3.86 16 15 C 0.16 7.44 5.83 86.92 0.51 7.95 16 16 N -0.63 -30.95 3.41 -693.07 -2.36 -33.31 16 17 C -0.24 -12.89 10.28 84.03 0.86 -12.03 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 20 N -0.95 -55.41 10.09 21.65 0.22 -55.19 16 21 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 C 0.15 5.78 6.39 86.15 0.55 6.33 16 26 C 0.13 3.73 6.14 86.15 0.53 4.26 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.13 8.06 -2.39 -0.02 1.11 16 29 H 0.07 1.67 5.68 -2.39 -0.01 1.66 16 30 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.16 2.15 6.53 -2.91 -0.02 2.13 16 33 H 0.09 1.52 7.18 -2.39 -0.02 1.51 16 34 H 0.10 1.54 7.50 -2.39 -0.02 1.52 16 35 H 0.09 1.96 7.82 -2.39 -0.02 1.94 16 36 H 0.08 2.23 7.94 -2.39 -0.02 2.21 16 37 H 0.09 2.60 7.78 -2.39 -0.02 2.59 16 38 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 39 H 0.07 3.69 5.89 -2.39 -0.01 3.67 16 40 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 42 H 0.02 0.76 7.44 -2.39 -0.02 0.75 16 43 H 0.03 1.20 7.78 -2.39 -0.02 1.18 16 44 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 45 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 Total: -1.00 -69.85 354.76 2.93 -66.92 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.99 Total: 11.68 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.86 Total: 10.32 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -6.89 Total: -117.10 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.85 2.93 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041260783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.601 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds